Wall clock time and date at job start Mon Mar 30 2020 05:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00226 * 2 1 4 4 H 1.48497 * 109.47403 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47230 * 300.00494 * 3 2 1 6 6 H 1.48500 * 109.46969 * 60.00465 * 3 2 1 7 7 C 1.37885 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99582 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00072 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.94405 * 301.20776 * 9 7 2 11 11 C 1.53872 * 109.96474 * 62.51150 * 9 7 2 12 12 C 1.52806 * 110.65367 * 61.79403 * 11 9 7 13 13 C 1.53773 * 110.81867 * 53.73362 * 12 11 9 14 14 N 1.44743 * 107.85943 * 304.42210 * 13 12 11 15 15 C 1.37855 * 120.90260 * 191.89487 * 14 13 12 16 16 C 1.39219 * 132.28836 * 26.11823 * 15 14 13 17 17 C 1.37871 * 120.44886 * 178.86880 * 16 15 14 18 18 C 1.38305 * 120.32178 * 359.78018 * 17 16 15 19 19 C 1.38336 * 119.80170 * 0.66957 * 18 17 16 20 20 C 1.37515 * 120.25447 * 359.94381 * 19 18 17 21 21 C 1.52383 * 131.76452 * 178.26396 * 20 19 18 22 22 C 1.48372 * 110.70239 * 64.61866 * 14 13 12 23 23 H 1.08996 * 111.84819 * 51.91375 * 22 14 13 24 24 H 0.97001 * 119.99647 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.24492 * 182.09976 * 11 9 7 26 26 H 1.09008 * 109.23805 * 301.49636 * 11 9 7 27 27 H 1.09000 * 109.20700 * 174.07826 * 12 11 9 28 28 H 1.08993 * 109.20943 * 293.43916 * 12 11 9 29 29 H 1.09000 * 109.78592 * 184.82500 * 13 12 11 30 30 H 1.09003 * 109.78113 * 64.01069 * 13 12 11 31 31 H 1.07992 * 119.78029 * 358.77926 * 16 15 14 32 32 H 1.07999 * 119.84032 * 179.97438 * 17 16 15 33 33 H 1.08005 * 120.09725 * 180.63785 * 18 17 16 34 34 H 1.07998 * 119.86982 * 179.97438 * 19 18 17 35 35 H 1.09001 * 111.07289 * 83.03664 * 21 20 19 36 36 H 1.08995 * 111.07542 * 319.00312 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6057 -2.5559 0.8761 11 6 0.4097 -2.6201 -1.2832 12 6 1.3082 -2.6178 -2.5193 13 6 2.3950 -3.6999 -2.4069 14 7 3.1200 -3.4745 -1.1746 15 6 4.3037 -4.1333 -0.9190 16 6 5.2737 -4.6761 -1.7574 17 6 6.3981 -5.2742 -1.2294 18 6 6.5773 -5.3377 0.1405 19 6 5.6165 -4.8105 0.9847 20 6 4.4860 -4.2233 0.4668 21 6 3.2668 -3.6021 1.1374 22 6 2.2328 -3.6677 -0.0012 23 1 1.7143 -4.6257 -0.0381 24 1 -0.4850 0.8401 0.0004 25 1 -0.1584 -3.5497 -1.2539 26 1 -0.2814 -1.7791 -1.3400 27 1 0.7012 -2.8097 -3.4041 28 1 1.7836 -1.6418 -2.6153 29 1 3.0765 -3.6277 -3.2545 30 1 1.9324 -4.6867 -2.3876 31 1 5.1438 -4.6296 -2.8284 32 1 7.1441 -5.6924 -1.8889 33 1 7.4644 -5.7979 0.5499 34 1 5.7551 -4.8598 2.0546 35 1 3.4632 -2.5704 1.4294 36 1 2.9454 -4.1954 1.9934 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259966062.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:07 Heat of formation + Delta-G solvation = 22.951058 kcal Electronic energy + Delta-G solvation = -17898.152858 eV Core-core repulsion = 15346.205611 eV Total energy + Delta-G solvation = -2551.947246 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.92542 -38.68568 -35.53758 -34.55090 -33.08448 -31.19162 -29.66684 -28.03586 -26.78881 -24.85982 -22.45478 -22.04157 -21.88307 -20.65009 -18.09370 -17.63311 -16.68887 -16.64037 -16.34733 -15.47900 -15.20835 -14.89127 -14.71419 -14.05003 -13.96006 -13.67540 -13.65162 -13.23830 -12.95348 -12.91039 -12.72623 -12.44567 -12.16000 -11.98401 -11.60707 -11.54493 -11.34651 -11.11506 -10.65516 -10.52809 -10.32698 -9.59675 -8.20366 -8.01458 -6.05340 0.61241 0.66997 1.37779 1.42036 1.52080 2.47692 2.77056 3.06126 3.29982 3.70701 3.96393 4.12468 4.20602 4.28822 4.32014 4.35558 4.51882 4.59451 4.67433 4.70033 4.80238 4.81246 5.00308 5.02595 5.11071 5.18091 5.27629 5.44548 5.54133 5.61816 5.67980 5.73170 5.79231 5.88241 6.02459 6.12935 6.31994 6.54151 6.80382 7.00920 7.58053 9.05334 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026535 B = 0.008372 C = 0.007541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.965916 B = 3343.731842 C = 3711.922358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.937 3.063 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.471 4.471 8 H 0.050 0.950 9 C 0.054 3.946 10 H 0.009 0.991 11 C -0.109 4.109 12 C -0.095 4.095 13 C 0.082 3.918 14 N -0.501 5.501 15 C 0.117 3.883 16 C -0.181 4.181 17 C -0.087 4.087 18 C -0.169 4.169 19 C -0.083 4.083 20 C -0.175 4.175 21 C -0.066 4.066 22 C 0.100 3.900 23 H 0.055 0.945 24 H 0.256 0.744 25 H 0.030 0.970 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.122 0.878 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.133 0.867 35 H 0.076 0.924 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.850 -10.730 -2.311 14.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.185 4.185 3 Si 0.765 3.235 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.509 4.509 8 H 0.068 0.932 9 C 0.035 3.965 10 H 0.027 0.973 11 C -0.147 4.147 12 C -0.133 4.133 13 C -0.044 4.044 14 N -0.210 5.210 15 C 0.014 3.986 16 C -0.204 4.204 17 C -0.105 4.105 18 C -0.188 4.188 19 C -0.101 4.101 20 C -0.179 4.179 21 C -0.104 4.104 22 C -0.005 4.005 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.048 0.952 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.140 0.860 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.151 0.849 35 H 0.094 0.906 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.687 -10.106 -2.441 13.548 hybrid contribution -0.230 0.854 -0.033 0.885 sum 8.457 -9.252 -2.474 12.777 Atomic orbital electron populations 1.70007 1.06727 1.26411 1.53268 1.25517 0.95390 1.01384 0.96223 0.85814 0.79046 0.81392 0.77214 1.20095 1.21257 1.21024 1.21131 0.92495 0.90469 1.46825 0.93167 1.18750 0.92163 0.91974 0.93570 0.97345 1.21511 0.98243 0.99050 0.95917 1.21421 0.96078 0.98126 0.97675 1.21722 0.95230 0.97466 0.89966 1.56155 1.04683 1.54933 1.05256 1.19541 0.92702 0.91346 0.94968 1.20474 0.96246 1.04615 0.99042 1.21093 0.96128 0.97371 0.95894 1.21197 1.00230 1.04036 0.93335 1.20541 0.92149 0.96774 1.00669 1.21072 0.98819 1.04251 0.93749 1.21184 0.91429 1.00772 0.96985 1.22809 0.93063 0.97598 0.87036 0.92726 0.93515 0.95175 0.92250 0.91288 0.93724 0.90070 0.93778 0.86036 0.83309 0.83419 0.84944 0.90602 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.85 11.53 21.45 0.25 -52.60 16 2 C 0.01 0.65 5.32 84.66 0.45 1.10 16 3 Si 0.94 44.82 29.54 68.60 2.03 46.84 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 7 C -0.47 -25.20 6.25 25.60 0.16 -25.04 16 8 H 0.05 2.80 6.59 -2.91 -0.02 2.78 16 9 C 0.05 2.63 2.40 -11.37 -0.03 2.60 16 10 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 11 C -0.11 -4.98 5.27 30.82 0.16 -4.82 16 12 C -0.10 -3.82 5.75 30.79 0.18 -3.64 16 13 C 0.08 2.92 5.93 86.97 0.52 3.44 16 14 N -0.50 -20.07 3.19 -670.94 -2.14 -22.21 16 15 C 0.12 4.28 6.33 38.88 0.25 4.53 16 16 C -0.18 -5.53 9.81 22.42 0.22 -5.31 16 17 C -0.09 -2.16 10.02 22.20 0.22 -1.94 16 18 C -0.17 -4.15 10.07 22.31 0.22 -3.92 16 19 C -0.08 -2.41 10.01 22.12 0.22 -2.19 16 20 C -0.18 -6.25 6.24 -19.05 -0.12 -6.37 16 21 C -0.07 -2.57 6.43 30.71 0.20 -2.37 16 22 C 0.10 4.12 2.76 44.83 0.12 4.24 16 23 H 0.05 2.13 8.11 -2.39 -0.02 2.12 16 24 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 25 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.06 3.10 6.28 -2.38 -0.01 3.09 16 27 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.04 2.04 7.61 -2.39 -0.02 2.03 16 29 H 0.08 2.57 7.85 -2.39 -0.02 2.55 16 30 H 0.04 1.45 8.10 -2.39 -0.02 1.43 16 31 H 0.12 3.31 7.82 -2.91 -0.02 3.29 16 32 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 33 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 34 H 0.13 3.22 8.06 -2.91 -0.02 3.20 16 35 H 0.08 3.32 6.44 -2.39 -0.02 3.31 16 36 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -60.45 282.00 3.96 -56.49 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 1.05 Total: 11.17 kcal Atomic # 6 Polarization: -42.46 SS G_CDS: 2.77 Total: -39.69 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -1.89 Total: -74.81 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -60.45 3.96 -56.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966062.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.441 kcal (2) G-P(sol) polarization free energy of solvation -60.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds