Wall clock time and date at job start Mon Mar 30 2020 05:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86798 * 120.00264 * 2 1 4 4 H 1.48494 * 109.47341 * 274.52633 * 3 2 1 5 5 H 1.48504 * 109.46750 * 34.52535 * 3 2 1 6 6 H 1.48507 * 109.47048 * 154.51808 * 3 2 1 7 7 C 1.39933 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00536 * 162.28227 * 7 2 1 9 9 C 1.41416 * 119.99638 * 342.55549 * 7 2 1 10 10 C 1.40823 * 120.20989 * 334.54220 * 9 7 2 11 11 C 1.37648 * 119.59171 * 179.81347 * 10 9 7 12 12 C 1.38326 * 120.54181 * 0.66041 * 11 10 9 13 13 C 1.39834 * 120.73073 * 359.68094 * 12 11 10 14 14 C 1.38373 * 119.22491 * 359.76613 * 13 12 11 15 15 C 1.51537 * 108.10178 * 180.68304 * 14 13 12 16 16 C 1.54613 * 102.79481 * 15.90640 * 15 14 13 17 17 N 1.40100 * 129.78379 * 179.61664 * 13 12 11 18 18 C 1.46901 * 111.00083 * 283.55279 * 17 13 12 19 19 C 1.53777 * 113.61328 * 274.30117 * 18 17 13 20 20 C 1.53956 * 87.01995 * 220.04769 * 19 18 17 21 21 C 1.53778 * 113.61388 * 176.69023 * 18 17 13 22 22 H 0.96998 * 119.99691 * 359.97438 * 1 2 3 23 23 H 1.07999 * 120.20681 * 0.09395 * 10 9 7 24 24 H 1.08003 * 119.72893 * 180.36797 * 11 10 9 25 25 H 1.07998 * 119.63542 * 179.66729 * 12 11 10 26 26 H 1.08999 * 110.74963 * 134.22930 * 15 14 13 27 27 H 1.09005 * 110.74951 * 257.57813 * 15 14 13 28 28 H 1.08998 * 110.79802 * 92.82101 * 16 15 14 29 29 H 1.09004 * 110.79514 * 216.11332 * 16 15 14 30 30 H 1.08998 * 112.84653 * 45.49802 * 18 17 13 31 31 H 1.09001 * 113.61263 * 334.56758 * 19 18 17 32 32 H 1.09000 * 113.61542 * 105.46734 * 19 18 17 33 33 H 1.09000 * 113.53443 * 270.81398 * 20 19 18 34 34 H 1.08998 * 113.74582 * 139.94590 * 20 19 18 35 35 H 1.08996 * 113.61736 * 254.52505 * 21 18 17 36 36 H 1.09006 * 113.61366 * 25.35451 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3942 2.1016 -1.3956 5 1 1.4909 2.6231 0.7936 6 1 3.5844 1.4143 0.6024 7 6 2.0080 -1.2119 -0.0005 8 1 3.0495 -1.2340 -0.2852 9 6 1.3496 -2.4085 0.3661 10 6 0.2258 -2.3679 1.2138 11 6 -0.4076 -3.5401 1.5594 12 6 0.0590 -4.7555 1.0920 13 6 1.1776 -4.8175 0.2552 14 6 1.8154 -3.6445 -0.1080 15 6 2.9710 -4.0002 -1.0215 16 6 2.6414 -5.4513 -1.4413 17 7 1.8095 -5.9299 -0.3157 18 6 2.6263 -6.6391 0.6783 19 6 4.0449 -6.0658 0.8319 20 6 4.5350 -7.5215 0.9371 21 6 3.2842 -7.9185 0.1352 22 1 -0.4849 0.8401 0.0004 23 1 -0.1395 -1.4225 1.5868 24 1 -1.2732 -3.5110 2.2046 25 1 -0.4460 -5.6667 1.3768 26 1 2.9930 -3.3425 -1.8904 27 1 3.9169 -3.9599 -0.4813 28 1 2.0766 -5.4658 -2.3734 29 1 3.5517 -6.0439 -1.5329 30 1 2.1084 -6.7831 1.6265 31 1 4.4048 -5.5470 -0.0566 32 1 4.1863 -5.4894 1.7462 33 1 4.5402 -7.9064 1.9568 34 1 5.4699 -7.7091 0.4091 35 1 2.8125 -8.8356 0.4878 36 1 3.4346 -7.9078 -0.9444 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260029106.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:07 Heat of formation + Delta-G solvation = 56.842593 kcal Electronic energy + Delta-G solvation = -17567.509261 eV Core-core repulsion = 15017.031662 eV Total energy + Delta-G solvation = -2550.477599 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.37421 -37.44867 -34.94878 -33.28097 -30.79363 -28.35993 -27.83998 -25.34954 -25.02046 -24.10837 -21.80086 -20.22877 -19.70383 -18.64011 -17.23753 -16.04539 -15.35051 -15.00961 -14.49562 -14.24786 -14.00482 -13.31756 -12.84046 -12.45791 -12.27186 -11.89524 -11.61866 -11.58937 -11.55316 -11.13661 -11.04568 -10.81555 -10.78634 -10.47349 -10.38854 -10.07453 -10.01125 -9.74101 -9.34061 -9.17780 -8.30047 -7.35073 -6.76234 -6.68044 -4.34820 2.78818 2.90551 3.06846 3.11071 3.22070 3.93523 4.43576 4.63415 4.88155 4.91472 5.10315 5.25497 5.51966 5.57758 5.81590 5.86179 5.87560 5.94183 5.95607 6.05809 6.25578 6.29231 6.34142 6.43701 6.54649 6.59276 6.75744 6.84752 7.05672 7.14707 7.19736 7.32776 7.70214 7.79675 7.95508 8.08898 8.12272 8.39437 8.65648 8.91020 8.99030 10.20141 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032523 B = 0.007020 C = 0.006288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.718697 B = 3987.687337 C = 4452.030749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.077 3.923 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.461 4.461 8 H 0.075 0.925 9 C 0.136 3.864 10 C -0.168 4.168 11 C -0.097 4.097 12 C -0.222 4.222 13 C 0.101 3.899 14 C -0.234 4.234 15 C -0.087 4.087 16 C 0.046 3.954 17 N -0.483 5.483 18 C 0.073 3.927 19 C -0.178 4.178 20 C -0.142 4.142 21 C -0.133 4.133 22 H 0.280 0.720 23 H 0.119 0.881 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.715 -7.518 0.433 9.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.491 4.491 8 H 0.093 0.907 9 C 0.133 3.867 10 C -0.187 4.187 11 C -0.116 4.116 12 C -0.243 4.243 13 C 0.006 3.994 14 C -0.237 4.237 15 C -0.125 4.125 16 C -0.081 4.081 17 N -0.199 5.199 18 C -0.034 4.034 19 C -0.217 4.217 20 C -0.180 4.180 21 C -0.171 4.171 22 H 0.091 0.909 23 H 0.137 0.863 24 H 0.110 0.890 25 H 0.105 0.895 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.132 -7.763 0.223 9.309 hybrid contribution 0.778 1.381 0.227 1.601 sum 5.910 -6.382 0.450 8.710 Atomic orbital electron populations 1.69835 1.07543 1.29105 1.35443 1.25884 0.94678 1.01184 0.92270 0.86370 0.80791 0.80951 0.79030 1.19620 1.20040 1.18506 1.19509 0.97946 0.91137 1.40519 0.90661 1.16938 0.90779 0.90626 0.88322 1.21258 0.99435 0.96759 1.01286 1.20457 0.98594 0.92793 0.99727 1.19698 0.99978 0.96446 1.08198 1.19035 0.95081 0.88380 0.96856 1.20585 1.01233 0.94247 1.07663 1.21372 0.97043 0.95488 0.98575 1.23093 0.96068 0.94622 0.94291 1.60238 1.27114 1.24478 1.08119 1.23200 0.90906 0.93998 0.95304 1.23911 0.98360 0.96295 1.03090 1.22768 0.97627 0.97336 1.00276 1.23108 0.96117 0.97682 1.00240 0.90939 0.86332 0.89004 0.89485 0.91581 0.92306 0.90549 0.90917 0.88438 0.88724 0.91686 0.90567 0.91745 0.91646 0.89964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.61 11.00 55.55 0.61 -20.00 16 2 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 3 Si 0.90 18.71 29.59 -169.99 -5.03 13.68 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.46 -12.23 8.86 -37.74 -0.33 -12.56 16 8 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 9 C 0.14 3.64 5.56 -106.92 -0.59 3.05 16 10 C -0.17 -4.40 8.70 -38.82 -0.34 -4.74 16 11 C -0.10 -2.31 9.99 -39.76 -0.40 -2.70 16 12 C -0.22 -5.17 10.07 -38.95 -0.39 -5.56 16 13 C 0.10 2.32 5.53 -83.43 -0.46 1.86 16 14 C -0.23 -5.70 6.11 -103.37 -0.63 -6.33 16 15 C -0.09 -1.77 5.96 -26.62 -0.16 -1.93 16 16 C 0.05 0.82 6.17 -2.42 -0.01 0.81 16 17 N -0.48 -9.45 5.20 -160.59 -0.83 -10.28 16 18 C 0.07 1.22 3.80 -66.90 -0.25 0.97 16 19 C -0.18 -2.72 6.48 -25.83 -0.17 -2.89 16 20 C -0.14 -1.74 8.09 -25.82 -0.21 -1.95 16 21 C -0.13 -1.77 7.49 -25.92 -0.19 -1.96 16 22 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 23 H 0.12 3.19 6.22 -52.49 -0.33 2.86 16 24 H 0.09 1.94 8.06 -52.48 -0.42 1.52 16 25 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 26 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.06 1.14 6.18 -51.93 -0.32 0.82 16 28 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.07 1.09 5.12 -51.93 -0.27 0.83 16 30 H 0.10 1.69 8.10 -51.93 -0.42 1.27 16 31 H 0.09 1.48 4.08 -51.93 -0.21 1.26 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.07 6.83 -51.93 -0.35 0.71 16 LS Contribution 282.72 15.07 4.26 4.26 Total: -1.00 -27.57 282.72 -10.06 -37.63 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -4.83 Total: 6.80 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: -4.24 Total: -32.08 kcal Atomic # 7 Polarization: -30.06 SS G_CDS: -0.22 Total: -30.28 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.57 -10.06 -37.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260029106.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.469 kcal (2) G-P(sol) polarization free energy of solvation -27.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds