Wall clock time and date at job start Mon Mar 30 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38940 * 119.65220 * 2 1 4 4 C 1.36433 * 120.59208 * 179.72130 * 3 2 1 5 5 C 1.40481 * 119.80515 * 0.24759 * 4 3 2 6 6 C 1.40939 * 133.09099 * 179.97438 * 5 4 3 7 7 C 1.39127 * 107.49530 * 180.02562 * 6 5 4 8 8 C 1.39910 * 125.69658 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00503 * 172.82707 * 8 7 6 10 10 C 1.40187 * 120.00139 * 352.83729 * 8 7 6 11 11 N 1.30745 * 119.99912 * 6.84238 * 10 8 7 12 12 Si 1.86804 * 120.00194 * 186.84561 * 10 8 7 13 13 H 1.48500 * 109.47338 * 94.98566 * 12 10 8 14 14 H 1.48500 * 109.46909 * 214.98383 * 12 10 8 15 15 H 1.48493 * 109.46954 * 334.98138 * 12 10 8 16 16 N 1.38318 * 108.60603 * 359.97438 * 7 6 5 17 17 C 1.46502 * 125.59893 * 180.02562 * 16 7 6 18 18 C 1.52997 * 109.47530 * 299.97923 * 17 16 7 19 19 C 1.53006 * 109.46804 * 59.98140 * 17 16 7 20 20 C 1.38042 * 108.80039 * 0.02562 * 16 7 6 21 21 C 1.37966 * 119.65137 * 180.20733 * 2 1 3 22 22 H 1.09001 * 109.46936 * 90.00970 * 1 2 3 23 23 H 1.09005 * 109.47475 * 210.00064 * 1 2 3 24 24 H 1.09003 * 109.47330 * 330.00693 * 1 2 3 25 25 H 1.08000 * 119.69895 * 359.97438 * 3 2 1 26 26 H 1.08000 * 120.09440 * 180.27239 * 4 3 2 27 27 H 1.07994 * 126.25024 * 0.02562 * 6 5 4 28 28 H 0.97006 * 120.00050 * 180.02562 * 11 10 8 29 29 H 1.08997 * 109.47185 * 179.97438 * 17 16 7 30 30 H 1.09001 * 109.46963 * 60.00355 * 18 17 16 31 31 H 1.09002 * 109.46955 * 179.97438 * 18 17 16 32 32 H 1.08998 * 109.47505 * 299.99900 * 18 17 16 33 33 H 1.09004 * 109.46966 * 59.99597 * 19 17 16 34 34 H 1.08995 * 109.46812 * 179.97438 * 19 17 16 35 35 H 1.08997 * 109.46784 * 299.99675 * 19 17 16 36 36 H 1.08005 * 120.05329 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.2074 0.0000 4 6 3.5585 1.2298 0.0057 5 6 4.2767 0.0225 0.0064 6 6 5.6535 -0.2789 0.0111 7 6 5.7783 -1.6645 0.0086 8 6 6.9833 -2.3756 0.0113 9 1 6.9764 -3.4495 0.1258 10 6 8.1997 -1.6942 -0.1345 11 7 8.2202 -0.3869 -0.1386 12 14 9.7912 -2.6539 -0.3231 13 1 10.1099 -2.8054 -1.7656 14 1 10.8929 -1.9231 0.3531 15 1 9.6359 -3.9959 0.2932 16 7 4.5124 -2.2217 0.0031 17 6 4.2117 -3.6555 -0.0004 18 6 4.8169 -4.3006 -1.2487 19 6 4.8089 -4.3048 1.2498 20 6 3.5788 -1.2049 0.0015 21 6 2.1895 -1.1990 -0.0043 22 1 -0.3633 -0.0002 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8901 0.5137 25 1 1.6438 2.1366 -0.0004 26 1 4.0846 2.1730 0.0101 27 1 6.4635 0.4354 0.0157 28 1 9.0619 0.0847 -0.2398 29 1 3.1314 -3.8002 -0.0040 30 1 5.8973 -4.1560 -1.2449 31 1 4.5936 -5.3675 -1.2510 32 1 4.3915 -3.8381 -2.1393 33 1 4.3777 -3.8452 2.1392 34 1 4.5848 -5.3715 1.2474 35 1 5.8892 -4.1601 1.2535 36 1 1.6447 -2.1315 -0.0081 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260003687.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:52 Heat of formation + Delta-G solvation = 21.800030 kcal Electronic energy + Delta-G solvation = -17461.720104 eV Core-core repulsion = 14909.722945 eV Total energy + Delta-G solvation = -2551.997159 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.65583 -38.31162 -35.90814 -35.13283 -32.44320 -31.21211 -29.19027 -28.68855 -28.07219 -25.41943 -23.40559 -22.63885 -21.33769 -20.24831 -18.67363 -17.35575 -17.26342 -16.07607 -15.62661 -15.42876 -15.24164 -14.76721 -14.46346 -14.22304 -13.84566 -13.67563 -13.46890 -13.22517 -12.99304 -12.90900 -12.85670 -12.60710 -12.34747 -12.27761 -12.06318 -11.85347 -11.63121 -11.33532 -11.15757 -10.99625 -10.04340 -8.77093 -8.49687 -8.09808 -6.23978 0.61423 1.11284 1.39810 1.42792 1.54768 2.15590 2.28158 2.49849 3.26244 3.51479 3.85773 4.09285 4.20837 4.28846 4.32984 4.47696 4.69560 4.72892 4.75330 4.86439 4.90722 4.91673 4.98712 5.01365 5.08190 5.16967 5.30600 5.35945 5.37362 5.45340 5.62290 5.91164 5.98378 6.09155 6.10894 6.24342 6.56220 6.81761 6.89383 7.18511 7.36481 8.38204 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.027408 B = 0.008000 C = 0.006471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.338838 B = 3499.374780 C = 4325.789999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.142 4.142 3 C -0.136 4.136 4 C -0.152 4.152 5 C -0.088 4.088 6 C -0.377 4.377 7 C 0.252 3.748 8 C -0.461 4.461 9 H 0.099 0.901 10 C 0.024 3.976 11 N -0.815 5.815 12 Si 0.996 3.004 13 H -0.265 1.265 14 H -0.271 1.271 15 H -0.249 1.249 16 N -0.510 5.510 17 C 0.139 3.861 18 C -0.159 4.159 19 C -0.160 4.160 20 C 0.025 3.975 21 C -0.125 4.125 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.130 0.870 26 H 0.102 0.898 27 H 0.137 0.863 28 H 0.284 0.716 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.041 0.959 33 H 0.042 0.958 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.263 -6.233 -0.149 8.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.144 4.144 3 C -0.156 4.156 4 C -0.171 4.171 5 C -0.093 4.093 6 C -0.401 4.401 7 C 0.146 3.854 8 C -0.493 4.493 9 H 0.117 0.883 10 C -0.191 4.191 11 N -0.441 5.441 12 Si 0.816 3.184 13 H -0.190 1.190 14 H -0.196 1.196 15 H -0.172 1.172 16 N -0.200 5.200 17 C 0.037 3.963 18 C -0.217 4.217 19 C -0.218 4.218 20 C -0.078 4.078 21 C -0.146 4.146 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.148 0.852 26 H 0.120 0.880 27 H 0.154 0.846 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.080 0.920 31 H 0.116 0.884 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.116 0.884 35 H 0.079 0.921 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.181 -6.361 -0.153 8.870 hybrid contribution 1.032 0.272 -0.091 1.071 sum -5.149 -6.089 -0.244 7.977 Atomic orbital electron populations 1.20566 0.89088 1.02720 1.02103 1.19630 0.96833 0.91601 1.06297 1.20480 0.92970 0.97860 1.04251 1.20368 0.94655 0.95463 1.06634 1.18832 0.94827 0.93170 1.02447 1.21707 0.93513 0.95472 1.29372 1.18300 0.83485 0.91304 0.92312 1.19204 0.88964 0.95663 1.45496 0.88338 1.26883 1.04359 0.95750 0.92126 1.69884 1.29289 1.09793 1.35122 0.84971 0.75189 0.78983 0.79269 1.18980 1.19611 1.17210 1.44640 1.04239 1.04426 1.66710 1.21213 1.00214 0.77818 0.97020 1.22175 1.02309 1.01356 0.95872 1.22215 1.02207 1.01439 0.95931 1.18625 0.91437 0.88146 1.09591 1.19913 0.89374 0.98330 1.07028 0.91333 0.91555 0.91006 0.85182 0.88003 0.84560 0.90510 0.89075 0.92039 0.88436 0.93981 0.93918 0.88399 0.92093 0.86339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.33 9.99 71.24 0.71 -1.62 16 2 C -0.14 -5.33 5.89 -19.76 -0.12 -5.45 16 3 C -0.14 -5.43 9.61 22.02 0.21 -5.21 16 4 C -0.15 -7.23 10.08 22.40 0.23 -7.00 16 5 C -0.09 -4.76 6.14 -21.35 -0.13 -4.89 16 6 C -0.38 -22.24 9.81 23.15 0.23 -22.01 16 7 C 0.25 13.75 6.22 38.74 0.24 13.99 16 8 C -0.46 -23.52 7.33 23.15 0.17 -23.35 16 9 H 0.10 4.56 4.40 -2.91 -0.01 4.54 16 10 C 0.02 1.21 5.49 85.33 0.47 1.68 16 11 N -0.82 -43.36 10.23 21.87 0.22 -43.14 16 12 Si 1.00 36.96 29.57 68.60 2.03 38.99 16 13 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 14 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 15 H -0.25 -8.61 7.11 99.48 0.71 -7.91 16 16 N -0.51 -24.43 2.70 -484.45 -1.31 -25.74 16 17 C 0.14 5.10 3.41 44.99 0.15 5.25 16 18 C -0.16 -5.28 9.18 71.98 0.66 -4.62 16 19 C -0.16 -5.29 9.18 71.98 0.66 -4.63 16 20 C 0.03 1.25 6.81 39.06 0.27 1.51 16 21 C -0.13 -5.18 9.45 22.37 0.21 -4.97 16 22 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.07 1.57 8.08 -2.38 -0.02 1.55 16 24 H 0.07 1.66 8.08 -2.39 -0.02 1.64 16 25 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 26 H 0.10 4.60 8.06 -2.91 -0.02 4.57 16 27 H 0.14 8.52 5.63 -2.91 -0.02 8.51 16 28 H 0.28 13.68 8.29 -92.70 -0.77 12.91 16 29 H 0.09 2.98 7.34 -2.39 -0.02 2.96 16 30 H 0.06 2.29 5.61 -2.39 -0.01 2.27 16 31 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.06 2.26 5.33 -2.39 -0.01 2.25 16 36 H 0.12 4.20 7.54 -2.91 -0.02 4.17 16 Total: -1.00 -64.23 289.51 5.98 -58.25 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: 1.07 Total: 32.95 kcal Atomic # 6 Polarization: -65.28 SS G_CDS: 3.96 Total: -61.32 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -1.08 Total: -68.88 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Total: -64.23 5.98 -58.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260003687.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.054 kcal (2) G-P(sol) polarization free energy of solvation -64.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds