Wall clock time and date at job start Mon Mar 30 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37791 * 120.10675 * 2 1 4 4 C 1.38793 * 120.66291 * 179.97438 * 3 2 1 5 5 C 1.36657 * 120.52970 * 0.02697 * 4 3 2 6 6 C 1.39597 * 119.76413 * 359.97438 * 5 4 3 7 7 C 1.46485 * 134.03449 * 179.97438 * 6 5 4 8 8 C 1.50699 * 126.50097 * 0.02562 * 7 6 5 9 9 C 1.53004 * 109.47118 * 85.00418 * 8 7 6 10 10 H 1.09007 * 109.46376 * 304.99830 * 9 8 7 11 11 C 1.52998 * 109.47200 * 64.99794 * 9 8 7 12 12 C 1.50701 * 109.47211 * 185.00261 * 9 8 7 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 9 8 14 14 C 1.37871 * 119.99694 * 180.27574 * 12 9 8 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 9 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 9 17 17 H 1.48504 * 109.47209 * 89.99886 * 16 14 12 18 18 H 1.48501 * 109.47358 * 209.99377 * 16 14 12 19 19 H 1.48496 * 109.47341 * 329.99989 * 16 14 12 20 20 C 1.34239 * 106.99900 * 180.28704 * 7 6 5 21 21 N 1.36833 * 109.93479 * 359.57581 * 20 7 6 22 22 H 0.97001 * 125.05941 * 180.19351 * 21 20 7 23 23 C 1.37687 * 109.87700 * 0.44033 * 21 20 7 24 24 H 1.08991 * 109.47713 * 89.99300 * 1 2 3 25 25 H 1.09004 * 109.46858 * 209.99830 * 1 2 3 26 26 H 1.09006 * 109.46914 * 329.99223 * 1 2 3 27 27 H 1.07997 * 119.67243 * 359.96359 * 3 2 1 28 28 H 1.08003 * 119.73524 * 180.02562 * 4 3 2 29 29 H 1.08002 * 120.12117 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.47482 * 325.00341 * 8 7 6 31 31 H 1.09000 * 109.47171 * 204.99750 * 8 7 6 32 32 H 1.08998 * 109.47156 * 60.00128 * 11 9 8 33 33 H 1.09004 * 109.46783 * 180.02562 * 11 9 8 34 34 H 1.09005 * 109.46870 * 300.00189 * 11 9 8 35 35 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 36 36 H 1.08000 * 125.03072 * 179.73507 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1920 0.0000 4 6 3.5861 1.2055 0.0005 5 6 4.2916 0.0352 0.0005 6 6 3.6117 -1.1840 0.0005 7 6 4.0354 -2.5862 0.0000 8 6 5.4544 -3.0938 -0.0001 9 6 5.9768 -3.1479 1.4369 10 1 5.8659 -2.1677 1.9009 11 6 5.1770 -4.1820 2.2318 12 6 7.4326 -3.5374 1.4279 13 1 7.9348 -3.7279 0.4909 14 6 8.1216 -3.6568 2.6161 15 7 7.5100 -3.4252 3.7571 16 14 9.9240 -4.1473 2.6053 17 1 10.7683 -2.9282 2.5253 18 1 10.2427 -4.8890 3.8517 19 1 10.1941 -5.0143 1.4304 20 6 2.9201 -3.3332 -0.0062 21 7 1.8166 -2.5242 -0.0001 22 1 0.8978 -2.8350 -0.0002 23 6 2.2047 -1.2031 0.0004 24 1 -0.3634 0.0001 -1.0275 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 1.6546 2.1252 -0.0006 28 1 4.1126 2.1485 0.0009 29 1 5.3715 0.0534 0.0005 30 1 6.0801 -2.4234 -0.5892 31 1 5.4827 -4.0930 -0.4348 32 1 5.2879 -5.1620 1.7679 33 1 5.5490 -4.2201 3.2557 34 1 4.1241 -3.9001 2.2383 35 1 7.9947 -3.5095 4.5930 36 1 2.8972 -4.4130 -0.0122 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259967682.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:27 Heat of formation + Delta-G solvation = 34.250762 kcal Electronic energy + Delta-G solvation = -16971.623832 eV Core-core repulsion = 14420.166577 eV Total energy + Delta-G solvation = -2551.457255 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.90707 -36.82201 -35.00910 -32.95945 -31.51719 -29.33741 -28.44480 -26.54477 -25.43398 -24.71225 -21.71048 -21.47559 -19.99170 -18.07874 -17.31823 -16.08077 -15.78320 -14.99975 -14.58085 -14.27583 -14.05074 -13.24492 -13.14951 -13.05478 -12.64950 -12.29339 -12.23962 -11.74816 -11.45443 -11.22343 -11.09348 -10.90957 -10.83555 -10.48868 -10.36333 -10.01075 -9.57013 -9.51265 -8.75272 -8.67369 -8.22733 -7.80663 -7.04079 -5.88169 -3.94837 1.48702 2.00559 3.20472 3.35851 3.42383 3.45624 3.51281 4.26939 4.51635 4.98079 5.08818 5.26262 5.38927 5.42008 5.49245 5.57288 5.68199 5.84320 5.91684 6.02170 6.20651 6.36513 6.45235 6.66934 6.78917 6.87962 6.91013 7.00324 7.12022 7.19479 7.25960 7.41365 7.55233 7.61919 7.84023 7.93322 8.15048 8.29316 8.57253 9.10103 9.69484 11.17359 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.035973 B = 0.005625 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.175953 B = 4976.459677 C = 5340.759918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.110 4.110 3 C -0.106 4.106 4 C -0.156 4.156 5 C -0.061 4.061 6 C -0.098 4.098 7 C -0.129 4.129 8 C -0.042 4.042 9 C 0.051 3.949 10 H 0.025 0.975 11 C -0.134 4.134 12 C -0.511 4.511 13 H 0.054 0.946 14 C 0.060 3.940 15 N -0.890 5.890 16 Si 0.888 3.112 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.275 1.275 20 C 0.027 3.973 21 N -0.600 5.600 22 H 0.408 0.592 23 C 0.098 3.902 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.020 0.980 33 H 0.077 0.923 34 H 0.008 0.992 35 H 0.258 0.742 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.813 4.947 -7.478 15.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.113 4.113 3 C -0.125 4.125 4 C -0.175 4.175 5 C -0.080 4.080 6 C -0.103 4.103 7 C -0.135 4.135 8 C -0.080 4.080 9 C 0.032 3.968 10 H 0.043 0.957 11 C -0.192 4.192 12 C -0.550 4.550 13 H 0.072 0.928 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.716 3.284 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.200 1.200 20 C -0.097 4.097 21 N -0.203 5.203 22 H 0.244 0.756 23 C -0.010 4.010 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.141 0.859 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.096 0.904 34 H 0.027 0.973 35 H 0.068 0.932 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.877 4.844 -7.280 15.565 hybrid contribution 0.569 -0.497 0.213 0.785 sum -12.307 4.347 -7.067 14.843 Atomic orbital electron populations 1.20626 0.91920 1.02135 1.01544 1.18743 0.94820 0.90405 1.07311 1.20580 0.94161 0.95961 1.01816 1.20524 0.93850 0.97706 1.05428 1.20385 0.99947 0.90567 0.97058 1.19197 0.91590 0.93730 1.05776 1.20770 0.96121 0.90242 1.06402 1.20229 0.88258 0.98721 1.00774 1.18597 0.93689 0.95803 0.88681 0.95651 1.21783 0.95786 0.97772 1.03810 1.21248 0.95111 1.46229 0.92370 0.92783 1.24958 0.97847 0.95532 0.95702 1.69908 1.35874 1.49893 0.97301 0.86665 0.85836 0.78568 0.77319 1.20781 1.21390 1.19988 1.21554 0.85011 0.95979 1.07154 1.41608 1.08100 1.03985 1.66619 0.75649 1.18046 0.93831 0.84574 1.04527 0.91885 0.92721 0.91582 0.86479 0.86490 0.85854 0.92617 0.92738 0.96073 0.90424 0.97260 0.93214 0.81856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.02 36.01 0.36 -0.74 16 2 C -0.11 -1.57 5.89 -104.47 -0.62 -2.18 16 3 C -0.11 -1.47 9.67 -39.54 -0.38 -1.85 16 4 C -0.16 -2.34 9.97 -39.95 -0.40 -2.74 16 5 C -0.06 -1.08 10.05 -39.65 -0.40 -1.48 16 6 C -0.10 -1.85 6.35 -105.14 -0.67 -2.52 16 7 C -0.13 -2.49 4.88 -102.71 -0.50 -2.99 16 8 C -0.04 -0.89 5.16 -27.88 -0.14 -1.04 16 9 C 0.05 1.30 2.29 -91.77 -0.21 1.09 16 10 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 11 C -0.13 -3.32 8.73 37.16 0.32 -2.99 16 12 C -0.51 -14.23 8.56 -34.44 -0.29 -14.52 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 15 N -0.89 -26.15 11.31 55.43 0.63 -25.52 16 16 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.03 0.43 10.76 -16.73 -0.18 0.25 16 21 N -0.60 -8.67 6.07 -10.65 -0.06 -8.73 16 22 H 0.41 4.39 8.87 -40.82 -0.36 4.03 16 23 C 0.10 1.61 6.95 -83.99 -0.58 1.03 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.53 7.99 -51.93 -0.42 0.11 16 26 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 27 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 29 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 2.15 6.06 -51.93 -0.31 1.83 16 34 H 0.01 0.19 6.67 -51.93 -0.35 -0.15 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.16 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 299.50 15.07 4.51 4.51 Total: -1.00 -31.00 299.50 -8.94 -39.94 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -5.20 Total: 2.35 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: -3.79 Total: -29.09 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.56 Total: -34.25 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.00 -8.94 -39.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259967682.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.189 kcal (2) G-P(sol) polarization free energy of solvation -31.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds