Wall clock time and date at job start Mon Mar 30 2020 05:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38940 * 119.65220 * 2 1 4 4 C 1.36433 * 120.59208 * 179.72130 * 3 2 1 5 5 C 1.40481 * 119.80515 * 0.24759 * 4 3 2 6 6 C 1.40939 * 133.09099 * 179.97438 * 5 4 3 7 7 C 1.39127 * 107.49530 * 180.02562 * 6 5 4 8 8 C 1.39910 * 125.69658 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00503 * 172.82707 * 8 7 6 10 10 C 1.40187 * 120.00139 * 352.83729 * 8 7 6 11 11 N 1.30745 * 119.99912 * 6.84238 * 10 8 7 12 12 Si 1.86804 * 120.00194 * 186.84561 * 10 8 7 13 13 H 1.48500 * 109.47338 * 94.98566 * 12 10 8 14 14 H 1.48500 * 109.46909 * 214.98383 * 12 10 8 15 15 H 1.48493 * 109.46954 * 334.98138 * 12 10 8 16 16 N 1.38318 * 108.60603 * 359.97438 * 7 6 5 17 17 C 1.46502 * 125.59893 * 180.02562 * 16 7 6 18 18 C 1.52997 * 109.47530 * 299.97923 * 17 16 7 19 19 C 1.53006 * 109.46804 * 59.98140 * 17 16 7 20 20 C 1.38042 * 108.80039 * 0.02562 * 16 7 6 21 21 C 1.37966 * 119.65137 * 180.20733 * 2 1 3 22 22 H 1.09001 * 109.46936 * 90.00970 * 1 2 3 23 23 H 1.09005 * 109.47475 * 210.00064 * 1 2 3 24 24 H 1.09003 * 109.47330 * 330.00693 * 1 2 3 25 25 H 1.08000 * 119.69895 * 359.97438 * 3 2 1 26 26 H 1.08000 * 120.09440 * 180.27239 * 4 3 2 27 27 H 1.07994 * 126.25024 * 0.02562 * 6 5 4 28 28 H 0.97006 * 120.00050 * 180.02562 * 11 10 8 29 29 H 1.08997 * 109.47185 * 179.97438 * 17 16 7 30 30 H 1.09001 * 109.46963 * 60.00355 * 18 17 16 31 31 H 1.09002 * 109.46955 * 179.97438 * 18 17 16 32 32 H 1.08998 * 109.47505 * 299.99900 * 18 17 16 33 33 H 1.09004 * 109.46966 * 59.99597 * 19 17 16 34 34 H 1.08995 * 109.46812 * 179.97438 * 19 17 16 35 35 H 1.08997 * 109.46784 * 299.99675 * 19 17 16 36 36 H 1.08005 * 120.05329 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.2074 0.0000 4 6 3.5585 1.2298 0.0057 5 6 4.2767 0.0225 0.0064 6 6 5.6535 -0.2789 0.0111 7 6 5.7783 -1.6645 0.0086 8 6 6.9833 -2.3756 0.0113 9 1 6.9764 -3.4495 0.1258 10 6 8.1997 -1.6942 -0.1345 11 7 8.2202 -0.3869 -0.1386 12 14 9.7912 -2.6539 -0.3231 13 1 10.1099 -2.8054 -1.7656 14 1 10.8929 -1.9231 0.3531 15 1 9.6359 -3.9959 0.2932 16 7 4.5124 -2.2217 0.0031 17 6 4.2117 -3.6555 -0.0004 18 6 4.8169 -4.3006 -1.2487 19 6 4.8089 -4.3048 1.2498 20 6 3.5788 -1.2049 0.0015 21 6 2.1895 -1.1990 -0.0043 22 1 -0.3633 -0.0002 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8901 0.5137 25 1 1.6438 2.1366 -0.0004 26 1 4.0846 2.1730 0.0101 27 1 6.4635 0.4354 0.0157 28 1 9.0619 0.0847 -0.2398 29 1 3.1314 -3.8002 -0.0040 30 1 5.8973 -4.1560 -1.2449 31 1 4.5936 -5.3675 -1.2510 32 1 4.3915 -3.8381 -2.1393 33 1 4.3777 -3.8452 2.1392 34 1 4.5848 -5.3715 1.2474 35 1 5.8892 -4.1601 1.2535 36 1 1.6447 -2.1315 -0.0081 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260003687.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:53 Heat of formation + Delta-G solvation = 34.769305 kcal Electronic energy + Delta-G solvation = -17461.157714 eV Core-core repulsion = 14909.722945 eV Total energy + Delta-G solvation = -2551.434769 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.90744 -36.66619 -34.24880 -33.43223 -30.82035 -29.47600 -27.47966 -27.01103 -26.70060 -23.75727 -21.76110 -20.91683 -19.62561 -18.51918 -16.88255 -15.68065 -15.56774 -14.43688 -14.01750 -13.79461 -13.70048 -13.18496 -12.92378 -12.80895 -12.19826 -12.10667 -11.82249 -11.71873 -11.63127 -11.38065 -11.35977 -11.02078 -10.82825 -10.81666 -10.41502 -10.27325 -9.99992 -9.59390 -9.45990 -9.26818 -8.25765 -6.97595 -6.70535 -6.29412 -4.33527 2.35714 2.83334 2.97908 3.00602 3.03336 3.78308 4.08684 4.14923 5.02161 5.30641 5.38332 5.61575 5.66922 5.74282 5.80203 6.00750 6.01871 6.07173 6.16242 6.19816 6.26805 6.33123 6.35559 6.57594 6.62257 6.75499 6.84156 6.96538 7.04293 7.08264 7.38518 7.68596 7.70839 7.84312 7.91908 8.06327 8.37685 8.69944 8.78772 9.01651 9.20404 10.14358 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.027408 B = 0.008000 C = 0.006471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.338838 B = 3499.374780 C = 4325.789999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.154 4.154 3 C -0.136 4.136 4 C -0.134 4.134 5 C -0.047 4.047 6 C -0.327 4.327 7 C 0.269 3.731 8 C -0.443 4.443 9 H 0.084 0.916 10 C 0.072 3.928 11 N -0.777 5.777 12 Si 0.921 3.079 13 H -0.269 1.269 14 H -0.275 1.275 15 H -0.262 1.262 16 N -0.507 5.507 17 C 0.151 3.849 18 C -0.167 4.167 19 C -0.168 4.168 20 C 0.043 3.957 21 C -0.115 4.115 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.162 0.838 28 H 0.279 0.721 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.349 -4.325 -0.078 6.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.156 4.156 3 C -0.155 4.155 4 C -0.153 4.153 5 C -0.052 4.052 6 C -0.349 4.349 7 C 0.164 3.836 8 C -0.475 4.475 9 H 0.102 0.898 10 C -0.148 4.148 11 N -0.402 5.402 12 Si 0.745 3.255 13 H -0.194 1.194 14 H -0.200 1.200 15 H -0.186 1.186 16 N -0.198 5.198 17 C 0.048 3.952 18 C -0.225 4.225 19 C -0.226 4.226 20 C -0.060 4.060 21 C -0.136 4.136 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.114 0.886 26 H 0.119 0.881 27 H 0.179 0.821 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.233 -4.439 -0.086 6.135 hybrid contribution 0.625 -0.415 -0.116 0.759 sum -3.608 -4.854 -0.202 6.052 Atomic orbital electron populations 1.20491 0.93003 1.00834 1.00399 1.18971 0.94039 0.92542 1.10004 1.20069 0.93927 0.95848 1.05671 1.20114 0.93194 0.96030 1.05934 1.18522 0.94997 0.91162 1.00526 1.21753 0.92939 0.94493 1.25743 1.18072 0.81938 0.91390 0.92155 1.18837 0.88813 0.94906 1.44989 0.89813 1.25802 1.00902 0.94942 0.93133 1.69736 1.28215 1.07967 1.34312 0.86087 0.80028 0.80128 0.79258 1.19417 1.20007 1.18623 1.44405 1.05290 1.02766 1.67315 1.20794 0.98846 0.80060 0.95520 1.22237 1.03944 0.99068 0.97248 1.22285 1.03874 0.99163 0.97303 1.18199 0.90119 0.88334 1.09303 1.19526 0.90486 0.96428 1.07206 0.93136 0.93227 0.92962 0.88554 0.88131 0.82062 0.90913 0.90882 0.90046 0.92561 0.92800 0.92789 0.92510 0.90074 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.41 9.99 36.00 0.36 -1.05 16 2 C -0.15 -3.10 5.89 -104.46 -0.62 -3.72 16 3 C -0.14 -2.81 9.61 -39.97 -0.38 -3.19 16 4 C -0.13 -3.09 10.08 -39.39 -0.40 -3.48 16 5 C -0.05 -1.21 6.14 -106.91 -0.66 -1.87 16 6 C -0.33 -8.95 9.81 -38.23 -0.37 -9.32 16 7 C 0.27 6.99 6.22 -83.98 -0.52 6.47 16 8 C -0.44 -10.91 7.33 -38.22 -0.28 -11.19 16 9 H 0.08 1.91 4.40 -52.49 -0.23 1.68 16 10 C 0.07 1.71 5.49 -17.28 -0.09 1.62 16 11 N -0.78 -19.49 10.23 55.56 0.57 -18.92 16 12 Si 0.92 17.81 29.57 -169.99 -5.03 12.78 16 13 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 14 H -0.28 -5.26 7.11 56.52 0.40 -4.85 16 15 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 16 N -0.51 -11.92 2.70 -104.47 -0.28 -12.20 16 17 C 0.15 2.87 3.41 -67.93 -0.23 2.63 16 18 C -0.17 -2.89 9.18 37.16 0.34 -2.55 16 19 C -0.17 -2.91 9.18 37.16 0.34 -2.57 16 20 C 0.04 1.05 6.81 -83.69 -0.57 0.48 16 21 C -0.12 -2.48 9.45 -39.43 -0.37 -2.85 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 24 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 25 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 26 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 27 H 0.16 4.60 5.63 -52.49 -0.30 4.30 16 28 H 0.28 6.36 8.29 -40.82 -0.34 6.02 16 29 H 0.07 1.28 7.34 -51.93 -0.38 0.90 16 30 H 0.08 1.54 5.61 -51.93 -0.29 1.25 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.53 5.33 -51.93 -0.28 1.25 16 36 H 0.09 1.78 7.54 -52.48 -0.40 1.38 16 LS Contribution 289.51 15.07 4.36 4.36 Total: -1.00 -27.58 289.51 -8.64 -36.22 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -4.80 Total: 8.36 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: -3.46 Total: -30.59 kcal Atomic # 7 Polarization: -31.41 SS G_CDS: 0.29 Total: -31.13 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -27.58 -8.64 -36.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260003687.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.984 kcal (2) G-P(sol) polarization free energy of solvation -27.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds