Wall clock time and date at job start Mon Mar 30 2020 05:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99984 * 2 1 4 4 H 1.48499 * 109.47176 * 270.00369 * 3 2 1 5 5 H 1.48500 * 109.46802 * 30.00115 * 3 2 1 6 6 H 1.48493 * 109.47210 * 150.00015 * 3 2 1 7 7 C 1.37879 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99905 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99632 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.00596 * 298.77827 * 9 7 2 11 11 C 1.53849 * 109.95039 * 60.00281 * 9 7 2 12 12 C 1.52822 * 110.60764 * 177.13924 * 11 9 7 13 13 C 1.53772 * 110.72506 * 306.09048 * 12 11 9 14 14 N 1.44564 * 107.99259 * 55.54199 * 13 12 11 15 15 C 1.36425 * 122.25360 * 166.23781 * 14 13 12 16 16 C 1.39524 * 130.88161 * 334.78661 * 15 14 13 17 17 C 1.38522 * 117.52949 * 181.02786 * 16 15 14 18 18 C 1.38005 * 121.96455 * 0.02562 * 17 16 15 19 19 C 1.39012 * 121.34529 * 359.56872 * 18 17 16 20 20 C 1.37728 * 117.23416 * 0.02562 * 19 18 17 21 21 C 1.51179 * 130.03837 * 181.58894 * 20 19 18 22 22 C 1.48563 * 110.95451 * 295.65254 * 14 13 12 23 23 H 1.09001 * 111.84889 * 306.65510 * 22 14 13 24 24 H 0.96993 * 120.00098 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.24448 * 56.85943 * 11 9 7 26 26 H 1.09001 * 109.24225 * 297.41563 * 11 9 7 27 27 H 1.09000 * 109.22511 * 66.41310 * 12 11 9 28 28 H 1.09002 * 109.22934 * 185.81381 * 12 11 9 29 29 H 1.08997 * 109.75779 * 175.16362 * 13 12 11 30 30 H 1.08998 * 109.76000 * 295.91916 * 13 12 11 31 31 H 1.07995 * 121.23219 * 1.00726 * 16 15 14 32 32 H 1.08005 * 119.02050 * 180.02562 * 17 16 15 33 33 H 1.07999 * 119.33233 * 179.59010 * 18 17 16 34 34 H 1.07997 * 121.38468 * 179.97438 * 19 18 17 35 35 H 1.09002 * 111.04563 * 277.83729 * 21 20 19 36 36 H 1.09008 * 111.04525 * 41.75320 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6380 -2.5757 0.8974 11 6 0.3620 -2.5919 -1.2527 12 6 -0.3556 -3.9402 -1.3041 13 6 0.6514 -5.0971 -1.1944 14 7 1.4201 -4.9068 0.0150 15 6 2.2010 -5.8925 0.5440 16 6 2.1200 -7.2809 0.4317 17 6 3.0614 -8.0344 1.1135 18 6 4.0490 -7.4500 1.8800 19 6 4.1510 -6.0686 1.9974 20 6 3.2255 -5.3083 1.3175 21 6 3.0871 -3.8063 1.2156 22 6 2.2329 -3.6656 -0.0618 23 1 2.8508 -3.6402 -0.9594 24 1 -0.4850 0.8400 0.0004 25 1 0.9817 -2.4806 -2.1424 26 1 -0.3780 -1.7919 -1.2279 27 1 -1.0641 -4.0014 -0.4780 28 1 -0.8959 -4.0236 -2.2471 29 1 0.1180 -6.0465 -1.1464 30 1 1.3160 -5.0904 -2.0583 31 1 1.3516 -7.7506 -0.1643 32 1 3.0213 -9.1114 1.0430 33 1 4.7573 -8.0787 2.3991 34 1 4.9234 -5.6107 2.5974 35 1 2.5657 -3.4015 2.0831 36 1 4.0600 -3.3311 1.0896 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259966054.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:03 Heat of formation + Delta-G solvation = 28.810710 kcal Electronic energy + Delta-G solvation = -17598.395634 eV Core-core repulsion = 15046.702481 eV Total energy + Delta-G solvation = -2551.693153 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.53866 -37.20593 -33.94129 -33.22528 -31.55644 -29.82446 -28.27181 -26.59493 -25.02993 -23.15270 -20.96684 -20.69277 -20.43735 -18.97001 -16.84360 -16.16555 -15.23849 -15.09819 -14.69423 -14.04638 -13.78344 -13.66827 -13.06827 -12.76725 -12.55286 -12.23485 -12.00092 -11.69537 -11.56802 -11.09848 -10.97357 -10.82112 -10.66875 -10.42638 -10.21452 -9.94433 -9.89688 -9.50612 -9.02122 -8.78697 -8.39865 -8.37023 -6.90447 -6.03226 -4.09796 1.77027 1.84820 3.28263 3.35658 3.38278 4.00706 4.29435 4.45072 5.00083 5.25776 5.27435 5.37617 5.40819 5.58389 5.68892 5.75302 5.83246 5.89790 5.96982 5.97902 6.20525 6.34293 6.44636 6.53254 6.54994 6.69070 6.72342 6.84007 6.89766 6.95186 7.08654 7.22165 7.35488 7.53251 7.68693 7.97235 8.03929 8.11319 8.37967 8.92945 9.55171 11.02916 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032014 B = 0.007147 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.394709 B = 3916.984901 C = 4655.711858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.067 3.933 10 H 0.039 0.961 11 C -0.116 4.116 12 C -0.118 4.118 13 C 0.082 3.918 14 N -0.517 5.517 15 C 0.155 3.845 16 C -0.180 4.180 17 C -0.090 4.090 18 C -0.179 4.179 19 C -0.073 4.073 20 C -0.156 4.156 21 C -0.068 4.068 22 C 0.104 3.896 23 H 0.059 0.941 24 H 0.260 0.740 25 H 0.033 0.967 26 H 0.094 0.906 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.122 0.878 35 H 0.088 0.912 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.884 -10.972 -0.034 11.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.048 3.952 10 H 0.057 0.943 11 C -0.154 4.154 12 C -0.156 4.156 13 C -0.044 4.044 14 N -0.225 5.225 15 C 0.051 3.949 16 C -0.203 4.203 17 C -0.108 4.108 18 C -0.199 4.199 19 C -0.092 4.092 20 C -0.160 4.160 21 C -0.105 4.105 22 C 0.000 4.000 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.112 0.888 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.136 0.864 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.140 0.860 35 H 0.106 0.894 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.285 -10.710 0.149 11.204 hybrid contribution 0.713 0.665 -0.464 1.080 sum 3.997 -10.045 -0.315 10.816 Atomic orbital electron populations 1.69883 1.05887 1.26485 1.50391 1.24936 0.94812 0.99007 0.94946 0.86616 0.79923 0.83537 0.78068 1.20750 1.21256 1.19870 1.21064 0.92906 0.90232 1.51034 0.92479 1.18782 0.91680 0.89782 0.94954 0.94255 1.21759 1.00356 0.94618 0.98669 1.21805 0.97431 0.95904 1.00454 1.21669 0.95418 0.99355 0.87976 1.55229 1.29213 1.05626 1.32398 1.19209 0.89662 0.90894 0.95165 1.20536 1.02592 0.90860 1.06291 1.20671 0.94692 0.98833 0.96637 1.20786 1.00881 0.94549 1.03699 1.20585 0.97584 0.93081 0.97929 1.21046 0.96709 0.96534 1.01706 1.21087 1.00227 0.90136 0.99054 1.23176 0.92850 0.87793 0.96157 0.92285 0.92962 0.94830 0.88761 0.92115 0.92923 0.91805 0.94395 0.86448 0.87143 0.87163 0.85963 0.89405 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.61 11.38 55.43 0.63 -23.98 16 2 C 0.06 1.73 5.31 -17.82 -0.09 1.63 16 3 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.51 -13.42 8.29 -34.44 -0.29 -13.71 16 8 H 0.06 1.47 7.75 -52.49 -0.41 1.06 16 9 C 0.07 1.61 1.84 -91.54 -0.17 1.44 16 10 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 11 C -0.12 -2.64 4.98 -26.38 -0.13 -2.77 16 12 C -0.12 -2.23 6.08 -26.42 -0.16 -2.39 16 13 C 0.08 1.43 5.96 -4.67 -0.03 1.40 16 14 N -0.52 -10.05 3.88 -163.22 -0.63 -10.69 16 15 C 0.16 2.84 6.34 -84.28 -0.53 2.30 16 16 C -0.18 -2.85 9.95 -39.00 -0.39 -3.24 16 17 C -0.09 -1.26 9.93 -39.56 -0.39 -1.66 16 18 C -0.18 -2.52 9.99 -39.38 -0.39 -2.91 16 19 C -0.07 -1.13 10.23 -39.48 -0.40 -1.53 16 20 C -0.16 -2.81 6.12 -103.51 -0.63 -3.45 16 21 C -0.07 -1.31 6.32 -26.96 -0.17 -1.48 16 22 C 0.10 2.17 2.39 -66.31 -0.16 2.01 16 23 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 24 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.09 2.40 6.19 -51.93 -0.32 2.08 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.99 7.78 -51.93 -0.40 0.58 16 30 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 31 H 0.12 1.65 7.79 -52.49 -0.41 1.25 16 32 H 0.11 1.25 8.06 -52.48 -0.42 0.82 16 33 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.09 1.79 8.02 -51.93 -0.42 1.37 16 36 H 0.07 1.35 8.14 -51.92 -0.42 0.92 16 LS Contribution 286.82 15.07 4.32 4.32 Total: -1.00 -27.37 286.82 -9.96 -37.33 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -5.32 Total: 1.69 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -3.94 Total: -24.34 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.00 Total: -34.67 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.37 -9.96 -37.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966054.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.145 kcal (2) G-P(sol) polarization free energy of solvation -27.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds