Wall clock time and date at job start Mon Mar 30 2020 06:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37959 * 120.07600 * 2 1 4 4 C 1.38342 * 120.15007 * 179.75133 * 3 2 1 5 5 C 1.50703 * 119.85111 * 180.25250 * 4 3 2 6 6 C 1.38386 * 120.30638 * 0.23405 * 4 3 2 7 7 C 1.50701 * 119.92817 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.46780 * 59.20861 * 7 6 4 9 9 C 1.52994 * 109.47119 * 179.21166 * 7 6 4 10 10 C 1.50703 * 109.47065 * 299.21162 * 7 6 4 11 11 H 1.08003 * 119.99712 * 0.20092 * 10 7 6 12 12 C 1.37871 * 119.99802 * 180.19246 * 10 7 6 13 13 N 1.31514 * 120.00292 * 0.02562 * 12 10 7 14 14 Si 1.86802 * 119.99746 * 179.97438 * 12 10 7 15 15 H 1.48495 * 109.47289 * 90.00467 * 14 12 10 16 16 H 1.48509 * 109.46936 * 210.00225 * 14 12 10 17 17 H 1.48496 * 109.47227 * 330.00023 * 14 12 10 18 18 C 1.37930 * 120.14877 * 0.02562 * 6 4 3 19 19 C 1.39613 * 120.07306 * 180.25705 * 2 1 3 20 20 C 1.43193 * 120.15628 * 359.97438 * 19 2 1 21 21 N 3.48505 * 80.49299 * 180.25500 * 2 1 3 22 22 H 1.08994 * 109.47239 * 89.99714 * 1 2 3 23 23 H 1.08998 * 109.46758 * 210.00206 * 1 2 3 24 24 H 1.09008 * 109.46711 * 329.99290 * 1 2 3 25 25 H 1.08006 * 119.92960 * 0.02910 * 3 2 1 26 26 H 1.08998 * 109.46962 * 89.36547 * 5 4 3 27 27 H 1.08997 * 109.47667 * 209.37366 * 5 4 3 28 28 H 1.09001 * 109.47076 * 329.37272 * 5 4 3 29 29 H 1.08999 * 109.47440 * 50.98879 * 8 7 6 30 30 H 1.09005 * 109.46856 * 170.98592 * 8 7 6 31 31 H 1.09005 * 109.47609 * 290.98950 * 8 7 6 32 32 H 1.08997 * 109.47571 * 59.99777 * 9 7 6 33 33 H 1.09006 * 109.46803 * 180.02562 * 9 7 6 34 34 H 1.09003 * 109.47180 * 299.99737 * 9 7 6 35 35 H 0.97000 * 120.00210 * 179.97438 * 13 12 10 36 36 H 1.07999 * 120.07389 * 179.97438 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1938 0.0000 4 6 3.5819 1.1956 0.0052 5 6 4.3303 2.5037 0.0109 6 6 4.2817 0.0018 0.0055 7 6 5.7887 0.0137 0.0106 8 6 6.2886 0.7541 1.2527 9 6 6.3100 -1.4245 0.0298 10 6 6.2897 0.7132 -1.2267 11 1 5.5870 1.1123 -1.9432 12 6 7.6449 0.8437 -1.4437 13 7 8.5005 0.3574 -0.5713 14 14 8.2659 1.7101 -2.9777 15 1 8.4230 3.1600 -2.6981 16 1 9.5779 1.1372 -3.3729 17 1 7.2908 1.5216 -4.0817 18 6 3.6032 -1.1990 0.0002 19 6 2.2067 -1.2082 -0.0054 20 6 1.4957 -2.4511 -0.0104 21 7 0.9314 -3.4372 -0.0153 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5140 25 1 1.6585 2.1293 0.0005 26 1 4.4969 2.8224 1.0399 27 1 5.2899 2.3755 -0.4898 28 1 3.7451 3.2594 -0.5131 29 1 5.8000 0.3485 2.1387 30 1 7.3674 0.6263 1.3422 31 1 6.0545 1.8149 1.1623 32 1 5.9538 -1.9520 -0.8550 33 1 7.4000 -1.4159 0.0339 34 1 5.9476 -1.9305 0.9248 35 1 9.4540 0.4489 -0.7242 36 1 4.1506 -2.1300 0.0000 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260001962.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:09 Heat of formation + Delta-G solvation = 29.173104 kcal Electronic energy + Delta-G solvation = -17411.899754 eV Core-core repulsion = 14860.222316 eV Total energy + Delta-G solvation = -2551.677438 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.02487 -38.13360 -36.89010 -34.12188 -33.48712 -31.88796 -28.80838 -27.50857 -27.16079 -27.03734 -23.55845 -22.27448 -21.11524 -18.94913 -17.72873 -16.68770 -16.57831 -15.91819 -15.36058 -15.06878 -14.75150 -14.60033 -14.25176 -14.03451 -13.86578 -13.83348 -13.51239 -13.21211 -13.04035 -12.72595 -12.60382 -12.50989 -12.33821 -12.26405 -12.14313 -12.01739 -11.86833 -11.29047 -10.99556 -10.64689 -10.27022 -9.56459 -9.12303 -7.93537 -6.05439 -0.04514 0.61221 1.47056 1.51917 1.57926 1.62681 2.02249 2.51310 2.97187 3.02872 3.29663 3.94775 3.99275 4.23337 4.43886 4.58160 4.76979 4.79339 4.82896 4.91807 4.95638 5.01460 5.07598 5.12171 5.18311 5.20907 5.38394 5.48735 5.55151 5.56888 5.66658 5.75687 5.79301 5.94786 6.13183 6.27127 6.34062 6.46460 6.52553 6.96696 7.58394 9.05476 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.028148 B = 0.007264 C = 0.006689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.495227 B = 3853.466156 C = 4185.248132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.047 4.047 3 C -0.123 4.123 4 C -0.043 4.043 5 C -0.139 4.139 6 C -0.066 4.066 7 C 0.093 3.907 8 C -0.126 4.126 9 C -0.130 4.130 10 C -0.499 4.499 11 H 0.055 0.945 12 C 0.027 3.973 13 N -0.903 5.903 14 Si 0.937 3.063 15 H -0.274 1.274 16 H -0.293 1.293 17 H -0.275 1.275 18 C -0.083 4.083 19 C -0.064 4.064 20 C 0.287 3.713 21 N -0.469 5.469 22 H 0.083 0.917 23 H 0.054 0.946 24 H 0.098 0.902 25 H 0.159 0.841 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.017 0.983 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.024 0.976 33 H 0.062 0.938 34 H 0.025 0.975 35 H 0.257 0.743 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.383 4.766 1.833 11.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.050 4.050 3 C -0.141 4.141 4 C -0.044 4.044 5 C -0.195 4.195 6 C -0.066 4.066 7 C 0.093 3.907 8 C -0.183 4.183 9 C -0.187 4.187 10 C -0.537 4.537 11 H 0.073 0.927 12 C -0.172 4.172 13 N -0.542 5.542 14 Si 0.764 3.236 15 H -0.200 1.200 16 H -0.219 1.219 17 H -0.200 1.200 18 C -0.104 4.104 19 C -0.067 4.067 20 C -0.027 4.027 21 N -0.146 5.146 22 H 0.102 0.898 23 H 0.073 0.927 24 H 0.116 0.884 25 H 0.176 0.824 26 H 0.092 0.908 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.067 0.933 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.063 3.214 1.854 11.668 hybrid contribution 1.190 0.302 -0.822 1.478 sum -9.873 3.516 1.031 10.531 Atomic orbital electron populations 1.20880 0.88921 1.03693 1.03472 1.20024 0.96995 0.90810 0.97126 1.21080 0.92722 0.98092 1.02180 1.20231 0.93884 0.95647 0.94594 1.21396 1.02656 0.92807 1.02653 1.20264 0.97297 0.92070 0.96951 1.17178 0.85891 0.93106 0.94501 1.21876 1.01409 0.99859 0.95184 1.21825 1.02875 0.97141 0.96874 1.21151 0.91227 1.35693 1.05653 0.92663 1.25445 0.97283 0.96298 0.98177 1.69961 1.01920 1.46263 1.36095 0.85885 0.77375 0.79148 0.81188 1.20016 1.21938 1.19972 1.21205 0.91762 0.99000 0.98385 1.15929 0.91816 0.86649 1.12316 1.25844 0.92149 0.92572 0.92096 1.81178 1.10409 1.11570 1.11424 0.89837 0.92671 0.88359 0.82387 0.90839 0.88882 0.90726 0.96376 0.92806 0.92765 0.95698 0.91954 0.95621 0.93319 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.17 9.61 71.24 0.68 -1.49 16 2 C -0.05 -1.23 5.91 -19.60 -0.12 -1.34 16 3 C -0.12 -3.20 9.34 22.23 0.21 -2.99 16 4 C -0.04 -1.40 5.59 -19.80 -0.11 -1.51 16 5 C -0.14 -4.34 7.94 71.24 0.57 -3.78 16 6 C -0.07 -2.51 4.69 -19.90 -0.09 -2.60 16 7 C 0.09 4.11 0.48 -53.68 -0.03 4.09 16 8 C -0.13 -5.43 7.73 71.98 0.56 -4.87 16 9 C -0.13 -5.85 6.89 71.98 0.50 -5.35 16 10 C -0.50 -24.01 5.48 25.60 0.14 -23.87 16 11 H 0.06 2.67 7.15 -2.91 -0.02 2.65 16 12 C 0.03 1.36 5.15 84.65 0.44 1.80 16 13 N -0.90 -46.99 9.47 21.45 0.20 -46.78 16 14 Si 0.94 40.41 29.54 68.60 2.03 42.43 16 15 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 16 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 C -0.08 -2.97 8.68 22.54 0.20 -2.77 16 19 C -0.06 -1.98 5.73 -21.36 -0.12 -2.11 16 20 C 0.29 9.20 13.80 88.33 1.22 10.41 16 21 N -0.47 -16.16 18.54 19.00 0.35 -15.80 16 22 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.05 1.14 7.10 -2.39 -0.02 1.13 16 24 H 0.10 1.38 8.09 -2.38 -0.02 1.36 16 25 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 26 H 0.07 2.13 7.26 -2.39 -0.02 2.11 16 27 H 0.09 3.56 3.97 -2.39 -0.01 3.56 16 28 H 0.07 1.89 8.09 -2.39 -0.02 1.87 16 29 H 0.02 0.70 8.12 -2.39 -0.02 0.68 16 30 H 0.05 2.60 6.36 -2.38 -0.02 2.58 16 31 H 0.05 2.19 4.76 -2.38 -0.01 2.18 16 32 H 0.02 1.09 7.47 -2.39 -0.02 1.07 16 33 H 0.06 3.13 6.05 -2.38 -0.01 3.12 16 34 H 0.02 1.04 7.55 -2.39 -0.02 1.02 16 35 H 0.26 13.04 8.31 -92.71 -0.77 12.27 16 36 H 0.12 4.46 5.88 -2.91 -0.02 4.44 16 Total: -1.00 -53.85 288.25 7.71 -46.15 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 1.09 Total: 10.40 kcal Atomic # 6 Polarization: -40.42 SS G_CDS: 4.03 Total: -36.39 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: 0.56 Total: -62.59 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.43 kcal Total: -53.85 7.71 -46.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260001962.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.320 kcal (2) G-P(sol) polarization free energy of solvation -53.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds