Wall clock time and date at job start Mon Mar 30 2020 05:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99828 * 2 1 4 4 H 1.48496 * 109.47332 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47148 * 30.00472 * 3 2 1 6 6 H 1.48499 * 109.46897 * 150.00237 * 3 2 1 7 7 C 1.37879 * 120.00404 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00050 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99815 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.66375 * 56.79659 * 9 7 2 11 11 C 1.54604 * 110.74638 * 180.02562 * 9 7 2 12 12 N 1.47902 * 102.63180 * 144.11281 * 11 9 7 13 13 C 1.46902 * 110.99973 * 94.67894 * 12 11 9 14 14 C 1.53778 * 113.61136 * 174.99541 * 13 12 11 15 15 C 1.53787 * 87.08035 * 140.06699 * 14 13 12 16 16 C 1.53778 * 113.69128 * 272.53356 * 13 12 11 17 17 C 1.40033 * 107.91277 * 332.84206 * 12 11 9 18 18 C 1.39405 * 129.94807 * 198.02750 * 17 12 11 19 19 C 1.37909 * 120.20319 * 180.30964 * 18 17 12 20 20 C 1.38308 * 120.26374 * 0.02772 * 19 18 17 21 21 C 1.38304 * 119.88290 * 359.85304 * 20 19 18 22 22 C 1.37921 * 120.07732 * 0.02562 * 21 20 19 23 23 H 0.96996 * 120.00010 * 359.97438 * 1 2 3 24 24 H 1.08998 * 110.77232 * 25.82738 * 11 9 7 25 25 H 1.08994 * 110.93810 * 262.47224 * 11 9 7 26 26 H 1.09004 * 112.84421 * 43.80368 * 13 12 11 27 27 H 1.08998 * 113.61879 * 25.52181 * 14 13 12 28 28 H 1.08999 * 113.61887 * 254.61288 * 14 13 12 29 29 H 1.09004 * 113.61202 * 89.11582 * 15 14 13 30 30 H 1.08994 * 113.61447 * 220.02014 * 15 14 13 31 31 H 1.08993 * 113.61229 * 105.46235 * 16 13 12 32 32 H 1.09000 * 113.61263 * 334.55885 * 16 13 12 33 33 H 1.07998 * 119.89895 * 0.30485 * 18 17 12 34 34 H 1.07997 * 119.87113 * 180.02562 * 19 18 17 35 35 H 1.07999 * 120.06041 * 179.87375 * 20 19 18 36 36 H 1.07996 * 119.96055 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.5749 -2.5528 -0.8537 11 6 2.2295 -3.6963 -0.0005 12 7 1.5288 -4.6866 0.8455 13 6 0.7434 -5.6181 0.0248 14 6 0.0868 -6.7489 0.8342 15 6 -1.1482 -6.5684 -0.0643 16 6 -0.6784 -5.1208 -0.2850 17 6 0.7061 -3.9865 1.7365 18 6 0.1147 -4.4064 2.9271 19 6 -0.6747 -3.5394 3.6531 20 6 -0.8858 -2.2479 3.2054 21 6 -0.3006 -1.8230 2.0265 22 6 0.4918 -2.6854 1.2980 23 1 -0.4850 0.8400 0.0004 24 1 3.1844 -3.4151 0.4435 25 1 2.3727 -4.0823 -1.0097 26 1 1.2850 -5.9679 -0.8541 27 1 -0.0916 -6.4919 1.8783 28 1 0.5775 -7.7146 0.7129 29 1 -1.1238 -7.1779 -0.9676 30 1 -2.0936 -6.6435 0.4729 31 1 -0.8053 -4.7721 -1.3099 32 1 -1.0659 -4.4186 0.4531 33 1 0.2752 -5.4137 3.2819 34 1 -1.1299 -3.8702 4.5749 35 1 -1.5062 -1.5723 3.7755 36 1 -0.4642 -0.8147 1.6759 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260001128.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:20 Heat of formation + Delta-G solvation = 53.990528 kcal Electronic energy + Delta-G solvation = -18037.261095 eV Core-core repulsion = 15486.659821 eV Total energy + Delta-G solvation = -2550.601274 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.06632 -38.76794 -36.81736 -35.02807 -31.93888 -30.19680 -29.90294 -26.82382 -26.35775 -25.02509 -23.54831 -22.02461 -21.51577 -20.04993 -18.54914 -17.58243 -16.73178 -16.60486 -16.25759 -15.89796 -15.61831 -14.72367 -14.46545 -13.98559 -13.85362 -13.74893 -13.42298 -13.21902 -12.88842 -12.79279 -12.68567 -12.46368 -12.34052 -11.94565 -11.75187 -11.45620 -11.28376 -11.18654 -10.95014 -10.48221 -10.00170 -9.29421 -8.52793 -8.15338 -6.26256 0.70032 0.87942 1.38748 1.40559 1.49920 2.38887 2.92715 3.05731 3.21994 3.76317 3.81181 3.96417 4.07328 4.28276 4.33924 4.42509 4.43805 4.61342 4.67931 4.80498 4.82466 4.90670 4.94424 5.03766 5.06829 5.11653 5.15197 5.29965 5.44735 5.54548 5.61647 5.73839 5.77657 5.96056 6.10629 6.12380 6.24698 6.42959 6.65700 6.81780 7.37792 8.89065 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.027691 B = 0.008891 C = 0.007690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.912198 B = 3148.508694 C = 3640.189187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.020 3.980 3 Si 0.954 3.046 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.052 3.948 10 H 0.010 0.990 11 C 0.059 3.941 12 N -0.486 5.486 13 C 0.057 3.943 14 C -0.125 4.125 15 C -0.123 4.123 16 C -0.177 4.177 17 C 0.064 3.936 18 C -0.130 4.130 19 C -0.123 4.123 20 C -0.160 4.160 21 C -0.117 4.117 22 C -0.098 4.098 23 H 0.263 0.737 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.113 0.887 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.135 0.865 34 H 0.149 0.851 35 H 0.127 0.873 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.937 -10.545 2.927 11.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.780 3.220 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.563 4.563 8 H 0.075 0.925 9 C 0.033 3.967 10 H 0.028 0.972 11 C -0.068 4.068 12 N -0.202 5.202 13 C -0.050 4.050 14 C -0.163 4.163 15 C -0.161 4.161 16 C -0.216 4.216 17 C -0.032 4.032 18 C -0.149 4.149 19 C -0.141 4.141 20 C -0.178 4.178 21 C -0.135 4.135 22 C -0.101 4.101 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.098 0.902 26 H 0.131 0.869 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.153 0.847 34 H 0.167 0.833 35 H 0.145 0.855 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.660 -10.780 3.151 11.353 hybrid contribution -0.165 1.941 -0.711 2.074 sum -1.825 -8.839 2.440 9.350 Atomic orbital electron populations 1.69940 1.06924 1.27121 1.50197 1.25669 0.95714 1.02123 0.94392 0.85614 0.78714 0.79435 0.78263 1.19989 1.20704 1.19682 1.21357 0.92925 0.91236 1.50760 0.92542 1.18815 0.92725 0.94237 0.90966 0.97205 1.23111 0.97217 0.90424 0.96062 1.60404 1.26003 1.17813 1.16016 1.23555 0.91152 0.93915 0.96356 1.23127 0.95880 0.97950 0.99320 1.22680 0.98136 0.94702 1.00572 1.23586 0.98982 0.98366 1.00701 1.19705 0.95778 0.92681 0.94988 1.20606 1.00287 1.00527 0.93505 1.21075 0.99393 0.93271 1.00406 1.21373 1.02162 0.97246 0.97024 1.21835 0.95537 1.02191 0.93970 1.21555 0.96458 0.94308 0.97739 0.92827 0.91210 0.90235 0.86933 0.89869 0.89305 0.88384 0.90969 0.93265 0.92042 0.84714 0.83314 0.85502 0.84533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.70 9.84 21.45 0.21 -50.49 16 2 C 0.02 1.07 5.05 84.65 0.43 1.50 16 3 Si 0.95 43.32 29.54 68.60 2.03 45.35 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.52 -28.97 8.51 25.60 0.22 -28.75 16 8 H 0.06 3.07 7.62 -2.91 -0.02 3.05 16 9 C 0.05 2.65 2.44 -11.46 -0.03 2.63 16 10 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 11 C 0.06 2.51 6.52 86.66 0.56 3.08 16 12 N -0.49 -18.98 5.20 -661.96 -3.44 -22.42 16 13 C 0.06 1.83 3.78 45.44 0.17 2.00 16 14 C -0.13 -3.25 7.61 31.12 0.24 -3.01 16 15 C -0.12 -3.09 8.08 31.12 0.25 -2.84 16 16 C -0.18 -6.09 6.75 31.12 0.21 -5.88 16 17 C 0.06 2.69 3.67 38.29 0.14 2.83 16 18 C -0.13 -4.67 8.78 22.47 0.20 -4.48 16 19 C -0.12 -4.22 10.02 22.21 0.22 -4.00 16 20 C -0.16 -6.37 10.06 22.30 0.22 -6.14 16 21 C -0.12 -5.74 9.20 22.21 0.20 -5.53 16 22 C -0.10 -4.82 4.63 -19.48 -0.09 -4.91 16 23 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 24 H 0.07 3.06 7.79 -2.39 -0.02 3.04 16 25 H 0.08 3.06 7.58 -2.39 -0.02 3.04 16 26 H 0.11 3.28 7.82 -2.38 -0.02 3.26 16 27 H 0.08 2.28 5.07 -2.39 -0.01 2.26 16 28 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 2.54 5.74 -2.39 -0.01 2.52 16 33 H 0.14 4.06 6.65 -2.91 -0.02 4.04 16 34 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 35 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 36 H 0.14 7.44 4.85 -2.91 -0.01 7.42 16 Total: -1.00 -60.70 279.26 2.82 -57.88 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 1.07 Total: 23.19 kcal Atomic # 6 Polarization: -56.47 SS G_CDS: 2.95 Total: -53.52 kcal Atomic # 7 Polarization: -69.68 SS G_CDS: -3.23 Total: -72.91 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -60.70 2.82 -57.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260001128.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.874 kcal (2) G-P(sol) polarization free energy of solvation -60.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds