Wall clock time and date at job start Mon Mar 30 2020 05:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99939 * 2 1 4 4 H 1.48501 * 109.47004 * 269.99580 * 3 2 1 5 5 H 1.48503 * 109.46970 * 29.99079 * 3 2 1 6 6 H 1.48493 * 109.47515 * 149.99703 * 3 2 1 7 7 C 1.37871 * 120.00468 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00798 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99740 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.68832 * 56.70975 * 9 7 2 11 11 C 1.54601 * 110.77957 * 293.21303 * 9 7 2 12 12 C 1.51581 * 102.81292 * 267.31280 * 11 9 7 13 13 C 1.37913 * 131.56140 * 163.82725 * 12 11 9 14 14 C 1.38304 * 120.08007 * 180.22767 * 13 12 11 15 15 C 1.38301 * 119.88186 * 0.02562 * 14 13 12 16 16 C 1.37913 * 120.26421 * 359.84608 * 15 14 13 17 17 C 1.38964 * 107.95058 * 343.80520 * 12 11 9 18 18 N 1.40040 * 110.96878 * 359.56777 * 17 12 11 19 19 C 1.46902 * 110.99881 * 256.26308 * 18 17 12 20 20 C 1.53792 * 113.61248 * 34.15019 * 19 18 17 21 21 C 1.53959 * 87.01754 * 220.04893 * 20 19 18 22 22 C 1.53775 * 87.11029 * 25.36348 * 21 20 19 23 23 H 0.96997 * 120.00072 * 0.02562 * 1 2 3 24 24 H 1.09002 * 110.74042 * 25.64171 * 11 9 7 25 25 H 1.08991 * 110.74444 * 148.98438 * 11 9 7 26 26 H 1.08002 * 119.96221 * 0.20764 * 13 12 11 27 27 H 1.08005 * 120.06114 * 179.97438 * 14 13 12 28 28 H 1.08005 * 119.87159 * 179.86608 * 15 14 13 29 29 H 1.08003 * 119.89641 * 180.02562 * 16 15 14 30 30 H 1.08996 * 112.85040 * 165.34211 * 19 18 17 31 31 H 1.08991 * 113.61572 * 334.56860 * 20 19 18 32 32 H 1.08998 * 113.61225 * 105.47275 * 20 19 18 33 33 H 1.09004 * 113.53224 * 270.81193 * 21 20 19 34 34 H 1.08998 * 113.66536 * 139.93367 * 21 20 19 35 35 H 1.09005 * 113.61330 * 220.08935 * 22 21 20 36 36 H 1.09002 * 113.69486 * 89.20177 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5742 -2.5530 -0.8521 11 6 0.4830 -2.6890 1.3287 12 6 1.4669 -3.4695 2.1775 13 6 1.5196 -3.7030 3.5357 14 6 2.5463 -4.4604 4.0695 15 6 3.5208 -4.9830 3.2388 16 6 3.4712 -4.7546 1.8797 17 6 2.4379 -3.9949 1.3335 18 7 2.1865 -3.6449 0.0011 19 6 1.6283 -4.7805 -0.7451 20 6 0.7176 -5.6859 0.1011 21 6 1.3638 -6.8793 -0.6259 22 6 2.5879 -5.9771 -0.8547 23 1 -0.4850 0.8400 -0.0004 24 1 0.2583 -1.7253 1.7859 25 1 -0.4292 -3.2636 1.1684 26 1 0.7583 -3.2937 4.1833 27 1 2.5875 -4.6427 5.1332 28 1 4.3238 -5.5726 3.6562 29 1 4.2351 -5.1659 1.2364 30 1 1.1875 -4.4856 -1.6974 31 1 0.9387 -5.6528 1.1679 32 1 -0.3434 -5.5635 -0.1163 33 1 0.8496 -7.1590 -1.5454 34 1 1.5645 -7.7310 0.0240 35 1 3.0346 -6.0895 -1.8426 36 1 3.3223 -6.0229 -0.0505 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259964544.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:13 Heat of formation + Delta-G solvation = 49.014836 kcal Electronic energy + Delta-G solvation = -17921.041889 eV Core-core repulsion = 15370.224852 eV Total energy + Delta-G solvation = -2550.817036 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.11144 -38.79777 -37.03400 -34.47436 -32.45432 -30.28748 -29.62468 -27.11514 -26.45090 -25.24679 -23.27052 -22.06349 -21.69547 -20.13249 -18.51845 -17.48075 -17.01303 -16.46032 -16.32838 -15.92709 -15.66231 -14.77591 -14.49902 -14.06341 -13.73917 -13.65562 -13.36569 -13.23081 -13.06764 -12.85098 -12.65712 -12.61319 -12.13389 -12.12983 -11.78908 -11.64601 -11.40059 -11.20849 -10.95368 -10.60035 -10.00630 -9.53890 -8.54200 -8.15450 -6.28776 0.61105 0.62225 1.38364 1.38698 1.49928 2.38031 2.95286 3.06326 3.16146 3.74198 3.80413 3.97733 3.98943 4.10560 4.22462 4.29886 4.54036 4.60209 4.65865 4.72704 4.77998 4.84775 4.87614 4.97619 5.04489 5.10561 5.13757 5.24812 5.28749 5.51017 5.52498 5.63401 5.70225 5.72657 5.86173 6.11260 6.16548 6.47945 6.72187 6.81146 7.39464 8.88903 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.022610 B = 0.009137 C = 0.007673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.073154 B = 3063.844589 C = 3648.376463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.016 3.984 3 Si 0.958 3.042 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.047 0.953 9 C 0.222 3.778 10 H 0.018 0.982 11 C -0.081 4.081 12 C -0.148 4.148 13 C -0.113 4.113 14 C -0.140 4.140 15 C -0.107 4.107 16 C -0.136 4.136 17 C 0.105 3.895 18 N -0.498 5.498 19 C 0.053 3.947 20 C -0.172 4.172 21 C -0.118 4.118 22 C -0.130 4.130 23 H 0.264 0.736 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.119 0.881 27 H 0.151 0.849 28 H 0.157 0.843 29 H 0.131 0.869 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.969 -12.527 4.161 13.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.183 4.183 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.066 0.934 9 C 0.116 3.884 10 H 0.036 0.964 11 C -0.120 4.120 12 C -0.150 4.150 13 C -0.131 4.131 14 C -0.158 4.158 15 C -0.125 4.125 16 C -0.155 4.155 17 C 0.008 3.992 18 N -0.214 5.214 19 C -0.054 4.054 20 C -0.211 4.211 21 C -0.156 4.156 22 C -0.168 4.168 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.137 0.863 27 H 0.169 0.831 28 H 0.175 0.825 29 H 0.149 0.851 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.275 -12.247 3.808 13.519 hybrid contribution -0.841 1.333 0.075 1.578 sum 3.434 -10.914 3.882 12.082 Atomic orbital electron populations 1.70055 1.07004 1.27634 1.51068 1.25656 0.95723 1.02191 0.94718 0.85548 0.78534 0.79138 0.78401 1.19795 1.20468 1.19845 1.21177 0.92866 0.90713 1.50390 0.93440 1.19903 0.88353 0.87852 0.92279 0.96449 1.21457 0.95546 0.97443 0.97575 1.21366 0.97392 1.00883 0.95357 1.20664 0.99942 0.99664 0.92879 1.21263 0.94731 0.98956 1.00863 1.21202 0.99389 0.99909 0.92006 1.20780 0.97437 1.01293 0.96030 1.19676 0.94490 0.95737 0.89269 1.60151 1.44358 1.06494 1.10361 1.23443 0.96411 0.88707 0.96831 1.23649 0.99012 0.98432 0.99988 1.22666 0.96270 0.95903 1.00762 1.23195 0.97106 0.93564 1.02906 0.92700 0.92461 0.93872 0.86260 0.83108 0.82547 0.85109 0.89298 0.90740 0.92756 0.88918 0.89935 0.90360 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.60 12.31 21.44 0.26 -53.34 16 2 C 0.02 0.93 5.15 84.65 0.44 1.36 16 3 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.51 -29.67 8.78 25.60 0.22 -29.45 16 8 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 9 C 0.22 11.74 2.55 44.52 0.11 11.85 16 10 H 0.02 1.01 7.61 -2.39 -0.02 0.99 16 11 C -0.08 -4.05 5.70 30.67 0.17 -3.87 16 12 C -0.15 -6.38 5.22 -19.49 -0.10 -6.48 16 13 C -0.11 -4.07 10.03 22.21 0.22 -3.85 16 14 C -0.14 -4.02 10.06 22.30 0.22 -3.79 16 15 C -0.11 -2.95 10.02 22.21 0.22 -2.73 16 16 C -0.14 -4.54 8.75 22.47 0.20 -4.35 16 17 C 0.11 4.34 3.65 38.28 0.14 4.48 16 18 N -0.50 -22.47 4.87 -642.65 -3.13 -25.60 16 19 C 0.05 1.95 3.77 45.44 0.17 2.12 16 20 C -0.17 -5.66 6.68 31.19 0.21 -5.45 16 21 C -0.12 -2.95 8.09 31.18 0.25 -2.70 16 22 C -0.13 -3.72 7.60 31.12 0.24 -3.49 16 23 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 24 H 0.06 3.19 6.94 -2.39 -0.02 3.17 16 25 H 0.04 2.08 8.09 -2.39 -0.02 2.06 16 26 H 0.12 3.95 8.06 -2.91 -0.02 3.93 16 27 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 28 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 29 H 0.13 3.89 6.67 -2.91 -0.02 3.87 16 30 H 0.09 3.41 7.86 -2.39 -0.02 3.40 16 31 H 0.07 2.67 5.76 -2.39 -0.01 2.65 16 32 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.09 2.53 4.96 -2.39 -0.01 2.52 16 Total: -1.00 -63.99 284.83 2.94 -61.04 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 1.06 Total: 17.18 kcal Atomic # 6 Polarization: -49.06 SS G_CDS: 2.72 Total: -46.34 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -2.86 Total: -78.94 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -63.99 2.94 -61.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259964544.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.058 kcal (2) G-P(sol) polarization free energy of solvation -63.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds