Wall clock time and date at job start Mon Mar 30 2020 05:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99828 * 2 1 4 4 H 1.48496 * 109.47332 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47148 * 30.00472 * 3 2 1 6 6 H 1.48499 * 109.46897 * 150.00237 * 3 2 1 7 7 C 1.37879 * 120.00404 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00050 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99815 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.66375 * 56.79659 * 9 7 2 11 11 C 1.54604 * 110.74638 * 180.02562 * 9 7 2 12 12 N 1.47902 * 102.63180 * 144.11281 * 11 9 7 13 13 C 1.46902 * 110.99973 * 94.67894 * 12 11 9 14 14 C 1.53778 * 113.61136 * 174.99541 * 13 12 11 15 15 C 1.53787 * 87.08035 * 140.06699 * 14 13 12 16 16 C 1.53778 * 113.69128 * 272.53356 * 13 12 11 17 17 C 1.40033 * 107.91277 * 332.84206 * 12 11 9 18 18 C 1.39405 * 129.94807 * 198.02750 * 17 12 11 19 19 C 1.37909 * 120.20319 * 180.30964 * 18 17 12 20 20 C 1.38308 * 120.26374 * 0.02772 * 19 18 17 21 21 C 1.38304 * 119.88290 * 359.85304 * 20 19 18 22 22 C 1.37921 * 120.07732 * 0.02562 * 21 20 19 23 23 H 0.96996 * 120.00010 * 359.97438 * 1 2 3 24 24 H 1.08998 * 110.77232 * 25.82738 * 11 9 7 25 25 H 1.08994 * 110.93810 * 262.47224 * 11 9 7 26 26 H 1.09004 * 112.84421 * 43.80368 * 13 12 11 27 27 H 1.08998 * 113.61879 * 25.52181 * 14 13 12 28 28 H 1.08999 * 113.61887 * 254.61288 * 14 13 12 29 29 H 1.09004 * 113.61202 * 89.11582 * 15 14 13 30 30 H 1.08994 * 113.61447 * 220.02014 * 15 14 13 31 31 H 1.08993 * 113.61229 * 105.46235 * 16 13 12 32 32 H 1.09000 * 113.61263 * 334.55885 * 16 13 12 33 33 H 1.07998 * 119.89895 * 0.30485 * 18 17 12 34 34 H 1.07997 * 119.87113 * 180.02562 * 19 18 17 35 35 H 1.07999 * 120.06041 * 179.87375 * 20 19 18 36 36 H 1.07996 * 119.96055 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.5749 -2.5528 -0.8537 11 6 2.2295 -3.6963 -0.0005 12 7 1.5288 -4.6866 0.8455 13 6 0.7434 -5.6181 0.0248 14 6 0.0868 -6.7489 0.8342 15 6 -1.1482 -6.5684 -0.0643 16 6 -0.6784 -5.1208 -0.2850 17 6 0.7061 -3.9865 1.7365 18 6 0.1147 -4.4064 2.9271 19 6 -0.6747 -3.5394 3.6531 20 6 -0.8858 -2.2479 3.2054 21 6 -0.3006 -1.8230 2.0265 22 6 0.4918 -2.6854 1.2980 23 1 -0.4850 0.8400 0.0004 24 1 3.1844 -3.4151 0.4435 25 1 2.3727 -4.0823 -1.0097 26 1 1.2850 -5.9679 -0.8541 27 1 -0.0916 -6.4919 1.8783 28 1 0.5775 -7.7146 0.7129 29 1 -1.1238 -7.1779 -0.9676 30 1 -2.0936 -6.6435 0.4729 31 1 -0.8053 -4.7721 -1.3099 32 1 -1.0659 -4.4186 0.4531 33 1 0.2752 -5.4137 3.2819 34 1 -1.1299 -3.8702 4.5749 35 1 -1.5062 -1.5723 3.7755 36 1 -0.4642 -0.8147 1.6759 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260001128.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:20 Heat of formation + Delta-G solvation = 67.992187 kcal Electronic energy + Delta-G solvation = -18036.653938 eV Core-core repulsion = 15486.659821 eV Total energy + Delta-G solvation = -2549.994117 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.53128 -37.34316 -35.22624 -33.13913 -30.19114 -28.58727 -28.19278 -25.32533 -24.84118 -23.51252 -21.88426 -20.49833 -19.79301 -18.68690 -16.59416 -16.07791 -15.32468 -14.76541 -14.68739 -14.32904 -13.99017 -13.07404 -12.85604 -12.52594 -12.21825 -12.14649 -11.89972 -11.61414 -11.34007 -11.18593 -10.94552 -10.86660 -10.56974 -10.42771 -10.19475 -9.98046 -9.77271 -9.60975 -9.21645 -8.48346 -8.39575 -7.62067 -6.90338 -6.14600 -4.19164 2.31708 2.50844 3.23799 3.31195 3.34967 4.31403 4.46896 4.81029 5.00440 5.05566 5.13970 5.21091 5.37374 5.72501 5.82424 5.92204 5.94813 6.02153 6.07972 6.16302 6.21956 6.36636 6.38969 6.41421 6.48281 6.64057 6.71294 6.75611 6.92029 7.19592 7.32527 7.43690 7.65425 7.71482 7.74068 7.85654 8.11316 8.22824 8.29705 8.82009 9.43100 10.91029 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.027691 B = 0.008891 C = 0.007690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.912198 B = 3148.508694 C = 3640.189187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.061 3.939 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.500 4.500 8 H 0.062 0.938 9 C 0.053 3.947 10 H 0.047 0.953 11 C 0.052 3.948 12 N -0.489 5.489 13 C 0.067 3.933 14 C -0.136 4.136 15 C -0.141 4.141 16 C -0.168 4.168 17 C 0.064 3.936 18 C -0.131 4.131 19 C -0.137 4.137 20 C -0.155 4.155 21 C -0.084 4.084 22 C -0.064 4.064 23 H 0.263 0.737 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.873 -8.507 1.691 8.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.538 4.538 8 H 0.080 0.920 9 C 0.034 3.966 10 H 0.065 0.935 11 C -0.074 4.074 12 N -0.205 5.205 13 C -0.040 4.040 14 C -0.174 4.174 15 C -0.179 4.179 16 C -0.207 4.207 17 C -0.031 4.031 18 C -0.151 4.151 19 C -0.155 4.155 20 C -0.174 4.174 21 C -0.102 4.102 22 C -0.067 4.067 23 H 0.073 0.927 24 H 0.096 0.904 25 H 0.081 0.919 26 H 0.115 0.885 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.591 -8.728 1.919 9.077 hybrid contribution -0.136 1.320 -0.323 1.366 sum -1.727 -7.408 1.596 7.772 Atomic orbital electron populations 1.69786 1.05855 1.26631 1.50063 1.24980 0.94960 0.99262 0.94687 0.86529 0.79961 0.83044 0.78180 1.20582 1.21045 1.19817 1.21070 0.92948 0.89716 1.50091 0.92013 1.18939 0.92627 0.93543 0.91484 0.93494 1.23245 0.98268 0.91030 0.94893 1.60325 1.25775 1.18457 1.15981 1.23255 0.91677 0.93654 0.95379 1.23195 0.96178 0.97986 1.00063 1.22703 0.97978 0.97573 0.99650 1.23651 0.97905 0.96677 1.02473 1.19518 0.95841 0.93603 0.94148 1.20226 1.01227 0.99074 0.94589 1.20633 1.00796 0.94573 0.99537 1.21152 1.02391 0.95734 0.98085 1.21917 0.93570 1.02887 0.91833 1.21600 0.94922 0.92540 0.97602 0.92734 0.90415 0.91851 0.88454 0.89264 0.91944 0.90777 0.91800 0.91959 0.88789 0.87662 0.87605 0.87650 0.81818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.72 9.84 55.43 0.55 -23.17 16 2 C 0.06 1.62 5.05 -17.82 -0.09 1.53 16 3 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.50 -13.23 8.51 -34.44 -0.29 -13.52 16 8 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 9 C 0.05 1.30 2.44 -91.65 -0.22 1.08 16 10 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 11 C 0.05 1.09 6.52 -2.43 -0.02 1.08 16 12 N -0.49 -9.73 5.20 -160.58 -0.83 -10.56 16 13 C 0.07 1.15 3.78 -66.90 -0.25 0.89 16 14 C -0.14 -2.01 7.61 -25.92 -0.20 -2.21 16 15 C -0.14 -1.98 8.08 -25.91 -0.21 -2.19 16 16 C -0.17 -2.92 6.75 -25.92 -0.18 -3.10 16 17 C 0.06 1.37 3.67 -83.41 -0.31 1.06 16 18 C -0.13 -2.53 8.78 -39.27 -0.34 -2.88 16 19 C -0.14 -2.54 10.02 -39.68 -0.40 -2.94 16 20 C -0.15 -3.16 10.06 -39.53 -0.40 -3.55 16 21 C -0.08 -1.99 9.20 -39.67 -0.36 -2.36 16 22 C -0.06 -1.53 4.63 -104.03 -0.48 -2.01 16 23 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 24 H 0.08 1.67 7.79 -51.93 -0.40 1.27 16 25 H 0.06 1.20 7.58 -51.93 -0.39 0.81 16 26 H 0.10 1.52 7.82 -51.93 -0.41 1.11 16 27 H 0.09 1.39 5.07 -51.93 -0.26 1.13 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.09 1.91 5.74 -51.93 -0.30 1.61 16 33 H 0.11 1.81 6.65 -52.49 -0.35 1.46 16 34 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.11 1.89 8.06 -52.49 -0.42 1.46 16 36 H 0.17 4.23 4.85 -52.49 -0.25 3.97 16 LS Contribution 279.26 15.07 4.21 4.21 Total: -1.00 -26.93 279.26 -9.72 -36.64 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -4.86 Total: 6.46 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: -3.75 Total: -29.12 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: -0.29 Total: -33.74 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -26.93 -9.72 -36.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260001128.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.635 kcal (2) G-P(sol) polarization free energy of solvation -26.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds