Wall clock time and date at job start Mon Mar 30 2020 05:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99939 * 2 1 4 4 H 1.48501 * 109.47004 * 269.99580 * 3 2 1 5 5 H 1.48503 * 109.46970 * 29.99079 * 3 2 1 6 6 H 1.48493 * 109.47515 * 149.99703 * 3 2 1 7 7 C 1.37871 * 120.00468 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00798 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99740 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.68832 * 56.70975 * 9 7 2 11 11 C 1.54601 * 110.77957 * 293.21303 * 9 7 2 12 12 C 1.51581 * 102.81292 * 267.31280 * 11 9 7 13 13 C 1.37913 * 131.56140 * 163.82725 * 12 11 9 14 14 C 1.38304 * 120.08007 * 180.22767 * 13 12 11 15 15 C 1.38301 * 119.88186 * 0.02562 * 14 13 12 16 16 C 1.37913 * 120.26421 * 359.84608 * 15 14 13 17 17 C 1.38964 * 107.95058 * 343.80520 * 12 11 9 18 18 N 1.40040 * 110.96878 * 359.56777 * 17 12 11 19 19 C 1.46902 * 110.99881 * 256.26308 * 18 17 12 20 20 C 1.53792 * 113.61248 * 34.15019 * 19 18 17 21 21 C 1.53959 * 87.01754 * 220.04893 * 20 19 18 22 22 C 1.53775 * 87.11029 * 25.36348 * 21 20 19 23 23 H 0.96997 * 120.00072 * 0.02562 * 1 2 3 24 24 H 1.09002 * 110.74042 * 25.64171 * 11 9 7 25 25 H 1.08991 * 110.74444 * 148.98438 * 11 9 7 26 26 H 1.08002 * 119.96221 * 0.20764 * 13 12 11 27 27 H 1.08005 * 120.06114 * 179.97438 * 14 13 12 28 28 H 1.08005 * 119.87159 * 179.86608 * 15 14 13 29 29 H 1.08003 * 119.89641 * 180.02562 * 16 15 14 30 30 H 1.08996 * 112.85040 * 165.34211 * 19 18 17 31 31 H 1.08991 * 113.61572 * 334.56860 * 20 19 18 32 32 H 1.08998 * 113.61225 * 105.47275 * 20 19 18 33 33 H 1.09004 * 113.53224 * 270.81193 * 21 20 19 34 34 H 1.08998 * 113.66536 * 139.93367 * 21 20 19 35 35 H 1.09005 * 113.61330 * 220.08935 * 22 21 20 36 36 H 1.09002 * 113.69486 * 89.20177 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5742 -2.5530 -0.8521 11 6 0.4830 -2.6890 1.3287 12 6 1.4669 -3.4695 2.1775 13 6 1.5196 -3.7030 3.5357 14 6 2.5463 -4.4604 4.0695 15 6 3.5208 -4.9830 3.2388 16 6 3.4712 -4.7546 1.8797 17 6 2.4379 -3.9949 1.3335 18 7 2.1865 -3.6449 0.0011 19 6 1.6283 -4.7805 -0.7451 20 6 0.7176 -5.6859 0.1011 21 6 1.3638 -6.8793 -0.6259 22 6 2.5879 -5.9771 -0.8547 23 1 -0.4850 0.8400 -0.0004 24 1 0.2583 -1.7253 1.7859 25 1 -0.4292 -3.2636 1.1684 26 1 0.7583 -3.2937 4.1833 27 1 2.5875 -4.6427 5.1332 28 1 4.3238 -5.5726 3.6562 29 1 4.2351 -5.1659 1.2364 30 1 1.1875 -4.4856 -1.6974 31 1 0.9387 -5.6528 1.1679 32 1 -0.3434 -5.5635 -0.1163 33 1 0.8496 -7.1590 -1.5454 34 1 1.5645 -7.7310 0.0240 35 1 3.0346 -6.0895 -1.8426 36 1 3.3223 -6.0229 -0.0505 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259964544.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:13 Heat of formation + Delta-G solvation = 64.241629 kcal Electronic energy + Delta-G solvation = -17920.381605 eV Core-core repulsion = 15370.224852 eV Total energy + Delta-G solvation = -2550.156753 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.60397 -37.46804 -35.45017 -32.47554 -30.94279 -28.76968 -27.91152 -25.39422 -24.97450 -23.85538 -21.66560 -20.63404 -20.01587 -18.78308 -16.59807 -15.93250 -15.31362 -15.09356 -14.80410 -14.25638 -14.12767 -13.09610 -13.05440 -12.56817 -12.25669 -12.10194 -11.82272 -11.78375 -11.48732 -11.12141 -10.94475 -10.87138 -10.55792 -10.36786 -10.27314 -10.11785 -9.93478 -9.69841 -9.14790 -8.50457 -8.49564 -8.07488 -6.94518 -6.06843 -4.09994 2.01288 2.04862 3.30408 3.36625 3.42030 4.34604 4.39052 4.67627 5.01735 5.04571 5.22215 5.26863 5.36486 5.49270 5.51798 5.65426 5.91094 5.99580 6.04722 6.07260 6.16668 6.19390 6.25400 6.31788 6.48693 6.57766 6.61147 6.70173 6.82148 6.95811 7.05237 7.18857 7.28265 7.44867 7.65650 7.81989 8.05119 8.25095 8.42222 8.96526 9.54681 11.00908 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.022610 B = 0.009137 C = 0.007673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.073154 B = 3063.844589 C = 3648.376463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.495 4.495 8 H 0.064 0.936 9 C 0.221 3.779 10 H 0.049 0.951 11 C -0.095 4.095 12 C -0.114 4.114 13 C -0.103 4.103 14 C -0.148 4.148 15 C -0.121 4.121 16 C -0.131 4.131 17 C 0.124 3.876 18 N -0.486 5.486 19 C 0.074 3.926 20 C -0.173 4.173 21 C -0.139 4.139 22 C -0.140 4.140 23 H 0.262 0.738 24 H 0.093 0.907 25 H 0.048 0.952 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.170 -10.762 2.853 11.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.534 4.534 8 H 0.082 0.918 9 C 0.116 3.884 10 H 0.067 0.933 11 C -0.134 4.134 12 C -0.116 4.116 13 C -0.122 4.122 14 C -0.167 4.167 15 C -0.139 4.139 16 C -0.151 4.151 17 C 0.026 3.974 18 N -0.201 5.201 19 C -0.033 4.033 20 C -0.212 4.212 21 C -0.177 4.177 22 C -0.178 4.178 23 H 0.072 0.928 24 H 0.111 0.889 25 H 0.067 0.933 26 H 0.129 0.871 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.120 0.880 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.474 -10.461 2.501 11.037 hybrid contribution -0.287 0.826 0.442 0.980 sum 2.187 -9.635 2.944 10.309 Atomic orbital electron populations 1.69950 1.05840 1.26859 1.50680 1.24923 0.94904 0.99139 0.95173 0.86494 0.79867 0.82963 0.78139 1.20610 1.21265 1.19827 1.20996 0.93554 0.88932 1.49892 0.91778 1.20208 0.88219 0.87040 0.92913 0.93287 1.21824 0.95006 0.98851 0.97683 1.21473 0.97164 0.99028 0.93977 1.20387 0.98667 0.99240 0.93915 1.20827 0.96207 1.00839 0.98839 1.20695 0.98966 1.01157 0.93098 1.20480 0.98090 1.01864 0.94621 1.19501 0.93414 0.94284 0.90152 1.60193 1.44939 1.06103 1.08872 1.23202 0.94220 0.88628 0.97281 1.23739 0.99621 0.97097 1.00761 1.22718 0.98026 0.96742 1.00246 1.23247 0.97013 0.95505 1.02066 0.92848 0.88886 0.93337 0.87144 0.86967 0.86835 0.86748 0.88047 0.89497 0.92005 0.90659 0.91932 0.91748 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.07 12.31 55.43 0.68 -24.39 16 2 C 0.06 1.65 5.15 -17.82 -0.09 1.56 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.50 -13.69 8.78 -34.44 -0.30 -13.99 16 8 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 9 C 0.22 5.50 2.55 -67.47 -0.17 5.33 16 10 H 0.05 1.30 7.61 -51.93 -0.39 0.90 16 11 C -0.09 -2.23 5.70 -26.61 -0.15 -2.38 16 12 C -0.11 -2.42 5.22 -104.04 -0.54 -2.96 16 13 C -0.10 -1.92 10.03 -39.68 -0.40 -2.32 16 14 C -0.15 -2.41 10.06 -39.53 -0.40 -2.81 16 15 C -0.12 -1.93 10.02 -39.68 -0.40 -2.32 16 16 C -0.13 -2.35 8.75 -39.27 -0.34 -2.69 16 17 C 0.12 2.56 3.65 -83.41 -0.30 2.25 16 18 N -0.49 -10.62 4.87 -154.48 -0.75 -11.37 16 19 C 0.07 1.34 3.77 -66.89 -0.25 1.09 16 20 C -0.17 -2.86 6.68 -25.82 -0.17 -3.03 16 21 C -0.14 -1.91 8.09 -25.83 -0.21 -2.11 16 22 C -0.14 -2.14 7.60 -25.92 -0.20 -2.33 16 23 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 24 H 0.09 2.42 6.94 -51.93 -0.36 2.06 16 25 H 0.05 1.08 8.09 -51.93 -0.42 0.66 16 26 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 27 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 28 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 29 H 0.11 1.87 6.67 -52.48 -0.35 1.52 16 30 H 0.10 1.84 7.86 -51.93 -0.41 1.44 16 31 H 0.09 1.57 5.76 -51.93 -0.30 1.27 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.36 4.96 -51.93 -0.26 1.10 16 LS Contribution 284.83 15.07 4.29 4.29 Total: -1.00 -28.25 284.83 -9.73 -37.98 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -4.99 Total: 3.73 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -3.93 Total: -26.71 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: -0.07 Total: -35.76 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.25 -9.73 -37.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259964544.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.221 kcal (2) G-P(sol) polarization free energy of solvation -28.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds