Wall clock time and date at job start Mon Mar 30 2020 05:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99932 * 2 1 4 4 H 1.48502 * 109.47387 * 240.00068 * 3 2 1 5 5 H 1.48501 * 109.47317 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47150 * 120.00303 * 3 2 1 7 7 C 1.37876 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99913 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00072 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.01363 * 61.25094 * 9 7 2 11 11 C 1.53862 * 109.96237 * 300.00710 * 9 7 2 12 12 C 1.52815 * 110.66718 * 298.15359 * 11 9 7 13 13 C 1.53772 * 110.78613 * 306.27982 * 12 11 9 14 14 N 1.44801 * 107.84524 * 55.71348 * 13 12 11 15 15 C 1.37901 * 120.69017 * 168.67957 * 14 13 12 16 16 C 1.39205 * 132.32577 * 334.17270 * 15 14 13 17 17 C 1.37885 * 120.42394 * 182.28193 * 16 15 14 18 18 C 1.38306 * 120.30998 * 0.14612 * 17 16 15 19 19 C 1.38338 * 119.82744 * 359.28673 * 18 17 16 20 20 C 1.37544 * 120.24336 * 0.19252 * 19 18 17 21 21 C 1.52384 * 131.73378 * 183.64026 * 20 19 18 22 22 C 1.48471 * 110.57074 * 295.20508 * 14 13 12 23 23 H 1.09001 * 111.88133 * 308.14538 * 22 14 13 24 24 H 0.96999 * 119.99418 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.23900 * 177.84752 * 11 9 7 26 26 H 1.08998 * 109.23727 * 58.45431 * 11 9 7 27 27 H 1.09000 * 109.21278 * 185.95088 * 12 11 9 28 28 H 1.08996 * 109.22176 * 66.61846 * 12 11 9 29 29 H 1.09002 * 109.78569 * 296.12643 * 13 12 11 30 30 H 1.08999 * 109.83331 * 175.32309 * 13 12 11 31 31 H 1.08002 * 119.78653 * 2.26511 * 16 15 14 32 32 H 1.07991 * 119.84436 * 180.16261 * 17 16 15 33 33 H 1.08001 * 120.08603 * 179.30728 * 18 17 16 34 34 H 1.08002 * 119.87542 * 179.90952 * 19 18 17 35 35 H 1.09001 * 111.17946 * 40.88693 * 21 20 19 36 36 H 1.09006 * 110.84367 * 276.98815 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6375 -2.5757 -0.8983 11 6 0.3625 -2.5927 1.2521 12 6 1.2141 -2.5648 2.5207 13 6 2.3030 -3.6494 2.4710 14 7 3.0756 -3.4474 1.2631 15 6 4.2615 -4.1229 1.0649 16 6 5.1890 -4.6675 1.9486 17 6 6.3386 -5.2634 1.4747 18 6 6.5840 -5.3236 0.1149 19 6 5.6646 -4.7965 -0.7742 20 6 4.5102 -4.2099 -0.3106 21 6 3.3074 -3.6227 -1.0391 22 6 2.2320 -3.6671 0.0613 23 1 1.7126 -4.6247 0.0991 24 1 -0.4849 0.8401 0.0004 25 1 -0.2052 -3.5226 1.2211 26 1 -0.3293 -1.7505 1.2654 27 1 0.5744 -2.7382 3.3860 28 1 1.6860 -1.5868 2.6146 29 1 1.8403 -4.6362 2.4523 30 1 2.9516 -3.5625 3.3426 31 1 5.0070 -4.6228 3.0123 32 1 7.0505 -5.6852 2.1685 33 1 7.4910 -5.7812 -0.2518 34 1 5.8562 -4.8418 -1.8361 35 1 3.0222 -4.2410 -1.8902 36 1 3.5056 -2.5973 -1.3513 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259966065.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:10 Heat of formation + Delta-G solvation = 36.840755 kcal Electronic energy + Delta-G solvation = -17905.431482 eV Core-core repulsion = 15354.086538 eV Total energy + Delta-G solvation = -2551.344944 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.49059 -37.27853 -33.86969 -32.96632 -31.33670 -29.73429 -28.26794 -26.45261 -24.91364 -23.33695 -20.91958 -20.68892 -20.45522 -18.88640 -16.55003 -15.95787 -15.23333 -14.96170 -14.77161 -13.90726 -13.67322 -13.53906 -13.02207 -12.64403 -12.43309 -12.24014 -11.92049 -11.62731 -11.41328 -11.26535 -10.86497 -10.80728 -10.57379 -10.36920 -10.06892 -9.85038 -9.65449 -9.42564 -8.95464 -8.75085 -8.34732 -8.27590 -6.82851 -5.93733 -3.94556 1.85173 1.91503 3.36222 3.40424 3.45053 4.11738 4.38438 4.49916 5.05127 5.35073 5.37970 5.40526 5.49305 5.63933 5.76969 5.83063 5.90335 5.96408 6.03201 6.07383 6.28485 6.39217 6.42170 6.54545 6.66209 6.73922 6.81121 6.90432 6.93720 7.04562 7.23710 7.30151 7.37100 7.57907 7.80803 7.85139 8.12783 8.18171 8.51046 9.07262 9.67397 11.13226 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026640 B = 0.008384 C = 0.007552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.797132 B = 3338.708746 C = 3706.799457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.479 4.479 8 H 0.063 0.937 9 C 0.058 3.942 10 H 0.036 0.964 11 C -0.115 4.115 12 C -0.101 4.101 13 C 0.076 3.924 14 N -0.477 5.477 15 C 0.143 3.857 16 C -0.175 4.175 17 C -0.091 4.091 18 C -0.176 4.176 19 C -0.079 4.079 20 C -0.150 4.150 21 C -0.070 4.070 22 C 0.094 3.906 23 H 0.047 0.953 24 H 0.258 0.742 25 H 0.013 0.987 26 H 0.097 0.903 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.030 0.970 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.066 0.934 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.434 -8.965 1.924 11.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.142 4.142 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.518 4.518 8 H 0.081 0.919 9 C 0.040 3.960 10 H 0.054 0.946 11 C -0.153 4.153 12 C -0.139 4.139 13 C -0.050 4.050 14 N -0.184 5.184 15 C 0.039 3.961 16 C -0.198 4.198 17 C -0.109 4.109 18 C -0.196 4.196 19 C -0.098 4.098 20 C -0.154 4.154 21 C -0.108 4.108 22 C -0.010 4.010 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.032 0.968 26 H 0.115 0.885 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.084 0.916 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.241 -8.319 2.041 10.598 hybrid contribution 0.420 0.389 0.272 0.634 sum 6.661 -7.930 2.314 10.612 Atomic orbital electron populations 1.69853 1.05782 1.26261 1.51853 1.24916 0.94739 0.98789 0.95783 0.86735 0.79560 0.83566 0.78579 1.20455 1.21622 1.20502 1.20968 0.93092 0.89337 1.48377 0.91893 1.18837 0.91559 0.91344 0.94275 0.94607 1.21665 0.98801 0.99982 0.94841 1.21514 0.95584 0.98812 0.97961 1.21777 0.95075 0.97913 0.90264 1.56593 1.04270 1.52216 1.05358 1.19374 0.92776 0.89716 0.94225 1.20183 0.96322 1.04951 0.98308 1.20645 0.96127 0.98778 0.95398 1.20740 1.00035 1.05546 0.93247 1.20212 0.92984 0.97472 0.99115 1.20992 0.97748 1.02599 0.94012 1.21330 0.90679 1.02182 0.96570 1.23069 0.93692 0.98897 0.85365 0.93513 0.93198 0.96841 0.88503 0.93896 0.90651 0.95160 0.91896 0.87237 0.86812 0.86868 0.86905 0.91578 0.87750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.80 11.34 55.43 0.63 -24.17 16 2 C 0.06 1.54 5.31 -17.82 -0.09 1.44 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.48 -12.43 6.30 -34.44 -0.22 -12.64 16 8 H 0.06 1.69 6.54 -52.49 -0.34 1.35 16 9 C 0.06 1.38 2.44 -91.50 -0.22 1.15 16 10 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 11 C -0.11 -2.58 5.24 -26.38 -0.14 -2.72 16 12 C -0.10 -2.05 5.75 -26.42 -0.15 -2.20 16 13 C 0.08 1.41 5.90 -4.55 -0.03 1.38 16 14 N -0.48 -9.69 3.26 -163.29 -0.53 -10.22 16 15 C 0.14 2.72 6.30 -84.10 -0.53 2.19 16 16 C -0.18 -2.92 9.80 -39.35 -0.39 -3.31 16 17 C -0.09 -1.33 10.02 -39.69 -0.40 -1.73 16 18 C -0.18 -2.55 10.06 -39.52 -0.40 -2.95 16 19 C -0.08 -1.26 10.01 -39.80 -0.40 -1.66 16 20 C -0.15 -2.77 6.26 -103.36 -0.65 -3.41 16 21 C -0.07 -1.35 6.41 -26.56 -0.17 -1.52 16 22 C 0.09 1.93 2.76 -66.54 -0.18 1.74 16 23 H 0.05 0.92 8.11 -51.93 -0.42 0.50 16 24 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.10 2.46 6.08 -51.93 -0.32 2.14 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.72 7.62 -51.93 -0.40 1.33 16 29 H 0.03 0.53 8.09 -51.93 -0.42 0.11 16 30 H 0.06 1.07 7.86 -51.93 -0.41 0.66 16 31 H 0.11 1.67 7.82 -52.49 -0.41 1.26 16 32 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 33 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.10 2.20 6.38 -51.93 -0.33 1.87 16 LS Contribution 281.59 15.07 4.24 4.24 Total: -1.00 -27.39 281.59 -9.78 -37.18 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.14 Total: 0.88 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: -3.96 Total: -24.22 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.10 Total: -34.39 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -27.39 -9.78 -37.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966065.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.017 kcal (2) G-P(sol) polarization free energy of solvation -27.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds