Wall clock time and date at job start Mon Mar 30 2020 05:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99984 * 2 1 4 4 H 1.48499 * 109.47176 * 270.00369 * 3 2 1 5 5 H 1.48500 * 109.46802 * 30.00115 * 3 2 1 6 6 H 1.48493 * 109.47210 * 150.00015 * 3 2 1 7 7 C 1.37879 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99905 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99632 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.00596 * 298.77827 * 9 7 2 11 11 C 1.53849 * 109.95039 * 60.00281 * 9 7 2 12 12 C 1.52822 * 110.60764 * 177.13924 * 11 9 7 13 13 C 1.53772 * 110.72506 * 306.09048 * 12 11 9 14 14 N 1.44564 * 107.99259 * 55.54199 * 13 12 11 15 15 C 1.36425 * 122.25360 * 166.23781 * 14 13 12 16 16 C 1.39524 * 130.88161 * 334.78661 * 15 14 13 17 17 C 1.38522 * 117.52949 * 181.02786 * 16 15 14 18 18 C 1.38005 * 121.96455 * 0.02562 * 17 16 15 19 19 C 1.39012 * 121.34529 * 359.56872 * 18 17 16 20 20 C 1.37728 * 117.23416 * 0.02562 * 19 18 17 21 21 C 1.51179 * 130.03837 * 181.58894 * 20 19 18 22 22 C 1.48563 * 110.95451 * 295.65254 * 14 13 12 23 23 H 1.09001 * 111.84889 * 306.65510 * 22 14 13 24 24 H 0.96993 * 120.00098 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.24448 * 56.85943 * 11 9 7 26 26 H 1.09001 * 109.24225 * 297.41563 * 11 9 7 27 27 H 1.09000 * 109.22511 * 66.41310 * 12 11 9 28 28 H 1.09002 * 109.22934 * 185.81381 * 12 11 9 29 29 H 1.08997 * 109.75779 * 175.16362 * 13 12 11 30 30 H 1.08998 * 109.76000 * 295.91916 * 13 12 11 31 31 H 1.07995 * 121.23219 * 1.00726 * 16 15 14 32 32 H 1.08005 * 119.02050 * 180.02562 * 17 16 15 33 33 H 1.07999 * 119.33233 * 179.59010 * 18 17 16 34 34 H 1.07997 * 121.38468 * 179.97438 * 19 18 17 35 35 H 1.09002 * 111.04563 * 277.83729 * 21 20 19 36 36 H 1.09008 * 111.04525 * 41.75320 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6380 -2.5757 0.8974 11 6 0.3620 -2.5919 -1.2527 12 6 -0.3556 -3.9402 -1.3041 13 6 0.6514 -5.0971 -1.1944 14 7 1.4201 -4.9068 0.0150 15 6 2.2010 -5.8925 0.5440 16 6 2.1200 -7.2809 0.4317 17 6 3.0614 -8.0344 1.1135 18 6 4.0490 -7.4500 1.8800 19 6 4.1510 -6.0686 1.9974 20 6 3.2255 -5.3083 1.3175 21 6 3.0871 -3.8063 1.2156 22 6 2.2329 -3.6656 -0.0618 23 1 2.8508 -3.6402 -0.9594 24 1 -0.4850 0.8400 0.0004 25 1 0.9817 -2.4806 -2.1424 26 1 -0.3780 -1.7919 -1.2279 27 1 -1.0641 -4.0014 -0.4780 28 1 -0.8959 -4.0236 -2.2471 29 1 0.1180 -6.0465 -1.1464 30 1 1.3160 -5.0904 -2.0583 31 1 1.3516 -7.7506 -0.1643 32 1 3.0213 -9.1114 1.0430 33 1 4.7573 -8.0787 2.3991 34 1 4.9234 -5.6107 2.5974 35 1 2.5657 -3.4015 2.0831 36 1 4.0600 -3.3311 1.0896 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259966054.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:03 Heat of formation + Delta-G solvation = 15.429428 kcal Electronic energy + Delta-G solvation = -17598.975890 eV Core-core repulsion = 15046.702481 eV Total energy + Delta-G solvation = -2552.273409 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.95099 -38.58577 -35.66331 -34.74292 -33.24905 -31.30583 -29.63896 -28.16881 -26.80797 -24.69229 -22.49792 -22.01732 -21.90809 -20.63393 -18.60651 -17.66062 -16.73277 -16.59258 -16.33634 -15.50780 -15.30769 -14.96577 -14.70266 -14.32642 -14.07376 -13.67363 -13.51268 -13.28627 -13.05408 -12.81426 -12.67885 -12.56784 -12.15091 -11.88366 -11.79876 -11.67455 -11.53969 -11.15085 -10.77584 -10.57186 -10.39632 -9.60819 -8.25990 -8.08021 -6.21720 0.56609 0.62742 1.42200 1.43498 1.53116 2.42244 2.72572 3.03384 3.19312 3.68305 3.90395 4.09349 4.15214 4.24548 4.27887 4.31180 4.45354 4.52466 4.63866 4.68376 4.78286 4.80771 4.93017 4.98592 5.09540 5.15559 5.19491 5.32642 5.43745 5.53015 5.63178 5.69594 5.76057 5.88700 6.03100 6.08327 6.22537 6.39086 6.76596 6.88236 7.46241 8.96803 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032014 B = 0.007147 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.394709 B = 3916.984901 C = 4655.711858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.016 3.984 3 Si 0.952 3.048 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.069 3.931 10 H -0.001 1.001 11 C -0.110 4.110 12 C -0.110 4.110 13 C 0.084 3.916 14 N -0.530 5.530 15 C 0.125 3.875 16 C -0.180 4.180 17 C -0.087 4.087 18 C -0.172 4.172 19 C -0.076 4.076 20 C -0.181 4.181 21 C -0.064 4.064 22 C 0.108 3.892 23 H 0.052 0.948 24 H 0.260 0.740 25 H 0.028 0.972 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.043 0.957 31 H 0.135 0.865 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.065 0.935 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.228 -13.308 -0.071 14.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.183 4.183 3 Si 0.778 3.222 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.050 3.950 10 H 0.017 0.983 11 C -0.149 4.149 12 C -0.148 4.148 13 C -0.041 4.041 14 N -0.239 5.239 15 C 0.023 3.977 16 C -0.202 4.202 17 C -0.105 4.105 18 C -0.192 4.192 19 C -0.094 4.094 20 C -0.185 4.185 21 C -0.101 4.101 22 C 0.004 3.996 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.046 0.954 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.061 0.939 31 H 0.153 0.847 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.160 0.840 35 H 0.083 0.917 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.643 -13.073 0.118 13.873 hybrid contribution 0.334 1.292 -0.404 1.394 sum 4.976 -11.781 -0.286 12.792 Atomic orbital electron populations 1.70029 1.07203 1.27090 1.51267 1.25695 0.95584 1.02240 0.94768 0.85640 0.78811 0.79539 0.78190 1.20164 1.21159 1.19179 1.21401 0.93069 0.91525 1.50623 0.92572 1.18605 0.92040 0.90676 0.93666 0.98315 1.21586 0.99449 0.96135 0.97687 1.21697 0.97419 0.94318 1.01381 1.21688 0.95072 0.99650 0.87702 1.55193 1.29745 1.05473 1.33504 1.19447 0.90330 0.91813 0.96141 1.20879 1.03286 0.89742 1.06281 1.21126 0.93542 1.00638 0.95228 1.21228 1.01015 0.94144 1.02779 1.20933 0.97201 0.93896 0.97354 1.21073 0.98401 0.95343 1.03664 1.20924 0.99727 0.92071 0.97390 1.22844 0.92452 0.87778 0.96571 0.92983 0.93078 0.95351 0.91964 0.93297 0.90254 0.89025 0.93898 0.84709 0.83566 0.83781 0.84026 0.91693 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.80 11.38 21.45 0.24 -52.56 16 2 C 0.02 0.88 5.31 84.65 0.45 1.33 16 3 Si 0.95 43.27 29.54 68.60 2.03 45.30 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.53 -28.66 8.29 25.60 0.21 -28.45 16 8 H 0.06 2.98 7.75 -2.91 -0.02 2.95 16 9 C 0.07 3.49 1.84 -11.39 -0.02 3.47 16 10 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 11 C -0.11 -5.23 4.98 30.82 0.15 -5.07 16 12 C -0.11 -4.18 6.08 30.80 0.19 -3.99 16 13 C 0.08 2.87 5.96 87.00 0.52 3.39 16 14 N -0.53 -20.64 3.88 -670.30 -2.60 -23.25 16 15 C 0.13 4.45 6.34 39.43 0.25 4.70 16 16 C -0.18 -5.13 9.95 22.65 0.23 -4.91 16 17 C -0.09 -2.07 9.93 22.28 0.22 -1.85 16 18 C -0.17 -4.11 9.99 22.40 0.22 -3.88 16 19 C -0.08 -2.14 10.23 22.33 0.23 -1.91 16 20 C -0.18 -6.40 6.12 -19.15 -0.12 -6.52 16 21 C -0.06 -2.54 6.32 30.45 0.19 -2.35 16 22 C 0.11 4.66 2.39 44.90 0.11 4.76 16 23 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 25 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.06 3.33 6.19 -2.39 -0.01 3.32 16 27 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.08 2.55 8.14 -2.39 -0.02 2.54 16 29 H 0.09 2.61 7.78 -2.39 -0.02 2.59 16 30 H 0.04 1.42 8.12 -2.39 -0.02 1.40 16 31 H 0.14 3.30 7.79 -2.91 -0.02 3.28 16 32 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 35 H 0.06 2.81 8.02 -2.39 -0.02 2.79 16 36 H 0.08 2.92 8.14 -2.38 -0.02 2.90 16 Total: -1.00 -61.15 286.82 3.55 -57.61 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 1.05 Total: 14.18 kcal Atomic # 6 Polarization: -44.11 SS G_CDS: 2.83 Total: -41.28 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -2.36 Total: -75.81 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -61.15 3.55 -57.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966054.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.037 kcal (2) G-P(sol) polarization free energy of solvation -61.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds