Wall clock time and date at job start Mon Mar 30 2020 05:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99904 * 2 1 4 4 H 1.48491 * 109.47127 * 269.99867 * 3 2 1 5 5 H 1.48496 * 109.46971 * 30.00541 * 3 2 1 6 6 H 1.48501 * 109.46759 * 150.00093 * 3 2 1 7 7 C 1.37880 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00060 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99735 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.01836 * 58.74995 * 9 7 2 11 11 C 1.53865 * 109.95941 * 297.50177 * 9 7 2 12 12 C 1.52819 * 110.67320 * 183.09599 * 11 9 7 13 13 C 1.53777 * 110.78139 * 53.72893 * 12 11 9 14 14 N 1.44387 * 108.81848 * 304.91392 * 13 12 11 15 15 C 1.37858 * 121.74916 * 191.06440 * 14 13 12 16 16 C 1.39223 * 132.30388 * 25.13686 * 15 14 13 17 17 C 1.37871 * 120.43451 * 177.45856 * 16 15 14 18 18 C 1.38312 * 120.32599 * 0.68506 * 17 16 15 19 19 C 1.38328 * 119.80243 * 0.07843 * 18 17 16 20 20 C 1.37538 * 120.26480 * 359.93931 * 19 18 17 21 21 C 1.52361 * 131.76436 * 178.04731 * 20 19 18 22 22 C 1.48431 * 110.86341 * 62.98817 * 14 13 12 23 23 H 1.09001 * 111.87585 * 54.28344 * 22 14 13 24 24 H 0.96998 * 120.00276 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.23398 * 303.39919 * 11 9 7 26 26 H 1.08995 * 109.23489 * 62.82450 * 11 9 7 27 27 H 1.08997 * 109.21426 * 174.07158 * 12 11 9 28 28 H 1.09003 * 109.21333 * 293.39863 * 12 11 9 29 29 H 1.08998 * 109.78171 * 63.95944 * 13 12 11 30 30 H 1.09006 * 109.77512 * 184.76913 * 13 12 11 31 31 H 1.07999 * 119.78290 * 357.69131 * 16 15 14 32 32 H 1.08000 * 119.83704 * 180.44770 * 17 16 15 33 33 H 1.08002 * 120.10206 * 180.36514 * 18 17 16 34 34 H 1.08001 * 119.87379 * 179.91035 * 19 18 17 35 35 H 1.08999 * 111.05657 * 318.69094 * 21 20 19 36 36 H 1.09005 * 111.05394 * 82.62817 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6047 -2.5567 -0.8752 11 6 0.4096 -2.6197 1.2830 12 6 -0.3021 -3.9710 1.3362 13 6 0.7013 -5.1233 1.1625 14 7 1.4375 -4.9191 -0.0626 15 6 2.2456 -5.9007 -0.5955 16 6 2.2352 -7.2881 -0.4799 17 6 3.1477 -8.0536 -1.1744 18 6 4.0934 -7.4502 -1.9834 19 6 4.1243 -6.0717 -2.0945 20 6 3.2182 -5.3002 -1.4051 21 6 3.0400 -3.7904 -1.3042 22 6 2.2331 -3.6677 0.0011 23 1 2.8834 -3.6440 0.8756 24 1 -0.4850 0.8400 0.0004 25 1 1.0619 -2.5230 2.1509 26 1 -0.3332 -1.8223 1.3015 27 1 -0.8043 -4.0744 2.2981 28 1 -1.0435 -4.0176 0.5385 29 1 1.4019 -5.1314 1.9975 30 1 0.1681 -6.0731 1.1183 31 1 1.5052 -7.7680 0.1550 32 1 3.1263 -9.1295 -1.0832 33 1 4.8027 -8.0536 -2.5304 34 1 4.8633 -5.5992 -2.7247 35 1 4.0031 -3.2873 -1.2179 36 1 2.4743 -3.4053 -2.1526 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259966059.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:05 Heat of formation + Delta-G solvation = 28.783314 kcal Electronic energy + Delta-G solvation = -17577.737730 eV Core-core repulsion = 15026.043389 eV Total energy + Delta-G solvation = -2551.694341 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.51526 -37.30228 -33.95114 -33.19120 -31.49764 -29.83015 -28.39452 -26.61709 -24.99639 -23.14945 -21.02036 -20.71816 -20.44957 -18.93694 -16.86148 -16.15733 -15.24859 -15.14583 -14.68312 -14.02623 -13.77383 -13.61468 -13.09279 -12.77820 -12.55900 -12.28358 -12.03806 -11.70925 -11.56546 -11.15018 -10.98627 -10.78929 -10.67195 -10.35555 -10.23846 -9.95520 -9.86702 -9.50834 -9.02017 -8.80203 -8.43821 -8.37744 -6.97738 -6.04143 -4.09910 1.76813 1.82477 3.28481 3.35662 3.38159 4.00795 4.26208 4.44018 4.97361 5.25942 5.28673 5.33113 5.40281 5.58851 5.68108 5.74607 5.82660 5.88929 5.97217 6.00297 6.20251 6.31460 6.45540 6.52522 6.54626 6.68072 6.72313 6.81613 6.87887 6.94857 7.06211 7.20746 7.33435 7.52315 7.67859 7.94993 8.01975 8.07657 8.37469 8.93055 9.54971 11.03023 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.031977 B = 0.007095 C = 0.005980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.412288 B = 3945.382634 C = 4681.298814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.067 3.933 10 H 0.041 0.959 11 C -0.115 4.115 12 C -0.117 4.117 13 C 0.079 3.921 14 N -0.512 5.512 15 C 0.146 3.854 16 C -0.173 4.173 17 C -0.091 4.091 18 C -0.173 4.173 19 C -0.078 4.078 20 C -0.152 4.152 21 C -0.063 4.063 22 C 0.102 3.898 23 H 0.057 0.943 24 H 0.261 0.739 25 H 0.034 0.966 26 H 0.090 0.910 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.034 0.966 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.016 -11.084 -0.163 11.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.049 3.951 10 H 0.059 0.941 11 C -0.153 4.153 12 C -0.155 4.155 13 C -0.047 4.047 14 N -0.221 5.221 15 C 0.043 3.957 16 C -0.196 4.196 17 C -0.110 4.110 18 C -0.192 4.192 19 C -0.096 4.096 20 C -0.155 4.155 21 C -0.100 4.100 22 C -0.002 4.002 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.108 0.892 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.093 0.907 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.406 -10.836 -0.340 11.363 hybrid contribution 0.738 0.670 0.474 1.104 sum 4.144 -10.166 0.134 10.979 Atomic orbital electron populations 1.69899 1.05894 1.26536 1.50271 1.24931 0.94806 0.99000 0.94930 0.86620 0.79872 0.83531 0.78143 1.20646 1.21283 1.19928 1.21040 0.92887 0.90180 1.51147 0.92492 1.18776 0.91906 0.89679 0.94774 0.94106 1.21742 1.00197 0.94443 0.98891 1.21776 0.97537 0.95835 1.00352 1.21643 0.95826 0.99299 0.87935 1.56066 1.29468 1.04858 1.31724 1.19208 0.89887 0.91177 0.95452 1.20193 1.02876 0.91126 1.05386 1.20665 0.95005 0.98767 0.96524 1.20781 1.01228 0.94269 1.02961 1.20240 0.97791 0.93260 0.98335 1.21078 0.97036 0.96729 1.00673 1.21194 1.00375 0.89600 0.98859 1.23070 0.93373 0.87780 0.95952 0.92510 0.92949 0.94759 0.89185 0.92850 0.92074 0.94738 0.91823 0.87170 0.86667 0.86700 0.86719 0.90746 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.64 11.56 55.43 0.64 -23.99 16 2 C 0.07 1.74 5.32 -17.82 -0.09 1.65 16 3 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.51 -13.43 8.28 -34.44 -0.29 -13.72 16 8 H 0.06 1.46 7.76 -52.48 -0.41 1.06 16 9 C 0.07 1.62 1.85 -91.50 -0.17 1.45 16 10 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 11 C -0.11 -2.60 5.01 -26.37 -0.13 -2.73 16 12 C -0.12 -2.21 6.09 -26.42 -0.16 -2.37 16 13 C 0.08 1.40 5.93 -4.76 -0.03 1.37 16 14 N -0.51 -9.99 4.01 -163.62 -0.66 -10.64 16 15 C 0.15 2.66 6.35 -84.10 -0.53 2.13 16 16 C -0.17 -2.74 9.86 -39.35 -0.39 -3.13 16 17 C -0.09 -1.26 10.02 -39.69 -0.40 -1.66 16 18 C -0.17 -2.39 10.07 -39.52 -0.40 -2.79 16 19 C -0.08 -1.20 10.01 -39.80 -0.40 -1.59 16 20 C -0.15 -2.73 6.25 -103.37 -0.65 -3.38 16 21 C -0.06 -1.22 6.35 -26.57 -0.17 -1.39 16 22 C 0.10 2.14 2.30 -66.55 -0.15 1.98 16 23 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 24 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.09 2.28 6.39 -51.93 -0.33 1.95 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.03 0.60 8.12 -51.93 -0.42 0.18 16 30 H 0.06 0.99 7.99 -51.93 -0.41 0.58 16 31 H 0.11 1.56 7.92 -52.49 -0.42 1.15 16 32 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 34 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.09 1.79 8.05 -51.93 -0.42 1.37 16 LS Contribution 287.66 15.07 4.33 4.33 Total: -1.00 -27.40 287.66 -10.00 -37.41 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.35 Total: 1.40 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -3.95 Total: -24.17 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: -0.02 Total: -34.64 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.40 -10.00 -37.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966059.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.189 kcal (2) G-P(sol) polarization free energy of solvation -27.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds