Wall clock time and date at job start Mon Mar 30 2020 05:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00285 * 2 1 4 4 H 1.48500 * 109.47539 * 274.91656 * 3 2 1 5 5 H 1.48504 * 109.46738 * 34.91727 * 3 2 1 6 6 H 1.48497 * 109.47245 * 154.91298 * 3 2 1 7 7 C 1.37883 * 119.99701 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99923 * 4.74716 * 7 2 1 9 9 C 1.50701 * 119.99705 * 184.74759 * 7 2 1 10 10 H 1.09006 * 110.65577 * 57.83222 * 9 7 2 11 11 C 1.54599 * 110.74240 * 294.63550 * 9 7 2 12 12 N 1.47914 * 102.62525 * 267.04236 * 11 9 7 13 13 C 1.46901 * 111.00018 * 94.57954 * 12 11 9 14 14 C 1.53773 * 113.61606 * 272.63687 * 13 12 11 15 15 C 1.53781 * 87.07872 * 220.01847 * 14 13 12 16 16 C 1.53773 * 87.08218 * 25.43466 * 15 14 13 17 17 C 1.40041 * 107.88725 * 332.75920 * 12 11 9 18 18 C 1.39408 * 129.94665 * 198.01373 * 17 12 11 19 19 C 1.37912 * 120.19493 * 180.40559 * 18 17 12 20 20 C 1.38304 * 120.26823 * 0.08630 * 19 18 17 21 21 C 1.38304 * 119.87916 * 0.16954 * 20 19 18 22 22 C 1.37916 * 120.07982 * 359.38246 * 21 20 19 23 23 H 0.96998 * 119.99864 * 359.97438 * 1 2 3 24 24 H 1.08996 * 110.77710 * 148.76192 * 11 9 7 25 25 H 1.08993 * 110.94050 * 25.39922 * 11 9 7 26 26 H 1.09006 * 112.84266 * 43.94352 * 13 12 11 27 27 H 1.09002 * 113.61577 * 334.56612 * 14 13 12 28 28 H 1.08996 * 113.61819 * 105.47101 * 14 13 12 29 29 H 1.09003 * 113.61230 * 270.88195 * 15 14 13 30 30 H 1.09001 * 113.61120 * 139.98208 * 15 14 13 31 31 H 1.09008 * 113.61267 * 220.02035 * 16 15 14 32 32 H 1.09001 * 113.61726 * 89.11672 * 16 15 14 33 33 H 1.08002 * 119.90199 * 0.42350 * 18 17 12 34 34 H 1.08006 * 119.86306 * 180.11423 * 19 18 17 35 35 H 1.07994 * 120.05942 * 179.88412 * 20 19 18 36 36 H 1.08000 * 119.95570 * 179.66596 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3929 2.1064 -1.3949 5 1 1.5024 2.6203 0.8014 6 1 3.5948 1.4123 0.5936 7 6 2.0045 -1.1941 -0.0005 8 1 1.4672 -2.1277 -0.0784 9 6 3.5076 -1.1964 0.1075 10 1 3.8285 -0.6906 1.0182 11 6 4.1471 -0.5402 -1.1377 12 7 4.3936 -1.6990 -2.0233 13 6 3.2836 -1.8857 -2.9672 14 6 2.1435 -2.7562 -2.4131 15 6 2.0544 -3.3909 -3.8110 16 6 3.5306 -3.0021 -3.9955 17 6 4.5606 -2.8302 -1.2149 18 6 5.1313 -4.0668 -1.5126 19 6 5.1845 -5.0554 -0.5525 20 6 4.6708 -4.8281 0.7113 21 6 4.0984 -3.6058 1.0128 22 6 4.0510 -2.6106 0.0591 23 1 -0.4850 0.8400 0.0004 24 1 5.0833 -0.0468 -0.8769 25 1 3.4578 0.1635 -1.6045 26 1 2.9440 -0.9500 -3.4115 27 1 2.4629 -3.4520 -1.6372 28 1 1.2562 -2.1880 -2.1342 29 1 1.3772 -2.8672 -4.4859 30 1 1.8855 -4.4676 -3.7917 31 1 3.7632 -2.6322 -4.9942 32 1 4.2293 -3.7651 -3.6523 33 1 5.5331 -4.2511 -2.4980 34 1 5.6294 -6.0109 -0.7885 35 1 4.7126 -5.6053 1.4600 36 1 3.6920 -3.4288 1.9977 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260001124.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:17 Heat of formation + Delta-G solvation = 55.139002 kcal Electronic energy + Delta-G solvation = -18296.945629 eV Core-core repulsion = 15746.394157 eV Total energy + Delta-G solvation = -2550.551472 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.24691 -38.78337 -37.02408 -34.73305 -32.64176 -30.30927 -30.12359 -26.86634 -26.40193 -24.84167 -23.83643 -22.08151 -21.57650 -20.11822 -18.88913 -17.61983 -16.80908 -16.47181 -16.45060 -16.25300 -15.48710 -14.86903 -14.54217 -14.50748 -13.86423 -13.65884 -13.47288 -13.28081 -13.02923 -12.89667 -12.77543 -12.53413 -12.18468 -11.82831 -11.77109 -11.40509 -11.30969 -11.30044 -11.01690 -10.74610 -10.06842 -9.53812 -8.64763 -8.29242 -6.29364 0.56447 0.64966 1.26872 1.33065 1.41480 2.30186 2.81874 2.99932 3.08749 3.78516 3.88010 3.96689 4.00804 4.15044 4.23131 4.28617 4.35910 4.46176 4.62654 4.70789 4.74345 4.82246 4.88238 4.90556 4.99173 5.08705 5.22058 5.25957 5.31273 5.43789 5.49890 5.57088 5.65376 5.73799 5.83674 6.00039 6.17037 6.27748 6.55390 6.71223 7.30937 8.85938 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.022238 B = 0.011314 C = 0.009361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.823165 B = 2474.191348 C = 2990.446551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.021 3.979 3 Si 0.923 3.077 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.243 1.243 7 C -0.482 4.482 8 H 0.041 0.959 9 C 0.018 3.982 10 H 0.036 0.964 11 C 0.042 3.958 12 N -0.478 5.478 13 C 0.065 3.935 14 C -0.149 4.149 15 C -0.137 4.137 16 C -0.117 4.117 17 C 0.083 3.917 18 C -0.122 4.122 19 C -0.112 4.112 20 C -0.134 4.134 21 C -0.116 4.116 22 C -0.123 4.123 23 H 0.264 0.736 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.039 0.961 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.139 0.861 34 H 0.158 0.842 35 H 0.148 0.852 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.457 -7.596 -5.188 13.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.176 4.176 3 Si 0.748 3.252 4 H -0.193 1.193 5 H -0.221 1.221 6 H -0.166 1.166 7 C -0.519 4.519 8 H 0.059 0.941 9 C -0.002 4.002 10 H 0.054 0.946 11 C -0.085 4.085 12 N -0.194 5.194 13 C -0.041 4.041 14 C -0.188 4.188 15 C -0.175 4.175 16 C -0.155 4.155 17 C -0.013 4.013 18 C -0.141 4.141 19 C -0.130 4.130 20 C -0.153 4.153 21 C -0.134 4.134 22 C -0.125 4.125 23 H 0.073 0.927 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.157 0.843 34 H 0.176 0.824 35 H 0.165 0.835 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.755 -7.339 -5.544 14.152 hybrid contribution -1.211 1.273 0.890 1.970 sum 9.544 -6.066 -4.655 12.229 Atomic orbital electron populations 1.70026 1.07869 1.27698 1.52568 1.25652 0.95227 1.02115 0.94643 0.86168 0.80260 0.79954 0.78777 1.19297 1.22062 1.16616 1.20801 0.89261 0.93090 1.48797 0.94115 1.19365 0.95099 0.90576 0.95138 0.94650 1.23443 0.98797 0.92797 0.93499 1.60429 1.40093 1.01935 1.16965 1.23308 0.88958 0.98114 0.93740 1.23420 0.99396 0.99080 0.96884 1.22775 0.97312 1.00947 0.96434 1.23122 0.96527 0.97249 0.98585 1.19640 0.97533 0.92442 0.91677 1.20780 1.01468 0.90956 1.00912 1.21208 0.99856 0.99480 0.92491 1.21291 0.99686 0.96195 0.98084 1.20621 1.00344 0.93629 0.98833 1.21266 0.97599 0.97165 0.96464 0.92684 0.90517 0.91972 0.89433 0.91531 0.94245 0.90003 0.90593 0.89645 0.88789 0.84291 0.82395 0.83474 0.87174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.49 13.96 21.45 0.30 -57.19 16 2 C 0.02 1.19 5.43 84.66 0.46 1.65 16 3 Si 0.92 43.39 24.74 68.60 1.70 45.09 16 4 H -0.27 -12.08 7.10 99.48 0.71 -11.37 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.24 -10.61 6.25 99.48 0.62 -9.99 16 7 C -0.48 -26.55 6.51 25.60 0.17 -26.39 16 8 H 0.04 2.53 6.76 -2.91 -0.02 2.51 16 9 C 0.02 0.85 2.33 -11.46 -0.03 0.82 16 10 H 0.04 1.72 7.30 -2.38 -0.02 1.70 16 11 C 0.04 1.81 5.07 86.65 0.44 2.25 16 12 N -0.48 -18.79 5.20 -661.95 -3.44 -22.23 16 13 C 0.07 2.46 3.73 45.44 0.17 2.63 16 14 C -0.15 -6.16 4.76 31.12 0.15 -6.01 16 15 C -0.14 -4.27 8.08 31.12 0.25 -4.02 16 16 C -0.12 -3.40 7.61 31.12 0.24 -3.17 16 17 C 0.08 3.15 3.67 38.28 0.14 3.29 16 18 C -0.12 -3.70 8.77 22.47 0.20 -3.51 16 19 C -0.11 -2.95 10.02 22.21 0.22 -2.73 16 20 C -0.13 -3.90 10.06 22.30 0.22 -3.68 16 21 C -0.12 -4.32 10.03 22.21 0.22 -4.09 16 22 C -0.12 -5.20 4.62 -19.49 -0.09 -5.29 16 23 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 24 H 0.08 3.03 8.14 -2.39 -0.02 3.02 16 25 H 0.06 2.81 4.62 -2.39 -0.01 2.80 16 26 H 0.09 3.42 7.83 -2.38 -0.02 3.40 16 27 H 0.07 2.97 5.59 -2.39 -0.01 2.96 16 28 H 0.04 1.98 6.80 -2.39 -0.02 1.96 16 29 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 32 H 0.09 2.56 5.07 -2.39 -0.01 2.55 16 33 H 0.14 3.53 6.65 -2.91 -0.02 3.51 16 34 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 35 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 36 H 0.11 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -63.85 270.74 2.31 -61.55 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.99 Total: 21.02 kcal Atomic # 6 Polarization: -51.00 SS G_CDS: 2.76 Total: -48.24 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -3.14 Total: -79.42 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.70 Total: 45.09 kcal Total: -63.85 2.31 -61.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260001124.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.686 kcal (2) G-P(sol) polarization free energy of solvation -63.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds