Wall clock time and date at job start Mon Mar 30 2020 05:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99628 * 2 1 4 4 H 1.48503 * 109.46844 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46782 * 299.99365 * 3 2 1 6 6 H 1.48498 * 109.47327 * 59.99271 * 3 2 1 7 7 C 1.37877 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99967 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99887 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.69441 * 302.09490 * 9 7 2 11 11 C 1.54597 * 110.77998 * 65.39730 * 9 7 2 12 12 C 1.51569 * 102.85420 * 92.99315 * 11 9 7 13 13 C 1.37920 * 131.56319 * 196.07522 * 12 11 9 14 14 C 1.38304 * 120.07911 * 179.34456 * 13 12 11 15 15 C 1.38308 * 119.88743 * 359.97438 * 14 13 12 16 16 C 1.37912 * 120.26052 * 0.14542 * 15 14 13 17 17 C 1.38964 * 107.95560 * 15.74384 * 12 11 9 18 18 N 1.40036 * 110.95598 * 1.07036 * 17 12 11 19 19 C 1.46899 * 110.99994 * 219.55613 * 18 17 12 20 20 C 1.53776 * 113.61014 * 274.00501 * 19 18 17 21 21 C 1.53779 * 87.08466 * 220.02044 * 20 19 18 22 22 C 1.53779 * 113.61294 * 176.51167 * 19 18 17 23 23 H 0.96998 * 120.00221 * 0.02562 * 1 2 3 24 24 H 1.09000 * 110.73235 * 334.65355 * 11 9 7 25 25 H 1.09001 * 110.89055 * 211.41260 * 11 9 7 26 26 H 1.07996 * 119.96043 * 359.37244 * 13 12 11 27 27 H 1.08008 * 120.05801 * 180.02562 * 14 13 12 28 28 H 1.07997 * 119.86649 * 180.17722 * 15 14 13 29 29 H 1.07997 * 119.89941 * 179.97438 * 16 15 14 30 30 H 1.08997 * 112.85423 * 45.31551 * 19 18 17 31 31 H 1.09001 * 113.61723 * 334.57134 * 20 19 18 32 32 H 1.09005 * 113.61190 * 105.47303 * 20 19 18 33 33 H 1.08999 * 113.61573 * 270.88724 * 21 20 19 34 34 H 1.09003 * 113.61710 * 139.98288 * 21 20 19 35 35 H 1.09004 * 113.61590 * 254.52880 * 22 19 18 36 36 H 1.09006 * 113.61357 * 25.34838 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5890 -2.5616 0.8641 11 6 0.4562 -2.6735 -1.3139 12 6 1.4188 -3.4507 -2.1895 13 6 1.4420 -3.6733 -3.5504 14 6 2.4591 -4.4228 -4.1130 15 6 3.4538 -4.9485 -3.3085 16 6 3.4339 -4.7309 -1.9468 17 6 2.4099 -3.9800 -1.3717 18 7 2.1829 -3.6475 -0.0304 19 6 3.4426 -3.3219 0.6516 20 6 4.1738 -4.5519 1.2148 21 6 4.5051 -3.6931 2.4467 22 6 3.2543 -2.8650 2.1079 23 1 -0.4850 0.8400 -0.0004 24 1 0.2271 -1.7047 -1.7577 25 1 -0.4569 -3.2439 -1.1432 26 1 0.6652 -3.2616 -4.1776 27 1 2.4772 -4.5966 -5.1788 28 1 4.2495 -5.5313 -3.7485 29 1 4.2133 -5.1445 -1.3241 30 1 4.0826 -2.6618 0.0662 31 1 3.5131 -5.3911 1.4323 32 1 5.0509 -4.8414 0.6358 33 1 5.4367 -3.1353 2.3524 34 1 4.4282 -4.2343 3.3897 35 1 3.3888 -1.7927 2.2500 36 1 2.3414 -3.2419 2.5692 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259964551.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:15 Heat of formation + Delta-G solvation = 43.544366 kcal Electronic energy + Delta-G solvation = -17876.789212 eV Core-core repulsion = 15325.734959 eV Total energy + Delta-G solvation = -2551.054254 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.68239 -39.11639 -36.95295 -34.51442 -32.64691 -30.36446 -29.55185 -27.03971 -26.30574 -25.21180 -23.12765 -21.82950 -21.69721 -20.31779 -18.42906 -17.78065 -16.96892 -16.22101 -16.10481 -15.96889 -15.59957 -14.82022 -14.57216 -14.20869 -13.96301 -13.50674 -13.22679 -13.11638 -12.93686 -12.69170 -12.62299 -12.39857 -12.08500 -12.06480 -11.89792 -11.63440 -11.44467 -11.15199 -10.93866 -10.63320 -10.31910 -9.52988 -8.52121 -8.06680 -6.30818 0.64408 0.68144 1.34294 1.37421 1.46921 2.36276 2.93555 3.10949 3.34791 3.78584 3.89272 3.92943 4.10865 4.16400 4.26465 4.32770 4.55497 4.66270 4.73917 4.81356 4.86467 4.89149 4.92846 4.99323 5.09644 5.21823 5.25812 5.32452 5.43046 5.49831 5.60023 5.62620 5.73607 5.75740 5.84132 6.02662 6.16351 6.33754 6.69236 6.82139 7.37989 8.88182 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.017272 B = 0.011364 C = 0.008019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.719138 B = 2463.273309 C = 3490.740923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.024 3.976 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.278 1.278 7 C -0.532 4.532 8 H 0.061 0.939 9 C 0.218 3.782 10 H 0.024 0.976 11 C -0.066 4.066 12 C -0.155 4.155 13 C -0.104 4.104 14 C -0.154 4.154 15 C -0.101 4.101 16 C -0.157 4.157 17 C 0.092 3.908 18 N -0.478 5.478 19 C 0.064 3.936 20 C -0.120 4.120 21 C -0.126 4.126 22 C -0.121 4.121 23 H 0.263 0.737 24 H 0.059 0.941 25 H 0.044 0.956 26 H 0.121 0.879 27 H 0.150 0.850 28 H 0.155 0.845 29 H 0.130 0.870 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.228 -8.155 -2.396 11.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.571 4.571 8 H 0.079 0.921 9 C 0.112 3.888 10 H 0.042 0.958 11 C -0.105 4.105 12 C -0.158 4.158 13 C -0.122 4.122 14 C -0.173 4.173 15 C -0.119 4.119 16 C -0.177 4.177 17 C -0.007 4.007 18 N -0.191 5.191 19 C -0.043 4.043 20 C -0.157 4.157 21 C -0.164 4.164 22 C -0.159 4.159 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.139 0.861 27 H 0.167 0.833 28 H 0.172 0.828 29 H 0.148 0.852 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.845 -8.430 -1.997 11.688 hybrid contribution -0.147 1.931 -0.226 1.950 sum 7.698 -6.499 -2.224 10.317 Atomic orbital electron populations 1.70067 1.07076 1.27467 1.50589 1.25589 0.95504 1.01954 0.94559 0.85657 0.79128 0.80176 0.77667 1.19333 1.20841 1.20339 1.21654 0.93191 0.91145 1.51096 0.92136 1.19992 0.89489 0.86191 0.93099 0.95846 1.21161 0.95577 0.97471 0.96241 1.20978 0.99102 1.01021 0.94690 1.20642 0.99691 0.99252 0.92639 1.21213 0.95112 1.00143 1.00792 1.21171 0.99090 0.99354 0.92266 1.20724 0.98242 1.02780 0.95998 1.20070 0.95020 0.96297 0.89329 1.61083 1.12722 1.35163 1.10096 1.23056 0.89580 0.97435 0.94201 1.23012 0.99408 0.96225 0.97089 1.22727 0.97268 0.97923 0.98446 1.22826 0.98568 0.99536 0.94925 0.92765 0.92256 0.93767 0.86085 0.83276 0.82753 0.85181 0.93128 0.89955 0.90351 0.89323 0.89630 0.92946 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.10 12.19 21.45 0.26 -51.84 16 2 C 0.02 1.32 5.13 84.65 0.43 1.76 16 3 Si 0.95 43.38 29.54 68.60 2.03 45.41 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.53 -28.63 6.92 25.60 0.18 -28.46 16 8 H 0.06 3.26 5.42 -2.91 -0.02 3.25 16 9 C 0.22 11.24 2.62 44.52 0.12 11.36 16 10 H 0.02 1.35 8.14 -2.39 -0.02 1.33 16 11 C -0.07 -3.33 6.21 30.67 0.19 -3.14 16 12 C -0.16 -6.90 6.23 -19.49 -0.12 -7.02 16 13 C -0.10 -3.84 10.03 22.21 0.22 -3.62 16 14 C -0.15 -4.61 10.06 22.30 0.22 -4.38 16 15 C -0.10 -2.91 10.02 22.21 0.22 -2.68 16 16 C -0.16 -5.39 9.47 22.47 0.21 -5.18 16 17 C 0.09 3.91 5.86 38.28 0.22 4.14 16 18 N -0.48 -21.35 5.00 -642.65 -3.21 -24.56 16 19 C 0.06 2.51 1.69 45.44 0.08 2.58 16 20 C -0.12 -3.55 6.86 31.12 0.21 -3.34 16 21 C -0.13 -3.46 8.08 31.12 0.25 -3.21 16 22 C -0.12 -4.50 6.32 31.12 0.20 -4.31 16 23 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 24 H 0.06 3.27 6.82 -2.39 -0.02 3.26 16 25 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.12 4.08 8.06 -2.91 -0.02 4.06 16 27 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 28 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 29 H 0.13 3.90 6.49 -2.91 -0.02 3.88 16 30 H 0.05 2.18 6.76 -2.39 -0.02 2.16 16 31 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.08 2.00 7.54 -2.38 -0.02 1.98 16 33 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.05 2.12 7.73 -2.38 -0.02 2.10 16 36 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 Total: -1.00 -61.01 285.65 2.78 -58.23 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 1.06 Total: 18.27 kcal Atomic # 6 Polarization: -48.15 SS G_CDS: 2.64 Total: -45.51 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -2.95 Total: -76.40 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -61.01 2.78 -58.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259964551.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.773 kcal (2) G-P(sol) polarization free energy of solvation -61.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds