Wall clock time and date at job start Mon Mar 30 2020 05:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47267 * 2 1 4 4 C 1.50699 * 109.46697 * 239.99699 * 2 1 3 5 5 H 1.08008 * 120.00105 * 239.99624 * 4 2 1 6 6 C 1.37881 * 119.99955 * 60.00340 * 4 2 1 7 7 N 1.31508 * 119.99895 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99896 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47024 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.46867 * 119.99794 * 8 6 4 11 11 H 1.48493 * 109.47002 * 240.00046 * 8 6 4 12 12 C 1.50704 * 109.47200 * 120.00050 * 2 1 3 13 13 C 1.38275 * 119.93150 * 239.99984 * 12 2 1 14 14 C 1.38119 * 120.06843 * 180.02562 * 13 12 2 15 15 C 1.38834 * 119.93028 * 0.02562 * 14 13 12 16 16 N 1.40201 * 120.06708 * 179.97438 * 15 14 13 17 17 C 1.34719 * 126.84558 * 179.97438 * 16 15 14 18 18 N 1.30848 * 108.03769 * 179.97438 * 17 16 15 19 19 C 1.33260 * 109.84056 * 0.02562 * 18 17 16 20 20 N 1.30753 * 109.00330 * 359.97438 * 19 18 17 21 21 C 1.38832 * 119.86808 * 0.25086 * 15 14 13 22 22 C 1.38120 * 119.93127 * 359.49459 * 21 15 14 23 23 H 1.09001 * 109.46905 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46881 * 300.00099 * 1 2 3 25 25 H 1.08992 * 109.47161 * 60.00055 * 1 2 3 26 26 H 0.97005 * 119.99721 * 179.97438 * 7 6 4 27 27 H 1.08002 * 119.97036 * 0.03936 * 13 12 2 28 28 H 1.08001 * 120.03707 * 180.02562 * 14 13 12 29 29 H 1.08005 * 125.97969 * 0.02562 * 17 16 15 30 30 H 1.07997 * 125.50010 * 180.02562 * 19 18 17 31 31 H 1.08007 * 120.03341 * 179.73313 * 21 15 14 32 32 H 1.08001 * 119.96642 * 180.25540 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3223 -1.1197 -4.0080 9 1 3.1481 -2.2859 -3.6038 10 1 1.1675 -1.5868 -4.8164 11 1 3.1470 -0.1861 -4.8161 12 6 2.0324 -0.7104 1.2305 13 6 2.8273 -0.0371 2.1397 14 6 3.2897 -0.6856 3.2681 15 6 2.9560 -2.0151 3.4887 16 7 3.4243 -2.6763 4.6329 17 6 3.1858 -3.9557 4.9810 18 7 3.7988 -4.1885 6.1133 19 6 4.4348 -3.0895 6.5176 20 7 4.2356 -2.1368 5.6445 21 6 2.1625 -2.6901 2.5711 22 6 1.6988 -2.0347 1.4472 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 0.7087 1.1612 -3.4844 27 1 3.0867 0.9971 1.9676 28 1 3.9101 -0.1590 3.9782 29 1 2.5932 -4.6653 4.4226 30 1 5.0209 -3.0003 7.4203 31 1 1.9049 -3.7257 2.7378 32 1 1.0781 -2.5581 0.7351 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259969891.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:55 Heat of formation + Delta-G solvation = 111.000440 kcal Electronic energy + Delta-G solvation = -16344.228768 eV Core-core repulsion = 13692.559286 eV Total energy + Delta-G solvation = -2651.669482 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.24165 -39.02712 -35.16691 -33.20930 -31.54409 -30.97734 -30.43377 -27.83121 -25.23994 -23.86803 -23.19273 -21.61220 -20.97254 -19.78238 -18.20197 -16.36726 -15.76003 -15.61829 -15.33084 -14.63817 -14.23702 -14.06016 -13.58199 -13.15140 -12.89637 -12.52596 -12.17722 -11.95398 -11.51602 -11.09629 -11.00589 -10.77431 -10.53232 -10.23782 -10.18275 -10.10101 -9.88875 -9.59792 -9.08536 -8.64433 -8.48241 -7.73504 -6.11554 -4.19324 0.98052 1.72557 2.27582 2.29242 2.87451 3.22584 3.31508 3.35073 4.17827 4.21103 4.37060 4.53438 4.87533 5.11437 5.19700 5.29560 5.62847 5.76373 5.88920 5.94490 6.19290 6.32801 6.36180 6.62110 6.70847 6.75684 6.92931 6.95616 7.06235 7.15645 7.41176 7.60395 7.81382 7.97514 7.99228 8.25404 8.83369 9.46336 10.93968 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.043803 B = 0.004931 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.070436 B = 5676.676658 C = 5895.152483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.068 3.932 3 H 0.038 0.962 4 C -0.511 4.511 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 C -0.023 4.023 13 C -0.113 4.113 14 C -0.107 4.107 15 C 0.101 3.899 16 N -0.310 5.310 17 C 0.252 3.748 18 N -0.547 5.547 19 C 0.193 3.807 20 N -0.317 5.317 21 C -0.130 4.130 22 C -0.089 4.089 23 H 0.029 0.971 24 H 0.010 0.990 25 H 0.087 0.913 26 H 0.261 0.739 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.220 0.780 30 H 0.219 0.781 31 H 0.122 0.878 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.107 -5.806 11.032 12.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.050 3.950 3 H 0.056 0.944 4 C -0.549 4.549 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 C -0.023 4.023 13 C -0.131 4.131 14 C -0.127 4.127 15 C 0.010 3.990 16 N -0.093 5.093 17 C -0.043 4.043 18 N -0.274 5.274 19 C -0.110 4.110 20 N -0.144 5.144 21 C -0.151 4.151 22 C -0.107 4.107 23 H 0.049 0.951 24 H 0.029 0.971 25 H 0.106 0.894 26 H 0.071 0.929 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.236 0.764 30 H 0.235 0.765 31 H 0.140 0.860 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.327 -5.274 11.141 12.544 hybrid contribution 0.261 -0.552 -1.003 1.174 sum 2.588 -5.826 10.139 11.977 Atomic orbital electron populations 1.21800 0.97307 0.99434 1.00518 1.17971 0.93085 0.95654 0.88339 0.94395 1.21116 1.31496 1.12564 0.89718 0.92303 1.24953 0.94911 0.94946 0.99006 1.69886 1.36441 1.22781 1.23506 0.86516 0.78700 0.79753 0.82963 1.19722 1.20928 1.20960 1.20899 0.92040 0.93758 0.95630 1.21117 0.98300 1.00405 0.93301 1.20804 1.00902 0.92288 0.98683 1.17459 1.02190 0.93330 0.86049 1.47718 1.35479 1.09323 1.16787 1.26088 0.98253 0.86481 0.93498 1.70580 1.15802 1.28851 1.12158 1.26055 0.98920 0.86317 0.99659 1.78099 1.13635 1.23043 0.99660 1.20750 0.99720 0.99699 0.94948 1.20963 0.99471 0.94784 0.95526 0.95147 0.97127 0.89437 0.92864 0.85398 0.85417 0.76402 0.76521 0.85998 0.84594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.78 37.16 0.33 -2.64 16 2 C 0.07 1.57 2.48 -92.92 -0.23 1.34 16 3 H 0.04 0.95 7.87 -51.93 -0.41 0.54 16 4 C -0.51 -13.03 8.24 -34.44 -0.28 -13.31 16 5 H 0.06 1.50 7.60 -52.48 -0.40 1.10 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -24.02 11.32 55.43 0.63 -23.40 16 8 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C -0.02 -0.45 4.74 -104.59 -0.50 -0.94 16 13 C -0.11 -2.00 9.66 -39.61 -0.38 -2.38 16 14 C -0.11 -1.77 9.68 -39.40 -0.38 -2.15 16 15 C 0.10 1.61 6.70 -83.59 -0.56 1.05 16 16 N -0.31 -4.66 3.82 -11.81 -0.05 -4.71 16 17 C 0.25 3.21 11.98 -90.38 -1.08 2.13 16 18 N -0.55 -7.42 11.19 -15.75 -0.18 -7.60 16 19 C 0.19 2.46 13.03 -91.76 -1.20 1.27 16 20 N -0.32 -4.82 12.06 29.30 0.35 -4.47 16 21 C -0.13 -1.95 9.47 -39.40 -0.37 -2.32 16 22 C -0.09 -1.55 8.70 -39.61 -0.34 -1.90 16 23 H 0.03 0.63 7.39 -51.93 -0.38 0.25 16 24 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.09 2.18 6.07 -51.93 -0.32 1.86 16 26 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 27 H 0.13 2.12 7.94 -52.49 -0.42 1.71 16 28 H 0.13 2.01 7.74 -52.49 -0.41 1.60 16 29 H 0.22 1.87 7.10 -52.48 -0.37 1.50 16 30 H 0.22 1.83 8.06 -52.49 -0.42 1.41 16 31 H 0.12 1.38 6.81 -52.48 -0.36 1.02 16 32 H 0.14 2.34 7.57 -52.49 -0.40 1.94 16 LS Contribution 278.60 15.07 4.20 4.20 Total: -1.00 -29.08 278.60 -8.60 -37.68 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -3.44 Total: 1.30 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -5.10 Total: -18.30 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.76 Total: -40.16 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.08 -8.60 -37.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259969891.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.680 kcal (2) G-P(sol) polarization free energy of solvation -29.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds