Wall clock time and date at job start Mon Mar 30 2020 05:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47001 * 2 1 4 4 C 1.50695 * 109.47345 * 120.00039 * 2 1 3 5 5 H 1.08007 * 120.00175 * 114.35828 * 4 2 1 6 6 C 1.37874 * 120.00312 * 294.36111 * 4 2 1 7 7 N 1.31515 * 120.00244 * 156.98540 * 6 4 2 8 8 Si 1.86804 * 120.00047 * 336.98877 * 6 4 2 9 9 H 1.48500 * 109.47334 * 179.97438 * 8 6 4 10 10 H 1.48507 * 109.46876 * 300.00098 * 8 6 4 11 11 H 1.48494 * 109.46970 * 59.99576 * 8 6 4 12 12 C 1.50700 * 109.47089 * 240.00310 * 2 1 3 13 13 C 1.38281 * 119.92981 * 299.72590 * 12 2 1 14 14 C 1.38132 * 120.05930 * 179.72450 * 13 12 2 15 15 C 1.38834 * 119.93425 * 0.52790 * 14 13 12 16 16 N 1.40196 * 120.06455 * 179.77029 * 15 14 13 17 17 C 1.34726 * 126.84148 * 359.68501 * 16 15 14 18 18 N 1.30846 * 108.03300 * 179.89491 * 17 16 15 19 19 C 1.33270 * 109.83906 * 0.37893 * 18 17 16 20 20 N 1.30744 * 109.00259 * 359.76424 * 19 18 17 21 21 C 1.38836 * 119.86832 * 359.74394 * 15 14 13 22 22 C 1.38118 * 119.93073 * 0.02562 * 21 15 14 23 23 H 1.09004 * 109.46915 * 173.28650 * 1 2 3 24 24 H 1.08999 * 109.47196 * 293.28138 * 1 2 3 25 25 H 1.09002 * 109.47344 * 53.28347 * 1 2 3 26 26 H 0.96999 * 119.99818 * 354.92786 * 7 6 4 27 27 H 1.07988 * 119.96831 * 359.97438 * 13 12 2 28 28 H 1.07996 * 120.02576 * 180.29074 * 14 13 12 29 29 H 1.08001 * 125.98272 * 0.03691 * 17 16 15 30 30 H 1.08004 * 125.49341 * 179.74170 * 19 18 17 31 31 H 1.07994 * 120.03228 * 180.02562 * 21 15 14 32 32 H 1.08008 * 119.96253 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7979 -0.1755 2.4793 7 7 1.8101 -0.9525 3.5403 8 14 1.4627 1.6528 2.6645 9 1 1.2434 1.9733 4.0978 10 1 2.6265 2.4233 2.1570 11 1 0.2515 2.0154 1.8857 12 6 2.0323 -0.7103 -1.2305 13 6 1.7021 -2.0359 -1.4451 14 6 2.1563 -2.6879 -2.5749 15 6 2.9542 -2.0144 -3.4899 16 7 3.4208 -2.6749 -4.6351 17 6 3.1861 -3.9558 -4.9808 18 7 3.7934 -4.1865 -6.1166 19 6 4.4291 -3.0872 -6.5210 20 7 4.2308 -2.1350 -5.6474 21 6 3.2887 -0.6852 -3.2687 22 6 2.8276 -0.0371 -2.1396 23 1 -0.3633 -1.0207 -0.1201 24 1 -0.3633 0.4062 0.9440 25 1 -0.3634 0.6144 -0.8238 26 1 1.9107 -1.9118 3.4378 27 1 1.0851 -2.5605 -0.7308 28 1 1.8942 -3.7218 -2.7443 29 1 2.5977 -4.6668 -4.4199 30 1 5.0140 -2.9977 -7.4246 31 1 3.9089 -0.1585 -3.9789 32 1 3.0872 0.9970 -1.9673 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259969886.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:53 Heat of formation + Delta-G solvation = 111.114353 kcal Electronic energy + Delta-G solvation = -16382.008384 eV Core-core repulsion = 13730.343841 eV Total energy + Delta-G solvation = -2651.664543 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.29430 -39.14312 -35.30133 -33.22348 -31.61405 -31.37166 -30.54735 -28.17683 -24.89143 -23.88251 -23.27800 -21.58721 -21.06659 -19.65525 -18.27105 -17.47630 -15.81553 -15.69755 -15.36136 -14.55497 -14.19537 -13.99086 -13.65158 -13.25766 -13.02961 -12.56677 -12.51256 -12.20728 -11.97206 -11.40298 -10.86810 -10.67878 -10.44770 -10.40699 -10.15645 -9.93721 -9.92139 -9.82432 -9.09278 -8.73986 -8.29814 -7.88229 -6.54485 -4.16787 0.90808 1.63037 2.19669 2.23354 2.82957 3.33748 3.38655 3.55614 4.09804 4.16746 4.42959 4.47428 4.82147 5.03356 5.10630 5.22147 5.49288 5.64685 5.77122 5.84418 6.11684 6.17275 6.29357 6.34820 6.41926 6.58381 6.62149 6.72103 6.87527 6.89605 7.09253 7.30697 7.41854 7.94233 7.97930 8.28527 8.79222 9.48551 10.80899 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.051465 B = 0.004991 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.923850 B = 5608.284825 C = 5800.096097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.044 3.956 3 H 0.031 0.969 4 C -0.603 4.603 5 H 0.060 0.940 6 C 0.040 3.960 7 N -0.895 5.895 8 Si 1.035 2.965 9 H -0.285 1.285 10 H -0.283 1.283 11 H -0.276 1.276 12 C -0.018 4.018 13 C -0.087 4.087 14 C -0.130 4.130 15 C 0.105 3.895 16 N -0.311 5.311 17 C 0.253 3.747 18 N -0.546 5.546 19 C 0.194 3.806 20 N -0.317 5.317 21 C -0.106 4.106 22 C -0.113 4.113 23 H 0.045 0.955 24 H 0.054 0.946 25 H 0.024 0.976 26 H 0.270 0.730 27 H 0.136 0.864 28 H 0.123 0.877 29 H 0.220 0.780 30 H 0.219 0.781 31 H 0.129 0.871 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.303 -1.961 -14.077 14.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.025 3.975 3 H 0.049 0.951 4 C -0.640 4.640 5 H 0.078 0.922 6 C -0.167 4.167 7 N -0.528 5.528 8 Si 0.863 3.137 9 H -0.211 1.211 10 H -0.209 1.209 11 H -0.202 1.202 12 C -0.018 4.018 13 C -0.105 4.105 14 C -0.150 4.150 15 C 0.013 3.987 16 N -0.095 5.095 17 C -0.042 4.042 18 N -0.273 5.273 19 C -0.108 4.108 20 N -0.144 5.144 21 C -0.126 4.126 22 C -0.132 4.132 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.080 0.920 27 H 0.154 0.846 28 H 0.141 0.859 29 H 0.236 0.764 30 H 0.235 0.765 31 H 0.147 0.853 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.337 -0.369 -13.187 13.197 hybrid contribution 0.289 -1.404 -0.986 1.740 sum 0.626 -1.773 -14.174 14.298 Atomic orbital electron populations 1.22181 0.97831 1.00087 0.99766 1.18236 0.92507 0.95625 0.91135 0.95131 1.21851 1.41142 1.10685 0.90317 0.92209 1.25710 0.93207 1.05713 0.92021 1.70854 1.43562 1.06455 1.31901 0.84157 0.77276 0.76043 0.76224 1.21070 1.20910 1.20193 1.20541 0.92660 0.93809 0.94837 1.20935 0.99581 0.94627 0.95377 1.20751 0.99630 0.99812 0.94839 1.17459 1.01864 0.93337 0.86012 1.47714 1.35729 1.09272 1.16765 1.26103 0.98213 0.86428 0.93465 1.70590 1.15867 1.28840 1.11984 1.26071 0.98803 0.86314 0.99644 1.78092 1.13580 1.23079 0.99661 1.20795 1.00878 0.92297 0.98646 1.21092 0.98365 1.00413 0.93334 0.93583 0.92674 0.95682 0.92004 0.84614 0.85877 0.76378 0.76457 0.85266 0.85359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.83 37.16 0.33 -2.52 16 2 C 0.04 0.96 2.07 -92.93 -0.19 0.77 16 3 H 0.03 0.67 6.45 -51.93 -0.33 0.33 16 4 C -0.60 -15.67 8.47 -34.44 -0.29 -15.97 16 5 H 0.06 1.69 7.76 -52.48 -0.41 1.28 16 6 C 0.04 1.09 5.20 -17.82 -0.09 0.99 16 7 N -0.90 -26.11 13.70 55.43 0.76 -25.35 16 8 Si 1.04 23.74 26.44 -169.99 -4.49 19.24 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 11 H -0.28 -5.83 6.14 56.52 0.35 -5.48 16 12 C -0.02 -0.34 4.75 -104.59 -0.50 -0.84 16 13 C -0.09 -1.51 8.55 -39.60 -0.34 -1.85 16 14 C -0.13 -1.92 9.47 -39.40 -0.37 -2.29 16 15 C 0.10 1.64 6.70 -83.59 -0.56 1.08 16 16 N -0.31 -4.62 3.82 -11.81 -0.05 -4.67 16 17 C 0.25 3.19 11.98 -90.37 -1.08 2.11 16 18 N -0.55 -7.32 11.19 -15.74 -0.18 -7.50 16 19 C 0.19 2.44 13.03 -91.76 -1.20 1.24 16 20 N -0.32 -4.74 12.06 29.30 0.35 -4.39 16 21 C -0.11 -1.72 9.68 -39.40 -0.38 -2.10 16 22 C -0.11 -1.95 9.66 -39.61 -0.38 -2.33 16 23 H 0.05 0.89 7.19 -51.93 -0.37 0.51 16 24 H 0.05 1.17 5.46 -51.93 -0.28 0.89 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.27 7.83 8.73 -40.82 -0.36 7.47 16 27 H 0.14 2.38 7.55 -52.49 -0.40 1.98 16 28 H 0.12 1.39 6.81 -52.49 -0.36 1.03 16 29 H 0.22 1.86 7.10 -52.49 -0.37 1.48 16 30 H 0.22 1.79 8.06 -52.48 -0.42 1.37 16 31 H 0.13 1.97 7.74 -52.49 -0.41 1.56 16 32 H 0.13 2.00 7.94 -52.48 -0.42 1.59 16 LS Contribution 274.88 15.07 4.14 4.14 Total: -1.00 -30.33 274.88 -7.92 -38.26 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -3.40 Total: 1.96 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -5.06 Total: -21.70 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.89 Total: -41.90 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -4.49 Total: 19.24 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.33 -7.92 -38.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259969886.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.370 kcal (2) G-P(sol) polarization free energy of solvation -30.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds