Wall clock time and date at job start Mon Mar 30 2020 05:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99932 * 2 1 4 4 H 1.48502 * 109.47387 * 240.00068 * 3 2 1 5 5 H 1.48501 * 109.47317 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47150 * 120.00303 * 3 2 1 7 7 C 1.37876 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99913 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00072 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.01363 * 61.25094 * 9 7 2 11 11 C 1.53862 * 109.96237 * 300.00710 * 9 7 2 12 12 C 1.52815 * 110.66718 * 298.15359 * 11 9 7 13 13 C 1.53772 * 110.78613 * 306.27982 * 12 11 9 14 14 N 1.44801 * 107.84524 * 55.71348 * 13 12 11 15 15 C 1.37901 * 120.69017 * 168.67957 * 14 13 12 16 16 C 1.39205 * 132.32577 * 334.17270 * 15 14 13 17 17 C 1.37885 * 120.42394 * 182.28193 * 16 15 14 18 18 C 1.38306 * 120.30998 * 0.14612 * 17 16 15 19 19 C 1.38338 * 119.82744 * 359.28673 * 18 17 16 20 20 C 1.37544 * 120.24336 * 0.19252 * 19 18 17 21 21 C 1.52384 * 131.73378 * 183.64026 * 20 19 18 22 22 C 1.48471 * 110.57074 * 295.20508 * 14 13 12 23 23 H 1.09001 * 111.88133 * 308.14538 * 22 14 13 24 24 H 0.96999 * 119.99418 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.23900 * 177.84752 * 11 9 7 26 26 H 1.08998 * 109.23727 * 58.45431 * 11 9 7 27 27 H 1.09000 * 109.21278 * 185.95088 * 12 11 9 28 28 H 1.08996 * 109.22176 * 66.61846 * 12 11 9 29 29 H 1.09002 * 109.78569 * 296.12643 * 13 12 11 30 30 H 1.08999 * 109.83331 * 175.32309 * 13 12 11 31 31 H 1.08002 * 119.78653 * 2.26511 * 16 15 14 32 32 H 1.07991 * 119.84436 * 180.16261 * 17 16 15 33 33 H 1.08001 * 120.08603 * 179.30728 * 18 17 16 34 34 H 1.08002 * 119.87542 * 179.90952 * 19 18 17 35 35 H 1.09001 * 111.17946 * 40.88693 * 21 20 19 36 36 H 1.09006 * 110.84367 * 276.98815 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6375 -2.5757 -0.8983 11 6 0.3625 -2.5927 1.2521 12 6 1.2141 -2.5648 2.5207 13 6 2.3030 -3.6494 2.4710 14 7 3.0756 -3.4474 1.2631 15 6 4.2615 -4.1229 1.0649 16 6 5.1890 -4.6675 1.9486 17 6 6.3386 -5.2634 1.4747 18 6 6.5840 -5.3236 0.1149 19 6 5.6646 -4.7965 -0.7742 20 6 4.5102 -4.2099 -0.3106 21 6 3.3074 -3.6227 -1.0391 22 6 2.2320 -3.6671 0.0613 23 1 1.7126 -4.6247 0.0991 24 1 -0.4849 0.8401 0.0004 25 1 -0.2052 -3.5226 1.2211 26 1 -0.3293 -1.7505 1.2654 27 1 0.5744 -2.7382 3.3860 28 1 1.6860 -1.5868 2.6146 29 1 1.8403 -4.6362 2.4523 30 1 2.9516 -3.5625 3.3426 31 1 5.0070 -4.6228 3.0123 32 1 7.0505 -5.6852 2.1685 33 1 7.4910 -5.7812 -0.2518 34 1 5.8562 -4.8418 -1.8361 35 1 3.0222 -4.2410 -1.8902 36 1 3.5056 -2.5973 -1.3513 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259966065.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:10 Heat of formation + Delta-G solvation = 23.804355 kcal Electronic energy + Delta-G solvation = -17905.996783 eV Core-core repulsion = 15354.086538 eV Total energy + Delta-G solvation = -2551.910245 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.92427 -38.68551 -35.54948 -34.54098 -33.06720 -31.19188 -29.66046 -28.02788 -26.79229 -24.85460 -22.45310 -22.03413 -21.88117 -20.64341 -18.07924 -17.63534 -16.69448 -16.64219 -16.34081 -15.47882 -15.21523 -14.89478 -14.71160 -14.03951 -13.95711 -13.65747 -13.64999 -13.23451 -12.94541 -12.88700 -12.70641 -12.49221 -12.15909 -11.97302 -11.59927 -11.53197 -11.36207 -11.09967 -10.66042 -10.53615 -10.30744 -9.59468 -8.21846 -7.99732 -6.04671 0.61071 0.66656 1.41226 1.42457 1.49268 2.48160 2.78283 3.05416 3.30438 3.70874 3.96264 4.12378 4.20626 4.28628 4.32170 4.35299 4.51929 4.59126 4.67719 4.70027 4.80245 4.81260 5.00625 5.02748 5.11048 5.17874 5.27294 5.44935 5.54745 5.62007 5.67932 5.73307 5.79162 5.88383 6.02991 6.15118 6.32137 6.54345 6.79650 7.00318 7.58504 9.05510 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026640 B = 0.008384 C = 0.007552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.797132 B = 3338.708746 C = 3706.799457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.013 3.987 3 Si 0.937 3.063 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.281 1.281 7 C -0.473 4.473 8 H 0.050 0.950 9 C 0.055 3.945 10 H 0.008 0.992 11 C -0.111 4.111 12 C -0.094 4.094 13 C 0.080 3.920 14 N -0.497 5.497 15 C 0.113 3.887 16 C -0.181 4.181 17 C -0.087 4.087 18 C -0.168 4.168 19 C -0.084 4.084 20 C -0.173 4.173 21 C -0.067 4.067 22 C 0.098 3.902 23 H 0.055 0.945 24 H 0.256 0.744 25 H 0.028 0.972 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.133 0.867 35 H 0.082 0.918 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.727 -10.636 2.613 14.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.184 4.184 3 Si 0.765 3.235 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.207 1.207 7 C -0.511 4.511 8 H 0.068 0.932 9 C 0.036 3.964 10 H 0.026 0.974 11 C -0.150 4.150 12 C -0.132 4.132 13 C -0.046 4.046 14 N -0.206 5.206 15 C 0.011 3.989 16 C -0.203 4.203 17 C -0.106 4.106 18 C -0.187 4.187 19 C -0.102 4.102 20 C -0.176 4.176 21 C -0.104 4.104 22 C -0.007 4.007 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.139 0.861 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.151 0.849 35 H 0.101 0.899 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.556 -9.998 2.729 13.439 hybrid contribution -0.205 0.823 0.040 0.849 sum 8.351 -9.176 2.769 12.712 Atomic orbital electron populations 1.69977 1.06692 1.26500 1.53112 1.25503 0.95400 1.01337 0.96177 0.85936 0.78489 0.80775 0.78302 1.20176 1.21360 1.20722 1.21068 0.92468 0.90510 1.47084 0.93204 1.18741 0.92085 0.91955 0.93596 0.97447 1.21539 0.98533 0.99286 0.95602 1.21405 0.96117 0.98036 0.97639 1.21749 0.94688 0.97578 0.90585 1.56567 1.04818 1.53964 1.05283 1.19587 0.92780 0.91411 0.95122 1.20485 0.96468 1.04592 0.98742 1.21096 0.95726 0.97429 0.96299 1.21199 1.00486 1.03960 0.93045 1.20550 0.92264 0.96683 1.00703 1.21058 0.98550 1.04215 0.93813 1.21179 0.91295 1.01024 0.96912 1.22843 0.93510 0.97522 0.86813 0.92723 0.93500 0.95312 0.91710 0.91395 0.93829 0.93797 0.90145 0.86055 0.83311 0.83408 0.84930 0.89919 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.63 11.34 21.45 0.24 -52.39 16 2 C 0.01 0.70 5.31 84.65 0.45 1.15 16 3 Si 0.94 44.74 29.54 68.60 2.03 46.77 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 6 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 7 C -0.47 -25.31 6.30 25.60 0.16 -25.15 16 8 H 0.05 2.77 6.54 -2.91 -0.02 2.75 16 9 C 0.05 2.67 2.44 -11.37 -0.03 2.64 16 10 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 11 C -0.11 -5.12 5.24 30.82 0.16 -4.96 16 12 C -0.09 -3.81 5.75 30.79 0.18 -3.64 16 13 C 0.08 2.87 5.90 86.96 0.51 3.39 16 14 N -0.50 -19.99 3.26 -670.53 -2.18 -22.17 16 15 C 0.11 4.16 6.30 38.86 0.24 4.40 16 16 C -0.18 -5.51 9.80 22.42 0.22 -5.29 16 17 C -0.09 -2.18 10.02 22.20 0.22 -1.95 16 18 C -0.17 -4.12 10.06 22.31 0.22 -3.89 16 19 C -0.08 -2.42 10.01 22.13 0.22 -2.20 16 20 C -0.17 -6.16 6.26 -19.05 -0.12 -6.28 16 21 C -0.07 -2.58 6.41 30.70 0.20 -2.38 16 22 C 0.10 4.05 2.76 44.81 0.12 4.17 16 23 H 0.05 2.14 8.11 -2.39 -0.02 2.12 16 24 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 25 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 3.40 6.08 -2.39 -0.01 3.39 16 27 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.04 2.02 7.62 -2.39 -0.02 2.00 16 29 H 0.04 1.45 8.09 -2.39 -0.02 1.44 16 30 H 0.08 2.58 7.86 -2.39 -0.02 2.56 16 31 H 0.12 3.32 7.82 -2.91 -0.02 3.30 16 32 H 0.15 2.67 8.06 -2.92 -0.02 2.64 16 33 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.13 3.22 8.06 -2.91 -0.02 3.20 16 35 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 36 H 0.08 3.31 6.38 -2.38 -0.02 3.30 16 Total: -1.00 -60.15 281.59 3.91 -56.24 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 1.06 Total: 11.55 kcal Atomic # 6 Polarization: -42.77 SS G_CDS: 2.77 Total: -40.00 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -1.94 Total: -74.56 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -60.15 3.91 -56.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966065.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.044 kcal (2) G-P(sol) polarization free energy of solvation -60.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds