Wall clock time and date at job start Mon Mar 30 2020 05:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00285 * 2 1 4 4 H 1.48500 * 109.47539 * 274.91656 * 3 2 1 5 5 H 1.48504 * 109.46738 * 34.91727 * 3 2 1 6 6 H 1.48497 * 109.47245 * 154.91298 * 3 2 1 7 7 C 1.37883 * 119.99701 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99923 * 4.74716 * 7 2 1 9 9 C 1.50701 * 119.99705 * 184.74759 * 7 2 1 10 10 H 1.09006 * 110.65577 * 57.83222 * 9 7 2 11 11 C 1.54599 * 110.74240 * 294.63550 * 9 7 2 12 12 N 1.47914 * 102.62525 * 267.04236 * 11 9 7 13 13 C 1.46901 * 111.00018 * 94.57954 * 12 11 9 14 14 C 1.53773 * 113.61606 * 272.63687 * 13 12 11 15 15 C 1.53781 * 87.07872 * 220.01847 * 14 13 12 16 16 C 1.53773 * 87.08218 * 25.43466 * 15 14 13 17 17 C 1.40041 * 107.88725 * 332.75920 * 12 11 9 18 18 C 1.39408 * 129.94665 * 198.01373 * 17 12 11 19 19 C 1.37912 * 120.19493 * 180.40559 * 18 17 12 20 20 C 1.38304 * 120.26823 * 0.08630 * 19 18 17 21 21 C 1.38304 * 119.87916 * 0.16954 * 20 19 18 22 22 C 1.37916 * 120.07982 * 359.38246 * 21 20 19 23 23 H 0.96998 * 119.99864 * 359.97438 * 1 2 3 24 24 H 1.08996 * 110.77710 * 148.76192 * 11 9 7 25 25 H 1.08993 * 110.94050 * 25.39922 * 11 9 7 26 26 H 1.09006 * 112.84266 * 43.94352 * 13 12 11 27 27 H 1.09002 * 113.61577 * 334.56612 * 14 13 12 28 28 H 1.08996 * 113.61819 * 105.47101 * 14 13 12 29 29 H 1.09003 * 113.61230 * 270.88195 * 15 14 13 30 30 H 1.09001 * 113.61120 * 139.98208 * 15 14 13 31 31 H 1.09008 * 113.61267 * 220.02035 * 16 15 14 32 32 H 1.09001 * 113.61726 * 89.11672 * 16 15 14 33 33 H 1.08002 * 119.90199 * 0.42350 * 18 17 12 34 34 H 1.08006 * 119.86306 * 180.11423 * 19 18 17 35 35 H 1.07994 * 120.05942 * 179.88412 * 20 19 18 36 36 H 1.08000 * 119.95570 * 179.66596 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3929 2.1064 -1.3949 5 1 1.5024 2.6203 0.8014 6 1 3.5948 1.4123 0.5936 7 6 2.0045 -1.1941 -0.0005 8 1 1.4672 -2.1277 -0.0784 9 6 3.5076 -1.1964 0.1075 10 1 3.8285 -0.6906 1.0182 11 6 4.1471 -0.5402 -1.1377 12 7 4.3936 -1.6990 -2.0233 13 6 3.2836 -1.8857 -2.9672 14 6 2.1435 -2.7562 -2.4131 15 6 2.0544 -3.3909 -3.8110 16 6 3.5306 -3.0021 -3.9955 17 6 4.5606 -2.8302 -1.2149 18 6 5.1313 -4.0668 -1.5126 19 6 5.1845 -5.0554 -0.5525 20 6 4.6708 -4.8281 0.7113 21 6 4.0984 -3.6058 1.0128 22 6 4.0510 -2.6106 0.0591 23 1 -0.4850 0.8400 0.0004 24 1 5.0833 -0.0468 -0.8769 25 1 3.4578 0.1635 -1.6045 26 1 2.9440 -0.9500 -3.4115 27 1 2.4629 -3.4520 -1.6372 28 1 1.2562 -2.1880 -2.1342 29 1 1.3772 -2.8672 -4.4859 30 1 1.8855 -4.4676 -3.7917 31 1 3.7632 -2.6322 -4.9942 32 1 4.2293 -3.7651 -3.6523 33 1 5.5331 -4.2511 -2.4980 34 1 5.6294 -6.0109 -0.7885 35 1 4.7126 -5.6053 1.4600 36 1 3.6920 -3.4288 1.9977 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260001124.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:17 Heat of formation + Delta-G solvation = 71.780713 kcal Electronic energy + Delta-G solvation = -18296.223991 eV Core-core repulsion = 15746.394157 eV Total energy + Delta-G solvation = -2549.829834 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.73247 -37.37309 -35.49666 -32.76994 -31.01562 -28.85755 -28.51405 -25.12537 -24.90262 -23.24680 -22.31440 -20.66511 -19.92178 -18.65134 -16.93147 -16.07426 -15.28449 -15.02557 -14.82830 -14.60175 -13.89879 -13.10496 -13.02810 -12.89260 -12.45224 -12.02298 -11.87818 -11.71113 -11.56052 -11.33579 -11.10394 -10.75236 -10.69870 -10.23124 -10.02687 -9.90690 -9.73070 -9.54680 -9.32503 -8.71388 -8.52827 -8.10349 -7.11983 -6.17392 -4.15160 1.94902 2.04790 3.17794 3.30067 3.31386 4.28563 4.30959 4.49572 5.08589 5.20621 5.32027 5.40546 5.45325 5.50196 5.59560 5.72517 5.87250 5.99148 6.11872 6.14077 6.15995 6.23838 6.32730 6.35266 6.43924 6.53425 6.67162 6.74959 6.94066 6.95023 7.06035 7.14652 7.17208 7.32819 7.41745 7.59672 7.71320 8.00680 8.41401 8.86611 9.42782 10.94243 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.022238 B = 0.011314 C = 0.009361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.823165 B = 2474.191348 C = 2990.446551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.074 3.926 3 Si 0.866 3.134 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.260 1.260 7 C -0.499 4.499 8 H 0.082 0.918 9 C 0.023 3.977 10 H 0.047 0.953 11 C 0.040 3.960 12 N -0.483 5.483 13 C 0.077 3.923 14 C -0.146 4.146 15 C -0.150 4.150 16 C -0.139 4.139 17 C 0.098 3.902 18 C -0.123 4.123 19 C -0.126 4.126 20 C -0.141 4.141 21 C -0.097 4.097 22 C -0.086 4.086 23 H 0.265 0.735 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.740 -5.884 -3.836 10.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.128 4.128 3 Si 0.694 3.306 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.185 1.185 7 C -0.536 4.536 8 H 0.100 0.900 9 C 0.003 3.997 10 H 0.064 0.936 11 C -0.087 4.087 12 N -0.200 5.200 13 C -0.029 4.029 14 C -0.185 4.185 15 C -0.188 4.188 16 C -0.177 4.177 17 C 0.002 3.998 18 C -0.143 4.143 19 C -0.144 4.144 20 C -0.160 4.160 21 C -0.115 4.115 22 C -0.088 4.088 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.115 0.885 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.012 -5.611 -4.192 10.642 hybrid contribution -0.340 0.907 0.399 1.048 sum 7.672 -4.704 -3.793 9.766 Atomic orbital electron populations 1.69883 1.06094 1.26967 1.50072 1.24926 0.94634 0.98647 0.94580 0.87096 0.80842 0.84282 0.78348 1.20290 1.21678 1.18467 1.20784 0.87366 0.94881 1.50611 0.89989 1.19462 0.97308 0.88123 0.94790 0.93556 1.23570 0.98753 0.92220 0.94173 1.60296 1.40229 1.02100 1.17327 1.23155 0.89350 0.97574 0.92857 1.23612 1.00899 0.98946 0.95024 1.22806 0.96353 1.00139 0.99461 1.23245 0.97048 0.98899 0.98508 1.19464 0.96466 0.91454 0.92457 1.20417 1.02512 0.92077 0.99308 1.20691 1.01764 0.98356 0.93606 1.20903 1.01425 0.96939 0.96727 1.20412 0.99425 0.92552 0.99140 1.21318 0.95229 0.97684 0.94609 0.92542 0.92013 0.90628 0.88489 0.89805 0.89256 0.90898 0.92232 0.92218 0.89771 0.86781 0.86754 0.86813 0.86644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.96 55.43 0.77 -25.03 16 2 C 0.07 2.01 5.43 -17.82 -0.10 1.91 16 3 Si 0.87 20.45 24.74 -169.99 -4.21 16.25 16 4 H -0.28 -6.41 7.10 56.52 0.40 -6.01 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.26 -5.87 6.25 56.52 0.35 -5.51 16 7 C -0.50 -13.02 6.51 -34.44 -0.22 -13.24 16 8 H 0.08 2.36 6.76 -52.49 -0.35 2.00 16 9 C 0.02 0.53 2.33 -91.65 -0.21 0.31 16 10 H 0.05 1.09 7.30 -51.93 -0.38 0.71 16 11 C 0.04 0.86 5.07 -2.43 -0.01 0.84 16 12 N -0.48 -9.73 5.20 -160.58 -0.84 -10.56 16 13 C 0.08 1.47 3.73 -66.90 -0.25 1.22 16 14 C -0.15 -2.95 4.76 -25.92 -0.12 -3.08 16 15 C -0.15 -2.46 8.08 -25.92 -0.21 -2.67 16 16 C -0.14 -2.24 7.61 -25.92 -0.20 -2.43 16 17 C 0.10 1.92 3.67 -83.40 -0.31 1.62 16 18 C -0.12 -2.10 8.77 -39.27 -0.34 -2.45 16 19 C -0.13 -1.94 10.02 -39.68 -0.40 -2.34 16 20 C -0.14 -2.28 10.06 -39.53 -0.40 -2.68 16 21 C -0.10 -1.82 10.03 -39.67 -0.40 -2.22 16 22 C -0.09 -1.81 4.62 -104.04 -0.48 -2.29 16 23 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.08 1.69 4.62 -51.93 -0.24 1.45 16 26 H 0.10 1.88 7.83 -51.93 -0.41 1.48 16 27 H 0.08 1.82 5.59 -51.93 -0.29 1.53 16 28 H 0.09 2.10 6.80 -51.93 -0.35 1.75 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 32 H 0.08 1.33 5.07 -51.93 -0.26 1.07 16 33 H 0.11 1.74 6.65 -52.49 -0.35 1.39 16 34 H 0.11 1.42 8.06 -52.48 -0.42 0.99 16 35 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 36 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 270.74 15.07 4.08 4.08 Total: -1.00 -27.72 270.74 -8.62 -36.34 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -4.78 Total: 6.43 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: -3.65 Total: -27.49 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: -0.06 Total: -35.59 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.21 Total: 16.25 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.72 -8.62 -36.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260001124.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.116 kcal (2) G-P(sol) polarization free energy of solvation -27.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds