Wall clock time and date at job start Mon Mar 30 2020 05:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47267 * 2 1 4 4 C 1.50699 * 109.46697 * 239.99699 * 2 1 3 5 5 H 1.08008 * 120.00105 * 239.99624 * 4 2 1 6 6 C 1.37881 * 119.99955 * 60.00340 * 4 2 1 7 7 N 1.31508 * 119.99895 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99896 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47024 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.46867 * 119.99794 * 8 6 4 11 11 H 1.48493 * 109.47002 * 240.00046 * 8 6 4 12 12 C 1.50704 * 109.47200 * 120.00050 * 2 1 3 13 13 C 1.38275 * 119.93150 * 239.99984 * 12 2 1 14 14 C 1.38119 * 120.06843 * 180.02562 * 13 12 2 15 15 C 1.38834 * 119.93028 * 0.02562 * 14 13 12 16 16 N 1.40201 * 120.06708 * 179.97438 * 15 14 13 17 17 C 1.34719 * 126.84558 * 179.97438 * 16 15 14 18 18 N 1.30848 * 108.03769 * 179.97438 * 17 16 15 19 19 C 1.33260 * 109.84056 * 0.02562 * 18 17 16 20 20 N 1.30753 * 109.00330 * 359.97438 * 19 18 17 21 21 C 1.38832 * 119.86808 * 0.25086 * 15 14 13 22 22 C 1.38120 * 119.93127 * 359.49459 * 21 15 14 23 23 H 1.09001 * 109.46905 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46881 * 300.00099 * 1 2 3 25 25 H 1.08992 * 109.47161 * 60.00055 * 1 2 3 26 26 H 0.97005 * 119.99721 * 179.97438 * 7 6 4 27 27 H 1.08002 * 119.97036 * 0.03936 * 13 12 2 28 28 H 1.08001 * 120.03707 * 180.02562 * 14 13 12 29 29 H 1.08005 * 125.97969 * 0.02562 * 17 16 15 30 30 H 1.07997 * 125.50010 * 180.02562 * 19 18 17 31 31 H 1.08007 * 120.03341 * 179.73313 * 21 15 14 32 32 H 1.08001 * 119.96642 * 180.25540 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3223 -1.1197 -4.0080 9 1 3.1481 -2.2859 -3.6038 10 1 1.1675 -1.5868 -4.8164 11 1 3.1470 -0.1861 -4.8161 12 6 2.0324 -0.7104 1.2305 13 6 2.8273 -0.0371 2.1397 14 6 3.2897 -0.6856 3.2681 15 6 2.9560 -2.0151 3.4887 16 7 3.4243 -2.6763 4.6329 17 6 3.1858 -3.9557 4.9810 18 7 3.7988 -4.1885 6.1133 19 6 4.4348 -3.0895 6.5176 20 7 4.2356 -2.1368 5.6445 21 6 2.1625 -2.6901 2.5711 22 6 1.6988 -2.0347 1.4472 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 0.7087 1.1612 -3.4844 27 1 3.0867 0.9971 1.9676 28 1 3.9101 -0.1590 3.9782 29 1 2.5932 -4.6653 4.4226 30 1 5.0209 -3.0003 7.4203 31 1 1.9049 -3.7257 2.7378 32 1 1.0781 -2.5581 0.7351 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259969891.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:55 Heat of formation + Delta-G solvation = 97.748205 kcal Electronic energy + Delta-G solvation = -16344.803428 eV Core-core repulsion = 13692.559286 eV Total energy + Delta-G solvation = -2652.244142 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.27227 -40.35510 -36.71568 -34.71773 -32.68360 -32.58890 -31.67584 -29.24192 -27.18722 -25.14957 -24.37980 -22.96391 -22.08116 -21.30831 -19.33364 -18.27425 -17.01258 -16.82368 -16.61960 -16.14899 -15.64357 -15.06695 -14.95956 -14.64414 -14.34057 -13.95494 -13.57055 -13.34988 -13.19034 -12.83358 -12.81071 -12.26383 -12.19737 -11.89416 -11.56919 -11.40158 -11.11211 -10.94116 -10.90766 -10.46199 -9.92991 -9.08051 -8.08579 -6.22470 -0.17079 0.42709 1.09506 1.22149 1.42244 1.45877 1.55657 1.90460 2.44123 2.88067 3.20213 3.38147 3.48261 3.87995 4.02855 4.08456 4.25720 4.53157 4.56956 4.71078 4.86325 5.03618 5.05036 5.12583 5.26313 5.38025 5.43279 5.47110 5.54187 5.68741 5.76534 6.05049 6.05737 6.16332 6.35642 6.86764 6.98503 7.45973 8.95818 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.043803 B = 0.004931 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.070436 B = 5676.676658 C = 5895.152483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.068 3.932 3 H 0.006 0.994 4 C -0.519 4.519 5 H 0.056 0.944 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.952 3.048 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.285 1.285 12 C -0.051 4.051 13 C -0.118 4.118 14 C -0.112 4.112 15 C 0.109 3.891 16 N -0.329 5.329 17 C 0.261 3.739 18 N -0.563 5.563 19 C 0.201 3.799 20 N -0.353 5.353 21 C -0.116 4.116 22 C -0.093 4.093 23 H 0.039 0.961 24 H 0.024 0.976 25 H 0.058 0.942 26 H 0.261 0.739 27 H 0.127 0.873 28 H 0.132 0.868 29 H 0.259 0.741 30 H 0.253 0.747 31 H 0.166 0.834 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.511 -8.119 12.255 14.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.050 3.950 3 H 0.025 0.975 4 C -0.557 4.557 5 H 0.074 0.926 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.778 3.222 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.211 1.211 12 C -0.052 4.052 13 C -0.137 4.137 14 C -0.132 4.132 15 C 0.018 3.982 16 N -0.112 5.112 17 C -0.033 4.033 18 N -0.290 5.290 19 C -0.101 4.101 20 N -0.180 5.180 21 C -0.136 4.136 22 C -0.112 4.112 23 H 0.058 0.942 24 H 0.043 0.957 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.145 0.855 28 H 0.150 0.850 29 H 0.275 0.725 30 H 0.269 0.731 31 H 0.183 0.817 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.739 -7.593 12.381 14.780 hybrid contribution 0.187 0.105 -1.215 1.234 sum 2.926 -7.488 11.166 13.759 Atomic orbital electron populations 1.21640 0.97016 0.99691 0.99732 1.17802 0.93422 0.94162 0.89648 0.97547 1.21410 1.31016 1.12384 0.90868 0.92614 1.25676 0.95250 0.95643 1.01716 1.70014 1.37597 1.24059 1.23940 0.85596 0.78172 0.78725 0.79716 1.19137 1.20511 1.21124 1.20608 0.94375 0.95022 0.95180 1.21086 0.98349 1.00561 0.93656 1.20827 1.01092 0.93048 0.98241 1.17568 1.01255 0.93037 0.86388 1.47728 1.36545 1.10130 1.16815 1.26980 0.97154 0.86024 0.93148 1.70664 1.16431 1.29140 1.12726 1.26827 0.97863 0.85462 0.99934 1.78088 1.14880 1.24475 1.00518 1.21019 0.98069 1.01359 0.93162 1.20981 0.99719 0.93900 0.96596 0.94239 0.95688 0.92294 0.92967 0.85511 0.85002 0.72533 0.73111 0.81657 0.84543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 8.78 71.98 0.63 -4.97 16 2 C 0.07 3.23 2.48 -12.29 -0.03 3.20 16 3 H 0.01 0.33 7.87 -2.39 -0.02 0.32 16 4 C -0.52 -26.83 8.24 25.60 0.21 -26.62 16 5 H 0.06 2.85 7.60 -2.91 -0.02 2.83 16 6 C 0.02 0.84 5.30 84.66 0.45 1.29 16 7 N -0.92 -50.84 11.32 21.45 0.24 -50.60 16 8 Si 0.95 41.87 29.54 68.60 2.03 43.90 16 9 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 11 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 12 C -0.05 -2.02 4.74 -19.85 -0.09 -2.11 16 13 C -0.12 -4.23 9.66 22.25 0.21 -4.01 16 14 C -0.11 -3.62 9.68 22.38 0.22 -3.40 16 15 C 0.11 3.22 6.70 38.09 0.26 3.48 16 16 N -0.33 -8.95 3.82 -191.26 -0.73 -9.68 16 17 C 0.26 5.64 11.98 180.26 2.16 7.80 16 18 N -0.56 -13.36 11.19 -203.73 -2.28 -15.64 16 19 C 0.20 4.55 13.03 180.75 2.35 6.91 16 20 N -0.35 -9.94 12.06 -61.21 -0.74 -10.68 16 21 C -0.12 -3.09 9.47 22.38 0.21 -2.88 16 22 C -0.09 -3.12 8.70 22.25 0.19 -2.93 16 23 H 0.04 1.66 7.39 -2.39 -0.02 1.64 16 24 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.06 3.01 6.07 -2.39 -0.01 3.00 16 26 H 0.26 13.81 8.31 -92.70 -0.77 13.04 16 27 H 0.13 4.40 7.94 -2.91 -0.02 4.37 16 28 H 0.13 4.08 7.74 -2.91 -0.02 4.06 16 29 H 0.26 3.03 7.10 -2.91 -0.02 3.01 16 30 H 0.25 3.40 8.06 -2.91 -0.02 3.37 16 31 H 0.17 2.88 6.81 -2.91 -0.02 2.86 16 32 H 0.14 4.50 7.57 -2.91 -0.02 4.47 16 Total: -1.00 -63.22 278.60 6.42 -56.80 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 1.13 Total: 10.14 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 6.77 Total: -24.24 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -3.51 Total: -86.60 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -63.22 6.42 -56.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259969891.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.546 kcal (2) G-P(sol) polarization free energy of solvation -63.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds