Wall clock time and date at job start Mon Mar 30 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37791 * 120.10675 * 2 1 4 4 C 1.38793 * 120.66291 * 179.97438 * 3 2 1 5 5 C 1.36657 * 120.52970 * 0.02697 * 4 3 2 6 6 C 1.39597 * 119.76413 * 359.97438 * 5 4 3 7 7 C 1.46485 * 134.03449 * 179.97438 * 6 5 4 8 8 C 1.50699 * 126.50097 * 0.02562 * 7 6 5 9 9 C 1.53004 * 109.47118 * 85.00418 * 8 7 6 10 10 H 1.09007 * 109.46376 * 304.99830 * 9 8 7 11 11 C 1.52998 * 109.47200 * 64.99794 * 9 8 7 12 12 C 1.50701 * 109.47211 * 185.00261 * 9 8 7 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 9 8 14 14 C 1.37871 * 119.99694 * 180.27574 * 12 9 8 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 9 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 9 17 17 H 1.48504 * 109.47209 * 89.99886 * 16 14 12 18 18 H 1.48501 * 109.47358 * 209.99377 * 16 14 12 19 19 H 1.48496 * 109.47341 * 329.99989 * 16 14 12 20 20 C 1.34239 * 106.99900 * 180.28704 * 7 6 5 21 21 N 1.36833 * 109.93479 * 359.57581 * 20 7 6 22 22 H 0.97001 * 125.05941 * 180.19351 * 21 20 7 23 23 C 1.37687 * 109.87700 * 0.44033 * 21 20 7 24 24 H 1.08991 * 109.47713 * 89.99300 * 1 2 3 25 25 H 1.09004 * 109.46858 * 209.99830 * 1 2 3 26 26 H 1.09006 * 109.46914 * 329.99223 * 1 2 3 27 27 H 1.07997 * 119.67243 * 359.96359 * 3 2 1 28 28 H 1.08003 * 119.73524 * 180.02562 * 4 3 2 29 29 H 1.08002 * 120.12117 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.47482 * 325.00341 * 8 7 6 31 31 H 1.09000 * 109.47171 * 204.99750 * 8 7 6 32 32 H 1.08998 * 109.47156 * 60.00128 * 11 9 8 33 33 H 1.09004 * 109.46783 * 180.02562 * 11 9 8 34 34 H 1.09005 * 109.46870 * 300.00189 * 11 9 8 35 35 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 36 36 H 1.08000 * 125.03072 * 179.73507 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1920 0.0000 4 6 3.5861 1.2055 0.0005 5 6 4.2916 0.0352 0.0005 6 6 3.6117 -1.1840 0.0005 7 6 4.0354 -2.5862 0.0000 8 6 5.4544 -3.0938 -0.0001 9 6 5.9768 -3.1479 1.4369 10 1 5.8659 -2.1677 1.9009 11 6 5.1770 -4.1820 2.2318 12 6 7.4326 -3.5374 1.4279 13 1 7.9348 -3.7279 0.4909 14 6 8.1216 -3.6568 2.6161 15 7 7.5100 -3.4252 3.7571 16 14 9.9240 -4.1473 2.6053 17 1 10.7683 -2.9282 2.5253 18 1 10.2427 -4.8890 3.8517 19 1 10.1941 -5.0143 1.4304 20 6 2.9201 -3.3332 -0.0062 21 7 1.8166 -2.5242 -0.0001 22 1 0.8978 -2.8350 -0.0002 23 6 2.2047 -1.2031 0.0004 24 1 -0.3634 0.0001 -1.0275 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 1.6546 2.1252 -0.0006 28 1 4.1126 2.1485 0.0009 29 1 5.3715 0.0534 0.0005 30 1 6.0801 -2.4234 -0.5892 31 1 5.4827 -4.0930 -0.4348 32 1 5.2879 -5.1620 1.7679 33 1 5.5490 -4.2201 3.2557 34 1 4.1241 -3.9001 2.2383 35 1 7.9947 -3.5095 4.5930 36 1 2.8972 -4.4130 -0.0122 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259967682.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:27 Heat of formation + Delta-G solvation = 17.674699 kcal Electronic energy + Delta-G solvation = -16972.342624 eV Core-core repulsion = 14420.166577 eV Total energy + Delta-G solvation = -2552.176047 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.14585 -38.04098 -36.85563 -34.38593 -33.23400 -30.75004 -29.82907 -27.57082 -27.34747 -26.62574 -22.88612 -22.69258 -21.85344 -19.53914 -18.58569 -18.18906 -16.99062 -16.57767 -16.18421 -15.54569 -15.28983 -14.89688 -14.70880 -14.24128 -13.94060 -13.82058 -13.46715 -13.16775 -13.05108 -12.85649 -12.79100 -12.39301 -12.29254 -12.19528 -12.11041 -11.71772 -11.45025 -11.35268 -10.76059 -10.39903 -10.10795 -9.03595 -8.33678 -8.03079 -6.18969 0.27265 0.78725 1.42814 1.43040 1.53806 1.87851 2.35802 2.46759 3.02998 3.22678 3.89917 3.98900 4.15707 4.28915 4.44612 4.48694 4.58990 4.76980 4.83278 4.84623 4.91671 4.97295 5.07625 5.08675 5.19394 5.23835 5.36080 5.41198 5.53202 5.64612 5.70357 5.77135 5.90697 5.96652 6.07301 6.23250 6.35399 6.43856 6.85170 6.94886 7.49414 9.00470 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.035973 B = 0.005625 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.175953 B = 4976.459677 C = 5340.759918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.105 4.105 3 C -0.111 4.111 4 C -0.150 4.150 5 C -0.102 4.102 6 C -0.131 4.131 7 C -0.179 4.179 8 C -0.025 4.025 9 C 0.052 3.948 10 H -0.018 1.018 11 C -0.118 4.118 12 C -0.532 4.532 13 H 0.054 0.946 14 C 0.009 3.991 15 N -0.921 5.921 16 Si 0.954 3.046 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.265 1.265 20 C 0.050 3.950 21 N -0.583 5.583 22 H 0.428 0.572 23 C 0.083 3.917 24 H 0.080 0.920 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.154 0.846 28 H 0.138 0.862 29 H 0.103 0.897 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.030 0.970 33 H 0.045 0.955 34 H 0.026 0.974 35 H 0.259 0.741 36 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.789 5.004 -8.211 17.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.108 4.108 3 C -0.130 4.130 4 C -0.169 4.169 5 C -0.121 4.121 6 C -0.136 4.136 7 C -0.185 4.185 8 C -0.063 4.063 9 C 0.033 3.967 10 H 0.000 1.000 11 C -0.176 4.176 12 C -0.570 4.570 13 H 0.072 0.928 14 C -0.189 4.189 15 N -0.561 5.561 16 Si 0.780 3.220 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.190 1.190 20 C -0.075 4.075 21 N -0.188 5.188 22 H 0.268 0.732 23 C -0.025 4.025 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.171 0.829 28 H 0.156 0.844 29 H 0.121 0.879 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.068 0.932 36 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -14.888 4.906 -8.027 17.611 hybrid contribution 1.109 -0.437 0.427 1.266 sum -13.779 4.470 -7.600 16.358 Atomic orbital electron populations 1.20710 0.88731 1.03538 1.03026 1.19275 0.97125 0.89496 1.04912 1.21032 0.93626 0.97522 1.00813 1.20845 0.94932 0.97501 1.03589 1.20450 0.99387 0.91905 1.00312 1.19487 0.93393 0.93786 1.06953 1.20620 0.95683 0.91446 1.10796 1.19872 0.89929 0.98950 0.97599 1.18508 0.93360 0.93552 0.91260 1.00026 1.21568 0.96455 0.97942 1.01653 1.21636 0.96587 1.46230 0.92513 0.92789 1.25776 1.02286 0.95485 0.95305 1.70061 1.37552 1.50672 0.97823 0.85614 0.80406 0.78355 0.77627 1.20361 1.20917 1.18953 1.21856 0.84636 0.97037 1.04020 1.41540 1.08750 1.03152 1.65329 0.73233 1.18297 0.93019 0.85978 1.05195 0.90189 0.91856 0.89746 0.82852 0.84397 0.87920 0.94052 0.91865 0.95091 0.93565 0.95517 0.93222 0.79174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.73 10.02 71.24 0.71 -1.02 16 2 C -0.11 -2.73 5.89 -19.77 -0.12 -2.85 16 3 C -0.11 -2.81 9.67 22.30 0.22 -2.59 16 4 C -0.15 -4.45 9.97 22.03 0.22 -4.23 16 5 C -0.10 -3.81 10.05 22.23 0.22 -3.58 16 6 C -0.13 -5.08 6.35 -20.20 -0.13 -5.21 16 7 C -0.18 -7.03 4.88 -18.63 -0.09 -7.12 16 8 C -0.03 -1.13 5.16 29.85 0.15 -0.98 16 9 C 0.05 2.76 2.29 -11.54 -0.03 2.74 16 10 H -0.02 -1.13 8.14 -2.38 -0.02 -1.15 16 11 C -0.12 -5.98 8.73 71.98 0.63 -5.35 16 12 C -0.53 -30.46 8.56 25.60 0.22 -30.24 16 13 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 14 C 0.01 0.54 5.30 84.65 0.45 0.99 16 15 N -0.92 -55.65 11.31 21.45 0.24 -55.40 16 16 Si 0.95 44.84 29.54 68.60 2.03 46.87 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 C 0.05 1.56 10.76 83.00 0.89 2.46 16 21 N -0.58 -15.54 6.07 -187.61 -1.14 -16.68 16 22 H 0.43 7.79 8.87 -92.71 -0.82 6.97 16 23 C 0.08 2.62 6.95 39.03 0.27 2.89 16 24 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 0.97 7.99 -2.38 -0.02 0.95 16 26 H 0.08 1.14 8.09 -2.38 -0.02 1.12 16 27 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 28 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 29 H 0.10 4.05 8.06 -2.91 -0.02 4.02 16 30 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 2.61 6.06 -2.38 -0.01 2.60 16 34 H 0.03 1.20 6.67 -2.38 -0.02 1.18 16 35 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 36 H 0.19 4.77 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -69.49 299.50 5.00 -64.49 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.25 Total: 14.82 kcal Atomic # 6 Polarization: -57.72 SS G_CDS: 3.63 Total: -54.09 kcal Atomic # 7 Polarization: -71.19 SS G_CDS: -0.90 Total: -72.08 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -69.49 5.00 -64.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259967682.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.161 kcal (2) G-P(sol) polarization free energy of solvation -69.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds