Wall clock time and date at job start Mon Mar 30 2020 05:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99904 * 2 1 4 4 H 1.48491 * 109.47127 * 269.99867 * 3 2 1 5 5 H 1.48496 * 109.46971 * 30.00541 * 3 2 1 6 6 H 1.48501 * 109.46759 * 150.00093 * 3 2 1 7 7 C 1.37880 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00060 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99735 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.01836 * 58.74995 * 9 7 2 11 11 C 1.53865 * 109.95941 * 297.50177 * 9 7 2 12 12 C 1.52819 * 110.67320 * 183.09599 * 11 9 7 13 13 C 1.53777 * 110.78139 * 53.72893 * 12 11 9 14 14 N 1.44387 * 108.81848 * 304.91392 * 13 12 11 15 15 C 1.37858 * 121.74916 * 191.06440 * 14 13 12 16 16 C 1.39223 * 132.30388 * 25.13686 * 15 14 13 17 17 C 1.37871 * 120.43451 * 177.45856 * 16 15 14 18 18 C 1.38312 * 120.32599 * 0.68506 * 17 16 15 19 19 C 1.38328 * 119.80243 * 0.07843 * 18 17 16 20 20 C 1.37538 * 120.26480 * 359.93931 * 19 18 17 21 21 C 1.52361 * 131.76436 * 178.04731 * 20 19 18 22 22 C 1.48431 * 110.86341 * 62.98817 * 14 13 12 23 23 H 1.09001 * 111.87585 * 54.28344 * 22 14 13 24 24 H 0.96998 * 120.00276 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.23398 * 303.39919 * 11 9 7 26 26 H 1.08995 * 109.23489 * 62.82450 * 11 9 7 27 27 H 1.08997 * 109.21426 * 174.07158 * 12 11 9 28 28 H 1.09003 * 109.21333 * 293.39863 * 12 11 9 29 29 H 1.08998 * 109.78171 * 63.95944 * 13 12 11 30 30 H 1.09006 * 109.77512 * 184.76913 * 13 12 11 31 31 H 1.07999 * 119.78290 * 357.69131 * 16 15 14 32 32 H 1.08000 * 119.83704 * 180.44770 * 17 16 15 33 33 H 1.08002 * 120.10206 * 180.36514 * 18 17 16 34 34 H 1.08001 * 119.87379 * 179.91035 * 19 18 17 35 35 H 1.08999 * 111.05657 * 318.69094 * 21 20 19 36 36 H 1.09005 * 111.05394 * 82.62817 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6047 -2.5567 -0.8752 11 6 0.4096 -2.6197 1.2830 12 6 -0.3021 -3.9710 1.3362 13 6 0.7013 -5.1233 1.1625 14 7 1.4375 -4.9191 -0.0626 15 6 2.2456 -5.9007 -0.5955 16 6 2.2352 -7.2881 -0.4799 17 6 3.1477 -8.0536 -1.1744 18 6 4.0934 -7.4502 -1.9834 19 6 4.1243 -6.0717 -2.0945 20 6 3.2182 -5.3002 -1.4051 21 6 3.0400 -3.7904 -1.3042 22 6 2.2331 -3.6677 0.0011 23 1 2.8834 -3.6440 0.8756 24 1 -0.4850 0.8400 0.0004 25 1 1.0619 -2.5230 2.1509 26 1 -0.3332 -1.8223 1.3015 27 1 -0.8043 -4.0744 2.2981 28 1 -1.0435 -4.0176 0.5385 29 1 1.4019 -5.1314 1.9975 30 1 0.1681 -6.0731 1.1183 31 1 1.5052 -7.7680 0.1550 32 1 3.1263 -9.1295 -1.0832 33 1 4.8027 -8.0536 -2.5304 34 1 4.8633 -5.5992 -2.7247 35 1 4.0031 -3.2873 -1.2179 36 1 2.4743 -3.4053 -2.1526 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259966059.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:05 Heat of formation + Delta-G solvation = 15.282418 kcal Electronic energy + Delta-G solvation = -17578.323173 eV Core-core repulsion = 15026.043389 eV Total energy + Delta-G solvation = -2552.279784 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.92472 -38.68021 -35.66619 -34.73708 -33.19060 -31.29312 -29.75616 -28.20253 -26.77598 -24.69578 -22.51811 -22.07022 -21.91239 -20.60852 -18.62541 -17.65875 -16.72770 -16.58356 -16.38148 -15.51523 -15.29910 -14.89045 -14.74328 -14.32085 -14.07428 -13.70512 -13.53731 -13.30733 -13.06596 -12.83222 -12.66929 -12.57337 -12.21207 -11.91684 -11.78202 -11.60681 -11.52530 -11.14590 -10.77286 -10.58009 -10.40545 -9.64548 -8.33470 -8.09476 -6.22004 0.56144 0.61834 1.42348 1.43428 1.52965 2.41909 2.71521 3.01015 3.19267 3.65326 3.90330 4.06795 4.15228 4.22812 4.26040 4.31769 4.44539 4.52978 4.64192 4.68113 4.77727 4.80389 4.92932 4.98532 5.09530 5.14802 5.17962 5.30756 5.41370 5.53182 5.62479 5.68563 5.74874 5.85371 6.01652 6.04843 6.21977 6.38651 6.72588 6.88015 7.45860 8.96814 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.031977 B = 0.007095 C = 0.005980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.412288 B = 3945.382634 C = 4681.298814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.016 3.984 3 Si 0.952 3.048 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.069 3.931 10 H 0.000 1.000 11 C -0.109 4.109 12 C -0.109 4.109 13 C 0.082 3.918 14 N -0.526 5.526 15 C 0.116 3.884 16 C -0.175 4.175 17 C -0.086 4.086 18 C -0.163 4.163 19 C -0.083 4.083 20 C -0.176 4.176 21 C -0.060 4.060 22 C 0.107 3.893 23 H 0.049 0.951 24 H 0.260 0.740 25 H 0.029 0.971 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.038 0.962 30 H 0.091 0.909 31 H 0.126 0.874 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.133 0.867 35 H 0.077 0.923 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.417 -13.473 -0.180 14.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.182 4.182 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.050 3.950 10 H 0.018 0.982 11 C -0.147 4.147 12 C -0.147 4.147 13 C -0.044 4.044 14 N -0.236 5.236 15 C 0.015 3.985 16 C -0.197 4.197 17 C -0.104 4.104 18 C -0.183 4.183 19 C -0.101 4.101 20 C -0.179 4.179 21 C -0.097 4.097 22 C 0.002 3.998 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.109 0.891 31 H 0.144 0.856 32 H 0.171 0.829 33 H 0.168 0.832 34 H 0.150 0.850 35 H 0.096 0.904 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.820 -13.250 -0.364 14.104 hybrid contribution 0.345 1.308 0.429 1.419 sum 5.166 -11.942 0.064 13.011 Atomic orbital electron populations 1.70040 1.07227 1.27157 1.51191 1.25689 0.95575 1.02238 0.94746 0.85640 0.78807 0.79547 0.78182 1.20260 1.21050 1.19166 1.21375 0.93039 0.91469 1.50713 0.92595 1.18600 0.92123 0.90587 0.93647 0.98155 1.21571 0.99290 0.95953 0.97896 1.21673 0.97422 0.94201 1.01429 1.21659 0.95529 0.99609 0.87605 1.56033 1.30054 1.04712 1.32795 1.19428 0.90576 0.92135 0.96372 1.20518 1.03566 0.90016 1.05605 1.21145 0.93660 1.00578 0.95025 1.21244 1.01251 0.93672 1.02083 1.20561 0.97393 0.94211 0.97937 1.21077 0.98772 0.95501 1.02555 1.21032 0.99847 0.91622 0.97236 1.22731 0.92848 0.87805 0.96388 0.93325 0.93052 0.95209 0.92374 0.90123 0.93211 0.94327 0.89104 0.85556 0.82938 0.83174 0.84961 0.90416 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.92 11.56 21.45 0.25 -52.67 16 2 C 0.02 0.90 5.32 84.66 0.45 1.35 16 3 Si 0.95 43.30 29.54 68.60 2.03 45.32 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.53 -28.67 8.28 25.60 0.21 -28.46 16 8 H 0.06 2.97 7.76 -2.91 -0.02 2.95 16 9 C 0.07 3.51 1.85 -11.37 -0.02 3.49 16 10 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 11 C -0.11 -5.15 5.01 30.83 0.15 -4.99 16 12 C -0.11 -4.15 6.09 30.80 0.19 -3.96 16 13 C 0.08 2.81 5.93 87.04 0.52 3.33 16 14 N -0.53 -20.57 4.01 -671.57 -2.69 -23.26 16 15 C 0.12 4.13 6.35 38.88 0.25 4.37 16 16 C -0.17 -5.00 9.86 22.42 0.22 -4.78 16 17 C -0.09 -1.99 10.02 22.20 0.22 -1.77 16 18 C -0.16 -3.81 10.07 22.31 0.22 -3.58 16 19 C -0.08 -2.35 10.01 22.13 0.22 -2.13 16 20 C -0.18 -6.21 6.25 -19.05 -0.12 -6.33 16 21 C -0.06 -2.40 6.35 30.70 0.20 -2.20 16 22 C 0.11 4.63 2.30 44.82 0.10 4.74 16 23 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 25 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 3.10 6.39 -2.39 -0.02 3.08 16 27 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.04 1.29 8.12 -2.39 -0.02 1.27 16 30 H 0.09 2.63 7.99 -2.38 -0.02 2.61 16 31 H 0.13 3.13 7.92 -2.91 -0.02 3.11 16 32 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 33 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 35 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 36 H 0.07 2.86 8.05 -2.38 -0.02 2.84 16 Total: -1.00 -61.35 287.66 3.44 -57.91 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 1.04 Total: 13.62 kcal Atomic # 6 Polarization: -43.74 SS G_CDS: 2.82 Total: -40.92 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -2.45 Total: -75.93 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -61.35 3.44 -57.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966059.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.191 kcal (2) G-P(sol) polarization free energy of solvation -61.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds