Wall clock time and date at job start Mon Mar 30 2020 06:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37959 * 120.07600 * 2 1 4 4 C 1.38342 * 120.15007 * 179.75133 * 3 2 1 5 5 C 1.50703 * 119.85111 * 180.25250 * 4 3 2 6 6 C 1.38386 * 120.30638 * 0.23405 * 4 3 2 7 7 C 1.50701 * 119.92817 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.46780 * 59.20861 * 7 6 4 9 9 C 1.52994 * 109.47119 * 179.21166 * 7 6 4 10 10 C 1.50703 * 109.47065 * 299.21162 * 7 6 4 11 11 H 1.08003 * 119.99712 * 0.20092 * 10 7 6 12 12 C 1.37871 * 119.99802 * 180.19246 * 10 7 6 13 13 N 1.31514 * 120.00292 * 0.02562 * 12 10 7 14 14 Si 1.86802 * 119.99746 * 179.97438 * 12 10 7 15 15 H 1.48495 * 109.47289 * 90.00467 * 14 12 10 16 16 H 1.48509 * 109.46936 * 210.00225 * 14 12 10 17 17 H 1.48496 * 109.47227 * 330.00023 * 14 12 10 18 18 C 1.37930 * 120.14877 * 0.02562 * 6 4 3 19 19 C 1.39613 * 120.07306 * 180.25705 * 2 1 3 20 20 C 1.43193 * 120.15628 * 359.97438 * 19 2 1 21 21 N 3.48505 * 80.49299 * 180.25500 * 2 1 3 22 22 H 1.08994 * 109.47239 * 89.99714 * 1 2 3 23 23 H 1.08998 * 109.46758 * 210.00206 * 1 2 3 24 24 H 1.09008 * 109.46711 * 329.99290 * 1 2 3 25 25 H 1.08006 * 119.92960 * 0.02910 * 3 2 1 26 26 H 1.08998 * 109.46962 * 89.36547 * 5 4 3 27 27 H 1.08997 * 109.47667 * 209.37366 * 5 4 3 28 28 H 1.09001 * 109.47076 * 329.37272 * 5 4 3 29 29 H 1.08999 * 109.47440 * 50.98879 * 8 7 6 30 30 H 1.09005 * 109.46856 * 170.98592 * 8 7 6 31 31 H 1.09005 * 109.47609 * 290.98950 * 8 7 6 32 32 H 1.08997 * 109.47571 * 59.99777 * 9 7 6 33 33 H 1.09006 * 109.46803 * 180.02562 * 9 7 6 34 34 H 1.09003 * 109.47180 * 299.99737 * 9 7 6 35 35 H 0.97000 * 120.00210 * 179.97438 * 13 12 10 36 36 H 1.07999 * 120.07389 * 179.97438 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1938 0.0000 4 6 3.5819 1.1956 0.0052 5 6 4.3303 2.5037 0.0109 6 6 4.2817 0.0018 0.0055 7 6 5.7887 0.0137 0.0106 8 6 6.2886 0.7541 1.2527 9 6 6.3100 -1.4245 0.0298 10 6 6.2897 0.7132 -1.2267 11 1 5.5870 1.1123 -1.9432 12 6 7.6449 0.8437 -1.4437 13 7 8.5005 0.3574 -0.5713 14 14 8.2659 1.7101 -2.9777 15 1 8.4230 3.1600 -2.6981 16 1 9.5779 1.1372 -3.3729 17 1 7.2908 1.5216 -4.0817 18 6 3.6032 -1.1990 0.0002 19 6 2.2067 -1.2082 -0.0054 20 6 1.4957 -2.4511 -0.0104 21 7 0.9314 -3.4372 -0.0153 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5140 25 1 1.6585 2.1293 0.0005 26 1 4.4969 2.8224 1.0399 27 1 5.2899 2.3755 -0.4898 28 1 3.7451 3.2594 -0.5131 29 1 5.8000 0.3485 2.1387 30 1 7.3674 0.6263 1.3422 31 1 6.0545 1.8149 1.1623 32 1 5.9538 -1.9520 -0.8550 33 1 7.4000 -1.4159 0.0339 34 1 5.9476 -1.9305 0.9248 35 1 9.4540 0.4489 -0.7242 36 1 4.1506 -2.1300 0.0000 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260001962.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:10 Heat of formation + Delta-G solvation = 39.207426 kcal Electronic energy + Delta-G solvation = -17411.464634 eV Core-core repulsion = 14860.222316 eV Total energy + Delta-G solvation = -2551.242317 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.66900 -36.68434 -35.42169 -32.62558 -32.04912 -30.40332 -27.42097 -26.27499 -25.47333 -25.25002 -22.14602 -20.98527 -19.59961 -17.40823 -16.05904 -15.30175 -14.88397 -14.54727 -14.11124 -13.66866 -13.22600 -13.09674 -12.92783 -12.74379 -12.59682 -12.44416 -12.24756 -11.75664 -11.50180 -11.21765 -11.00622 -10.91764 -10.84174 -10.68780 -10.54311 -10.45454 -10.21922 -9.59963 -9.37710 -8.92163 -8.42575 -8.27697 -7.74715 -6.07909 -4.16390 1.27020 1.89934 2.96254 3.23202 3.31844 3.33591 3.37824 4.26367 4.30625 4.39918 5.08005 5.13810 5.17560 5.50131 5.65410 5.68464 5.85255 5.95234 6.01315 6.20382 6.24890 6.40429 6.52835 6.66087 6.68745 6.77966 6.84484 6.91103 7.03144 7.06338 7.28141 7.35380 7.49371 7.57507 7.67112 7.79303 7.97667 8.09704 8.32370 8.81632 9.46609 10.93083 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.028148 B = 0.007264 C = 0.006689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.495227 B = 3853.466156 C = 4185.248132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.060 4.060 3 C -0.132 4.132 4 C -0.035 4.035 5 C -0.142 4.142 6 C -0.038 4.038 7 C 0.098 3.902 8 C -0.135 4.135 9 C -0.137 4.137 10 C -0.503 4.503 11 H 0.061 0.939 12 C 0.068 3.932 13 N -0.881 5.881 14 Si 0.888 3.112 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.074 4.074 19 C -0.057 4.057 20 C 0.273 3.727 21 N -0.449 5.449 22 H 0.070 0.930 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.122 0.878 26 H 0.064 0.936 27 H 0.125 0.875 28 H 0.047 0.953 29 H 0.008 0.992 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.029 0.971 33 H 0.088 0.912 34 H 0.012 0.988 35 H 0.261 0.739 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.010 3.375 1.927 8.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.063 4.063 3 C -0.150 4.150 4 C -0.036 4.036 5 C -0.198 4.198 6 C -0.038 4.038 7 C 0.098 3.902 8 C -0.192 4.192 9 C -0.195 4.195 10 C -0.540 4.540 11 H 0.079 0.921 12 C -0.134 4.134 13 N -0.518 5.518 14 Si 0.716 3.284 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.095 4.095 19 C -0.060 4.060 20 C -0.041 4.041 21 N -0.125 5.125 22 H 0.088 0.912 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.140 0.860 26 H 0.082 0.918 27 H 0.142 0.858 28 H 0.066 0.934 29 H 0.027 0.973 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.106 0.894 34 H 0.031 0.969 35 H 0.071 0.929 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.683 1.820 1.950 9.084 hybrid contribution 0.530 0.733 -0.865 1.251 sum -8.153 2.553 1.085 8.612 Atomic orbital electron populations 1.20791 0.91542 1.02468 1.02269 1.19624 0.95193 0.91715 0.99768 1.20769 0.93836 0.96568 1.03856 1.20059 0.92567 0.96264 0.94717 1.21503 1.03906 0.92281 1.02117 1.20477 0.98727 0.90630 0.94008 1.17244 0.83765 0.93980 0.95260 1.22007 1.03226 0.99245 0.94759 1.21943 1.04708 0.96300 0.96536 1.20957 0.91420 1.36481 1.05188 0.92054 1.24900 0.96852 0.95374 0.96252 1.69831 1.02109 1.44983 1.34920 0.86642 0.78376 0.79789 0.83570 1.20571 1.21243 1.19872 1.21292 0.90865 0.99639 0.97658 1.15893 0.92485 0.85980 1.11679 1.25868 0.92661 0.92809 0.92731 1.81164 1.09601 1.11164 1.10604 0.91181 0.92220 0.91189 0.86043 0.91757 0.85755 0.93402 0.97317 0.90112 0.93546 0.95171 0.89360 0.96891 0.92867 0.85087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.61 36.01 0.35 -1.00 16 2 C -0.06 -0.90 5.91 -104.21 -0.62 -1.51 16 3 C -0.13 -1.99 9.34 -39.65 -0.37 -2.36 16 4 C -0.04 -0.62 5.59 -104.53 -0.58 -1.20 16 5 C -0.14 -2.38 7.94 36.01 0.29 -2.10 16 6 C -0.04 -0.75 4.69 -104.68 -0.49 -1.24 16 7 C 0.10 2.13 0.48 -156.81 -0.08 2.06 16 8 C -0.13 -2.89 7.73 37.16 0.29 -2.60 16 9 C -0.14 -3.02 6.89 37.15 0.26 -2.77 16 10 C -0.50 -11.99 5.48 -34.44 -0.19 -12.18 16 11 H 0.06 1.48 7.15 -52.48 -0.38 1.11 16 12 C 0.07 1.68 5.15 -17.82 -0.09 1.59 16 13 N -0.88 -22.30 9.47 55.43 0.52 -21.77 16 14 Si 0.89 19.52 29.54 -169.99 -5.02 14.50 16 15 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 C -0.07 -1.35 8.68 -39.17 -0.34 -1.69 16 19 C -0.06 -0.94 5.73 -106.93 -0.61 -1.56 16 20 C 0.27 4.59 13.80 -22.47 -0.31 4.28 16 21 N -0.45 -8.02 18.54 41.84 0.78 -7.25 16 22 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.06 0.73 7.10 -51.93 -0.37 0.36 16 24 H 0.07 0.69 8.09 -51.92 -0.42 0.27 16 25 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 26 H 0.06 1.01 7.26 -51.93 -0.38 0.63 16 27 H 0.12 2.44 3.97 -51.93 -0.21 2.24 16 28 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 29 H 0.01 0.16 8.12 -51.93 -0.42 -0.26 16 30 H 0.08 1.90 6.36 -51.93 -0.33 1.57 16 31 H 0.05 0.94 4.76 -51.93 -0.25 0.69 16 32 H 0.03 0.64 7.47 -51.93 -0.39 0.26 16 33 H 0.09 2.14 6.05 -51.93 -0.31 1.83 16 34 H 0.01 0.25 7.55 -51.93 -0.39 -0.14 16 35 H 0.26 6.43 8.31 -40.82 -0.34 6.09 16 36 H 0.13 2.36 5.88 -52.49 -0.31 2.05 16 LS Contribution 288.25 15.07 4.34 4.34 Total: -1.00 -25.00 288.25 -6.43 -31.43 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -4.55 Total: 1.03 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -2.51 Total: -22.29 kcal Atomic # 7 Polarization: -30.32 SS G_CDS: 1.30 Total: -29.02 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -25.00 -6.43 -31.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260001962.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.642 kcal (2) G-P(sol) polarization free energy of solvation -25.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds