Wall clock time and date at job start Mon Mar 30 2020 05:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47001 * 2 1 4 4 C 1.50695 * 109.47345 * 120.00039 * 2 1 3 5 5 H 1.08007 * 120.00175 * 114.35828 * 4 2 1 6 6 C 1.37874 * 120.00312 * 294.36111 * 4 2 1 7 7 N 1.31515 * 120.00244 * 156.98540 * 6 4 2 8 8 Si 1.86804 * 120.00047 * 336.98877 * 6 4 2 9 9 H 1.48500 * 109.47334 * 179.97438 * 8 6 4 10 10 H 1.48507 * 109.46876 * 300.00098 * 8 6 4 11 11 H 1.48494 * 109.46970 * 59.99576 * 8 6 4 12 12 C 1.50700 * 109.47089 * 240.00310 * 2 1 3 13 13 C 1.38281 * 119.92981 * 299.72590 * 12 2 1 14 14 C 1.38132 * 120.05930 * 179.72450 * 13 12 2 15 15 C 1.38834 * 119.93425 * 0.52790 * 14 13 12 16 16 N 1.40196 * 120.06455 * 179.77029 * 15 14 13 17 17 C 1.34726 * 126.84148 * 359.68501 * 16 15 14 18 18 N 1.30846 * 108.03300 * 179.89491 * 17 16 15 19 19 C 1.33270 * 109.83906 * 0.37893 * 18 17 16 20 20 N 1.30744 * 109.00259 * 359.76424 * 19 18 17 21 21 C 1.38836 * 119.86832 * 359.74394 * 15 14 13 22 22 C 1.38118 * 119.93073 * 0.02562 * 21 15 14 23 23 H 1.09004 * 109.46915 * 173.28650 * 1 2 3 24 24 H 1.08999 * 109.47196 * 293.28138 * 1 2 3 25 25 H 1.09002 * 109.47344 * 53.28347 * 1 2 3 26 26 H 0.96999 * 119.99818 * 354.92786 * 7 6 4 27 27 H 1.07988 * 119.96831 * 359.97438 * 13 12 2 28 28 H 1.07996 * 120.02576 * 180.29074 * 14 13 12 29 29 H 1.08001 * 125.98272 * 0.03691 * 17 16 15 30 30 H 1.08004 * 125.49341 * 179.74170 * 19 18 17 31 31 H 1.07994 * 120.03228 * 180.02562 * 21 15 14 32 32 H 1.08008 * 119.96253 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7979 -0.1755 2.4793 7 7 1.8101 -0.9525 3.5403 8 14 1.4627 1.6528 2.6645 9 1 1.2434 1.9733 4.0978 10 1 2.6265 2.4233 2.1570 11 1 0.2515 2.0154 1.8857 12 6 2.0323 -0.7103 -1.2305 13 6 1.7021 -2.0359 -1.4451 14 6 2.1563 -2.6879 -2.5749 15 6 2.9542 -2.0144 -3.4899 16 7 3.4208 -2.6749 -4.6351 17 6 3.1861 -3.9558 -4.9808 18 7 3.7934 -4.1865 -6.1166 19 6 4.4291 -3.0872 -6.5210 20 7 4.2308 -2.1350 -5.6474 21 6 3.2887 -0.6852 -3.2687 22 6 2.8276 -0.0371 -2.1396 23 1 -0.3633 -1.0207 -0.1201 24 1 -0.3633 0.4062 0.9440 25 1 -0.3634 0.6144 -0.8238 26 1 1.9107 -1.9118 3.4378 27 1 1.0851 -2.5605 -0.7308 28 1 1.8942 -3.7218 -2.7443 29 1 2.5977 -4.6668 -4.4199 30 1 5.0140 -2.9977 -7.4246 31 1 3.9089 -0.1585 -3.9789 32 1 3.0872 0.9970 -1.9673 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259969886.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:52 Heat of formation + Delta-G solvation = 95.443366 kcal Electronic energy + Delta-G solvation = -16382.687929 eV Core-core repulsion = 13730.343841 eV Total energy + Delta-G solvation = -2652.344088 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.31610 -40.44039 -36.80879 -34.77341 -33.10383 -32.66582 -31.75614 -29.50249 -26.73921 -25.17170 -24.45629 -22.89124 -22.15955 -21.20843 -19.44950 -19.37773 -16.94123 -16.86833 -16.60503 -15.90553 -15.56324 -15.24179 -15.10386 -14.67596 -14.44438 -14.17759 -13.95054 -13.54566 -13.32031 -13.08468 -12.39070 -12.22424 -11.99751 -11.69111 -11.60265 -11.56489 -11.18121 -11.01315 -10.96935 -10.35313 -9.99239 -9.22555 -8.63896 -6.29173 -0.23279 0.35955 1.03825 1.17217 1.51382 1.56403 1.75385 1.86602 2.53598 2.79708 3.06197 3.33844 3.43392 3.82181 3.94683 4.02983 4.11561 4.45976 4.47753 4.62303 4.67239 4.89030 4.92333 5.00532 5.05979 5.22129 5.34474 5.37498 5.42606 5.55932 5.69139 5.84182 6.04178 6.08506 6.16919 6.63637 6.94382 7.43721 8.66651 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.051465 B = 0.004991 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.923850 B = 5608.284825 C = 5800.096097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.042 3.958 3 H 0.035 0.965 4 C -0.596 4.596 5 H 0.023 0.977 6 C -0.011 4.011 7 N -0.934 5.934 8 Si 1.072 2.928 9 H -0.294 1.294 10 H -0.267 1.267 11 H -0.244 1.244 12 C -0.049 4.049 13 C -0.097 4.097 14 C -0.119 4.119 15 C 0.111 3.889 16 N -0.330 5.330 17 C 0.260 3.740 18 N -0.562 5.562 19 C 0.202 3.798 20 N -0.351 5.351 21 C -0.112 4.112 22 C -0.114 4.114 23 H 0.046 0.954 24 H 0.041 0.959 25 H 0.053 0.947 26 H 0.255 0.745 27 H 0.127 0.873 28 H 0.161 0.839 29 H 0.256 0.744 30 H 0.255 0.745 31 H 0.136 0.864 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.084 -1.748 -16.448 16.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.023 3.977 3 H 0.053 0.947 4 C -0.633 4.633 5 H 0.042 0.958 6 C -0.210 4.210 7 N -0.569 5.569 8 Si 0.894 3.106 9 H -0.220 1.220 10 H -0.192 1.192 11 H -0.169 1.169 12 C -0.049 4.049 13 C -0.115 4.115 14 C -0.139 4.139 15 C 0.020 3.980 16 N -0.113 5.113 17 C -0.034 4.034 18 N -0.289 5.289 19 C -0.100 4.100 20 N -0.177 5.177 21 C -0.132 4.132 22 C -0.132 4.132 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.145 0.855 28 H 0.179 0.821 29 H 0.272 0.728 30 H 0.270 0.730 31 H 0.154 0.846 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.121 -0.161 -15.600 15.601 hybrid contribution 0.443 -1.635 -0.428 1.748 sum 0.565 -1.796 -16.028 16.139 Atomic orbital electron populations 1.22072 0.96488 1.00754 1.00127 1.18160 0.93568 0.95472 0.90535 0.94714 1.22023 1.39565 1.09336 0.92390 0.95819 1.27005 0.92912 1.09076 0.92008 1.70976 1.47094 1.05750 1.33081 0.83698 0.79070 0.71615 0.76212 1.22007 1.19212 1.16858 1.20386 0.94901 0.94773 0.94887 1.20925 1.00036 0.94275 0.96300 1.20973 0.98362 1.01307 0.93304 1.17571 1.00969 0.93229 0.86275 1.47733 1.36737 1.10027 1.16812 1.26948 0.97209 0.86065 0.93186 1.70672 1.16493 1.29187 1.12514 1.26855 0.97753 0.85434 0.99955 1.78075 1.14748 1.24429 1.00446 1.20886 1.00999 0.92842 0.98426 1.21162 0.97809 1.01012 0.93266 0.93497 0.94010 0.92846 0.93628 0.85550 0.82108 0.72789 0.72979 0.84590 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.34 8.83 71.98 0.64 -4.71 16 2 C 0.04 1.79 2.07 -12.29 -0.03 1.77 16 3 H 0.03 1.46 6.45 -2.39 -0.02 1.45 16 4 C -0.60 -31.63 8.47 25.60 0.22 -31.42 16 5 H 0.02 1.39 7.76 -2.91 -0.02 1.37 16 6 C -0.01 -0.59 5.20 84.65 0.44 -0.15 16 7 N -0.93 -56.39 13.70 21.45 0.29 -56.09 16 8 Si 1.07 47.50 26.44 68.60 1.81 49.32 16 9 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 10 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 11 H -0.24 -9.54 6.14 99.48 0.61 -8.93 16 12 C -0.05 -1.83 4.75 -19.84 -0.09 -1.93 16 13 C -0.10 -3.29 8.55 22.25 0.19 -3.10 16 14 C -0.12 -3.26 9.47 22.39 0.21 -3.04 16 15 C 0.11 3.25 6.70 38.09 0.26 3.50 16 16 N -0.33 -8.92 3.82 -191.26 -0.73 -9.65 16 17 C 0.26 5.70 11.98 180.26 2.16 7.86 16 18 N -0.56 -13.36 11.19 -203.72 -2.28 -15.64 16 19 C 0.20 4.50 13.03 180.75 2.35 6.86 16 20 N -0.35 -9.68 12.06 -61.21 -0.74 -10.42 16 21 C -0.11 -3.43 9.68 22.38 0.22 -3.21 16 22 C -0.11 -3.78 9.66 22.25 0.21 -3.56 16 23 H 0.05 1.77 7.19 -2.39 -0.02 1.76 16 24 H 0.04 1.71 5.46 -2.39 -0.01 1.70 16 25 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.25 15.56 8.73 -92.71 -0.81 14.75 16 27 H 0.13 4.45 7.55 -2.92 -0.02 4.43 16 28 H 0.16 3.04 6.81 -2.91 -0.02 3.02 16 29 H 0.26 3.21 7.10 -2.91 -0.02 3.19 16 30 H 0.25 3.30 8.06 -2.91 -0.02 3.28 16 31 H 0.14 3.95 7.74 -2.91 -0.02 3.92 16 32 H 0.14 4.16 7.94 -2.91 -0.02 4.14 16 Total: -1.00 -66.95 274.88 6.13 -60.81 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 1.00 Total: 12.80 kcal Atomic # 6 Polarization: -37.91 SS G_CDS: 6.78 Total: -31.13 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -3.45 Total: -91.80 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 1.81 Total: 49.32 kcal Total: -66.95 6.13 -60.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259969886.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.256 kcal (2) G-P(sol) polarization free energy of solvation -66.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds