Wall clock time and date at job start Mon Mar 30 2020 06:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37797 * 120.10766 * 2 1 4 4 C 1.38785 * 120.66211 * 180.23417 * 3 2 1 5 5 C 1.36662 * 120.53174 * 359.46367 * 4 3 2 6 6 C 1.39598 * 119.76431 * 0.54657 * 5 4 3 7 7 C 1.46490 * 134.04480 * 179.73205 * 6 5 4 8 8 C 1.50702 * 126.49498 * 0.02562 * 7 6 5 9 9 C 1.52995 * 109.47093 * 85.00430 * 8 7 6 10 10 H 1.09002 * 109.47795 * 54.99100 * 9 8 7 11 11 C 1.53008 * 109.46868 * 294.99554 * 9 8 7 12 12 C 1.50698 * 109.47319 * 174.99729 * 9 8 7 13 13 H 1.07999 * 120.00115 * 359.97438 * 12 9 8 14 14 C 1.37875 * 120.00240 * 179.97438 * 12 9 8 15 15 N 1.31520 * 119.99963 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 120.00261 * 179.97438 * 14 12 9 17 17 H 1.48502 * 109.47070 * 60.00565 * 16 14 12 18 18 H 1.48501 * 109.47530 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47279 * 300.00781 * 16 14 12 20 20 C 1.34235 * 107.00215 * 179.97438 * 7 6 5 21 21 N 1.36838 * 109.93691 * 0.02562 * 20 7 6 22 22 H 0.96999 * 125.05805 * 179.97438 * 21 20 7 23 23 C 1.37689 * 109.87309 * 359.97438 * 21 20 7 24 24 H 1.09005 * 109.46970 * 90.00431 * 1 2 3 25 25 H 1.08999 * 109.46457 * 209.99894 * 1 2 3 26 26 H 1.08995 * 109.47160 * 330.00057 * 1 2 3 27 27 H 1.08002 * 119.66599 * 359.95163 * 3 2 1 28 28 H 1.08002 * 119.73472 * 179.74489 * 4 3 2 29 29 H 1.07997 * 120.12537 * 180.24161 * 5 4 3 30 30 H 1.09006 * 109.46555 * 204.99821 * 8 7 6 31 31 H 1.08996 * 109.47389 * 324.99988 * 8 7 6 32 32 H 1.09003 * 109.47247 * 180.02562 * 11 9 8 33 33 H 1.08997 * 109.46853 * 299.99985 * 11 9 8 34 34 H 1.08994 * 109.46964 * 59.99942 * 11 9 8 35 35 H 0.96998 * 119.99613 * 179.97438 * 15 14 12 36 36 H 1.07992 * 125.03135 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1921 0.0000 4 6 3.5860 1.2055 -0.0049 5 6 4.2917 0.0352 0.0012 6 6 3.6118 -1.1840 0.0009 7 6 4.0354 -2.5864 0.0014 8 6 5.4543 -3.0940 0.0029 9 6 5.9752 -3.1476 1.4404 10 1 5.2986 -3.7465 2.0501 11 6 6.0524 -1.7288 2.0080 12 6 7.3478 -3.7696 1.4545 13 1 7.8029 -4.0947 0.5306 14 6 8.0226 -3.9238 2.6469 15 7 7.4683 -3.5284 3.7721 16 14 9.7237 -4.6955 2.6644 17 1 10.6457 -3.8803 1.8334 18 1 10.2294 -4.7474 4.0597 19 1 9.6482 -6.0728 2.1142 20 6 2.9200 -3.3333 0.0013 21 7 1.8165 -2.5241 0.0003 22 1 0.8977 -2.8349 -0.0003 23 6 2.2048 -1.2031 0.0003 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3632 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.6546 2.1252 -0.0008 28 1 4.1126 2.1484 -0.0090 29 1 5.3715 0.0533 0.0013 30 1 5.4830 -4.0934 -0.4314 31 1 6.0806 -2.4239 -0.5859 32 1 6.4240 -1.7669 3.0321 33 1 6.7290 -1.1300 1.3984 34 1 5.0597 -1.2789 1.9978 35 1 7.9429 -3.6373 4.6110 36 1 2.8970 -4.4130 0.0019 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259967687.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:29 Heat of formation + Delta-G solvation = 18.702490 kcal Electronic energy + Delta-G solvation = -17062.765771 eV Core-core repulsion = 14510.634293 eV Total energy + Delta-G solvation = -2552.131478 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.14972 -37.97061 -36.93621 -34.39223 -33.13627 -30.70811 -30.00640 -27.64181 -27.14916 -26.59020 -22.87029 -22.66378 -21.96224 -19.38231 -18.65723 -18.16656 -17.02297 -16.57816 -16.17559 -15.56273 -15.16837 -14.87055 -14.66798 -14.23084 -14.06309 -13.85460 -13.42468 -13.13543 -13.05432 -12.78373 -12.67071 -12.53524 -12.31704 -12.21417 -12.06138 -11.65554 -11.41230 -11.35168 -10.75095 -10.38781 -10.06902 -9.01899 -8.34310 -8.01186 -6.18318 0.29415 0.80760 1.43248 1.45216 1.52600 1.88337 2.36825 2.47239 3.05435 3.23258 3.91561 3.99892 4.17049 4.30452 4.45903 4.50302 4.58744 4.78163 4.83430 4.87038 4.91252 5.00500 5.07379 5.11074 5.18586 5.28060 5.38168 5.41541 5.55911 5.65689 5.71909 5.79492 5.91910 5.96529 6.09365 6.20286 6.36828 6.44560 6.85418 6.95207 7.49934 9.00923 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.039725 B = 0.005590 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.682170 B = 5007.580886 C = 5330.845385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.107 4.107 3 C -0.110 4.110 4 C -0.152 4.152 5 C -0.094 4.094 6 C -0.122 4.122 7 C -0.180 4.180 8 C -0.026 4.026 9 C 0.052 3.948 10 H -0.010 1.010 11 C -0.114 4.114 12 C -0.533 4.533 13 H 0.055 0.945 14 C 0.010 3.990 15 N -0.921 5.921 16 Si 0.954 3.046 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.269 1.269 20 C 0.044 3.956 21 N -0.584 5.584 22 H 0.427 0.573 23 C 0.080 3.920 24 H 0.079 0.921 25 H 0.061 0.939 26 H 0.083 0.917 27 H 0.152 0.848 28 H 0.138 0.862 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.018 0.982 34 H 0.026 0.974 35 H 0.259 0.741 36 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.247 6.161 -8.297 17.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.110 4.110 3 C -0.129 4.129 4 C -0.171 4.171 5 C -0.113 4.113 6 C -0.127 4.127 7 C -0.186 4.186 8 C -0.064 4.064 9 C 0.033 3.967 10 H 0.009 0.991 11 C -0.172 4.172 12 C -0.571 4.571 13 H 0.073 0.927 14 C -0.188 4.188 15 N -0.561 5.561 16 Si 0.780 3.220 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.194 1.194 20 C -0.082 4.082 21 N -0.188 5.188 22 H 0.267 0.733 23 C -0.028 4.028 24 H 0.097 0.903 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.170 0.830 28 H 0.156 0.844 29 H 0.124 0.876 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.045 0.955 35 H 0.068 0.932 36 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -14.343 6.074 -8.112 17.562 hybrid contribution 0.989 -0.682 0.434 1.277 sum -13.355 5.393 -7.678 16.321 Atomic orbital electron populations 1.20705 0.88885 1.03467 1.02959 1.19256 0.97045 0.89533 1.05130 1.21018 0.93708 0.97423 1.00785 1.20853 0.94871 0.97619 1.03802 1.20460 0.99442 0.91634 0.99744 1.19377 0.93052 0.93565 1.06659 1.20650 0.95595 0.91685 1.10705 1.19878 0.90041 0.98834 0.97638 1.18544 0.93845 0.92980 0.91301 0.99138 1.21601 0.97088 0.97548 1.00969 1.21615 1.02812 1.39536 0.93126 0.92715 1.25777 1.01561 0.96124 0.95351 1.70061 1.39321 1.48346 0.98356 0.85674 0.80179 0.79249 0.76918 1.19675 1.21128 1.19407 1.21884 0.84818 0.97149 1.04345 1.41534 1.08681 1.03216 1.65404 0.73311 1.18335 0.93236 0.85894 1.05300 0.90265 0.91952 0.89788 0.82998 0.84443 0.87641 0.92272 0.93570 0.93754 0.96237 0.95539 0.93226 0.79243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.74 10.02 71.24 0.71 -1.03 16 2 C -0.11 -2.75 5.89 -19.77 -0.12 -2.87 16 3 C -0.11 -2.75 9.67 22.30 0.22 -2.53 16 4 C -0.15 -4.42 9.97 22.03 0.22 -4.20 16 5 C -0.09 -3.39 8.70 22.23 0.19 -3.20 16 6 C -0.12 -4.58 5.24 -20.20 -0.11 -4.69 16 7 C -0.18 -7.02 5.07 -18.63 -0.09 -7.12 16 8 C -0.03 -1.14 5.16 29.85 0.15 -0.99 16 9 C 0.05 2.76 2.29 -11.54 -0.03 2.73 16 10 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 11 C -0.11 -6.03 8.01 71.98 0.58 -5.45 16 12 C -0.53 -30.37 8.56 25.60 0.22 -30.16 16 13 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 14 C 0.01 0.56 5.30 84.65 0.45 1.01 16 15 N -0.92 -55.51 11.32 21.45 0.24 -55.27 16 16 Si 0.95 44.66 29.54 68.60 2.03 46.69 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 18 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 C 0.04 1.38 11.73 83.00 0.97 2.35 16 21 N -0.58 -15.65 6.07 -187.61 -1.14 -16.79 16 22 H 0.43 7.91 8.87 -92.71 -0.82 7.09 16 23 C 0.08 2.51 6.95 39.03 0.27 2.78 16 24 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 25 H 0.06 0.96 7.99 -2.39 -0.02 0.94 16 26 H 0.08 1.14 8.09 -2.39 -0.02 1.13 16 27 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 28 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 29 H 0.11 4.00 7.35 -2.91 -0.02 3.98 16 30 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 31 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.04 2.58 6.07 -2.39 -0.01 2.57 16 33 H 0.02 0.97 7.78 -2.39 -0.02 0.95 16 34 H 0.03 1.29 5.49 -2.39 -0.01 1.28 16 35 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.19 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -68.54 295.23 5.02 -63.52 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.25 Total: 15.21 kcal Atomic # 6 Polarization: -57.00 SS G_CDS: 3.64 Total: -53.36 kcal Atomic # 7 Polarization: -71.16 SS G_CDS: -0.90 Total: -72.06 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -68.54 5.02 -63.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259967687.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.219 kcal (2) G-P(sol) polarization free energy of solvation -68.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds