Wall clock time and date at job start Mon Mar 30 2020 05:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00226 * 2 1 4 4 H 1.48497 * 109.47403 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47230 * 300.00494 * 3 2 1 6 6 H 1.48500 * 109.46969 * 60.00465 * 3 2 1 7 7 C 1.37885 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99582 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00072 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.94405 * 301.20776 * 9 7 2 11 11 C 1.53872 * 109.96474 * 62.51150 * 9 7 2 12 12 C 1.52806 * 110.65367 * 61.79403 * 11 9 7 13 13 C 1.53773 * 110.81867 * 53.73362 * 12 11 9 14 14 N 1.44743 * 107.85943 * 304.42210 * 13 12 11 15 15 C 1.37855 * 120.90260 * 191.89487 * 14 13 12 16 16 C 1.39219 * 132.28836 * 26.11823 * 15 14 13 17 17 C 1.37871 * 120.44886 * 178.86880 * 16 15 14 18 18 C 1.38305 * 120.32178 * 359.78018 * 17 16 15 19 19 C 1.38336 * 119.80170 * 0.66957 * 18 17 16 20 20 C 1.37515 * 120.25447 * 359.94381 * 19 18 17 21 21 C 1.52383 * 131.76452 * 178.26396 * 20 19 18 22 22 C 1.48372 * 110.70239 * 64.61866 * 14 13 12 23 23 H 1.08996 * 111.84819 * 51.91375 * 22 14 13 24 24 H 0.97001 * 119.99647 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.24492 * 182.09976 * 11 9 7 26 26 H 1.09008 * 109.23805 * 301.49636 * 11 9 7 27 27 H 1.09000 * 109.20700 * 174.07826 * 12 11 9 28 28 H 1.08993 * 109.20943 * 293.43916 * 12 11 9 29 29 H 1.09000 * 109.78592 * 184.82500 * 13 12 11 30 30 H 1.09003 * 109.78113 * 64.01069 * 13 12 11 31 31 H 1.07992 * 119.78029 * 358.77926 * 16 15 14 32 32 H 1.07999 * 119.84032 * 179.97438 * 17 16 15 33 33 H 1.08005 * 120.09725 * 180.63785 * 18 17 16 34 34 H 1.07998 * 119.86982 * 179.97438 * 19 18 17 35 35 H 1.09001 * 111.07289 * 83.03664 * 21 20 19 36 36 H 1.08995 * 111.07542 * 319.00312 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6057 -2.5559 0.8761 11 6 0.4097 -2.6201 -1.2832 12 6 1.3082 -2.6178 -2.5193 13 6 2.3950 -3.6999 -2.4069 14 7 3.1200 -3.4745 -1.1746 15 6 4.3037 -4.1333 -0.9190 16 6 5.2737 -4.6761 -1.7574 17 6 6.3981 -5.2742 -1.2294 18 6 6.5773 -5.3377 0.1405 19 6 5.6165 -4.8105 0.9847 20 6 4.4860 -4.2233 0.4668 21 6 3.2668 -3.6021 1.1374 22 6 2.2328 -3.6677 -0.0012 23 1 1.7143 -4.6257 -0.0381 24 1 -0.4850 0.8401 0.0004 25 1 -0.1584 -3.5497 -1.2539 26 1 -0.2814 -1.7791 -1.3400 27 1 0.7012 -2.8097 -3.4041 28 1 1.7836 -1.6418 -2.6153 29 1 3.0765 -3.6277 -3.2545 30 1 1.9324 -4.6867 -2.3876 31 1 5.1438 -4.6296 -2.8284 32 1 7.1441 -5.6924 -1.8889 33 1 7.4644 -5.7979 0.5499 34 1 5.7551 -4.8598 2.0546 35 1 3.4632 -2.5704 1.4294 36 1 2.9454 -4.1954 1.9934 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259966062.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:08 Heat of formation + Delta-G solvation = 36.075184 kcal Electronic energy + Delta-G solvation = -17897.583753 eV Core-core repulsion = 15346.205611 eV Total energy + Delta-G solvation = -2551.378142 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.49401 -37.28184 -33.86133 -32.97457 -31.35507 -29.73610 -28.27777 -26.46183 -24.91040 -23.34447 -20.92285 -20.69856 -20.46120 -18.89694 -16.56194 -15.95970 -15.22924 -14.97005 -14.76509 -13.91690 -13.66537 -13.53925 -13.02354 -12.65244 -12.44572 -12.23882 -11.93154 -11.64334 -11.41402 -11.27707 -10.90707 -10.81616 -10.51229 -10.36702 -10.08481 -9.86950 -9.65625 -9.44637 -8.94955 -8.73981 -8.35188 -8.29083 -6.81553 -5.95032 -3.94927 1.85329 1.91740 3.32695 3.41561 3.47641 4.10621 4.38584 4.49849 5.04986 5.35118 5.37958 5.40464 5.48856 5.63711 5.76718 5.82825 5.90032 5.96528 6.02429 6.06506 6.27984 6.39327 6.41651 6.54380 6.64583 6.73532 6.80821 6.90260 6.93787 7.04888 7.23588 7.28710 7.35792 7.57295 7.81296 7.83224 8.10211 8.18467 8.50804 9.08258 9.67216 11.12985 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026535 B = 0.008372 C = 0.007541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.965916 B = 3343.731842 C = 3711.922358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.885 3.115 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.479 4.479 8 H 0.064 0.936 9 C 0.057 3.943 10 H 0.038 0.962 11 C -0.113 4.113 12 C -0.102 4.102 13 C 0.078 3.922 14 N -0.481 5.481 15 C 0.146 3.854 16 C -0.176 4.176 17 C -0.090 4.090 18 C -0.177 4.177 19 C -0.078 4.078 20 C -0.153 4.153 21 C -0.070 4.070 22 C 0.096 3.904 23 H 0.047 0.953 24 H 0.257 0.743 25 H 0.014 0.986 26 H 0.092 0.908 27 H 0.043 0.957 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.030 0.970 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.557 -9.051 -1.675 11.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.143 4.143 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.517 4.517 8 H 0.083 0.917 9 C 0.039 3.961 10 H 0.056 0.944 11 C -0.151 4.151 12 C -0.140 4.140 13 C -0.048 4.048 14 N -0.189 5.189 15 C 0.043 3.957 16 C -0.199 4.199 17 C -0.109 4.109 18 C -0.197 4.197 19 C -0.097 4.097 20 C -0.156 4.156 21 C -0.107 4.107 22 C -0.008 4.008 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.033 0.967 26 H 0.110 0.890 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.372 -8.418 -1.806 10.711 hybrid contribution 0.396 0.417 -0.255 0.629 sum 6.767 -8.002 -2.061 10.680 Atomic orbital electron populations 1.69893 1.05799 1.26081 1.51951 1.24929 0.94731 0.98820 0.95803 0.86632 0.80368 0.84288 0.77329 1.19826 1.21357 1.21323 1.21052 0.93194 0.89285 1.48175 0.91746 1.18849 0.91742 0.91373 0.94150 0.94423 1.21637 0.98415 0.99752 0.95273 1.21526 0.95697 0.98839 0.97900 1.21742 0.95544 0.97791 0.89718 1.56183 1.04191 1.53212 1.05281 1.19319 0.92622 0.89654 0.94144 1.20171 0.96222 1.04972 0.98489 1.20641 0.96402 0.98728 0.95111 1.20738 0.99892 1.05603 0.93425 1.20201 0.92790 0.97561 0.99146 1.21011 0.98080 1.02662 0.93860 1.21338 0.90704 1.01977 0.96677 1.23038 0.93252 0.98970 0.85582 0.93534 0.93313 0.96734 0.88980 0.93849 0.90651 0.91873 0.95137 0.87240 0.86813 0.86868 0.86915 0.87705 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.86 11.53 55.43 0.64 -24.22 16 2 C 0.06 1.53 5.32 -17.82 -0.09 1.43 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.48 -12.40 6.25 -34.44 -0.22 -12.61 16 8 H 0.06 1.74 6.59 -52.48 -0.35 1.39 16 9 C 0.06 1.35 2.40 -91.51 -0.22 1.13 16 10 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 11 C -0.11 -2.52 5.27 -26.38 -0.14 -2.66 16 12 C -0.10 -2.05 5.75 -26.43 -0.15 -2.20 16 13 C 0.08 1.44 5.93 -4.58 -0.03 1.41 16 14 N -0.48 -9.74 3.19 -163.42 -0.52 -10.26 16 15 C 0.15 2.79 6.33 -84.11 -0.53 2.26 16 16 C -0.18 -2.93 9.81 -39.35 -0.39 -3.32 16 17 C -0.09 -1.32 10.02 -39.69 -0.40 -1.72 16 18 C -0.18 -2.56 10.07 -39.52 -0.40 -2.96 16 19 C -0.08 -1.25 10.01 -39.81 -0.40 -1.64 16 20 C -0.15 -2.81 6.24 -103.36 -0.64 -3.46 16 21 C -0.07 -1.34 6.43 -26.55 -0.17 -1.51 16 22 C 0.10 1.96 2.76 -66.60 -0.18 1.78 16 23 H 0.05 0.91 8.11 -51.93 -0.42 0.49 16 24 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 25 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.09 2.33 6.28 -51.92 -0.33 2.00 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.70 7.61 -51.93 -0.40 1.31 16 29 H 0.06 1.06 7.85 -51.93 -0.41 0.66 16 30 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 31 H 0.11 1.66 7.82 -52.49 -0.41 1.25 16 32 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 33 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.10 2.21 6.44 -51.93 -0.33 1.88 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 282.00 15.07 4.25 4.25 Total: -1.00 -27.51 282.00 -9.77 -37.28 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -5.16 Total: 0.73 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -3.96 Total: -24.07 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.12 Total: -34.48 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.51 -9.77 -37.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966062.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.358 kcal (2) G-P(sol) polarization free energy of solvation -27.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds