Wall clock time and date at job start Mon Mar 30 2020 05:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86798 * 120.00264 * 2 1 4 4 H 1.48494 * 109.47341 * 274.52633 * 3 2 1 5 5 H 1.48504 * 109.46750 * 34.52535 * 3 2 1 6 6 H 1.48507 * 109.47048 * 154.51808 * 3 2 1 7 7 C 1.39933 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00536 * 162.28227 * 7 2 1 9 9 C 1.41416 * 119.99638 * 342.55549 * 7 2 1 10 10 C 1.40823 * 120.20989 * 334.54220 * 9 7 2 11 11 C 1.37648 * 119.59171 * 179.81347 * 10 9 7 12 12 C 1.38326 * 120.54181 * 0.66041 * 11 10 9 13 13 C 1.39834 * 120.73073 * 359.68094 * 12 11 10 14 14 C 1.38373 * 119.22491 * 359.76613 * 13 12 11 15 15 C 1.51537 * 108.10178 * 180.68304 * 14 13 12 16 16 C 1.54613 * 102.79481 * 15.90640 * 15 14 13 17 17 N 1.40100 * 129.78379 * 179.61664 * 13 12 11 18 18 C 1.46901 * 111.00083 * 283.55279 * 17 13 12 19 19 C 1.53777 * 113.61328 * 274.30117 * 18 17 13 20 20 C 1.53956 * 87.01995 * 220.04769 * 19 18 17 21 21 C 1.53778 * 113.61388 * 176.69023 * 18 17 13 22 22 H 0.96998 * 119.99691 * 359.97438 * 1 2 3 23 23 H 1.07999 * 120.20681 * 0.09395 * 10 9 7 24 24 H 1.08003 * 119.72893 * 180.36797 * 11 10 9 25 25 H 1.07998 * 119.63542 * 179.66729 * 12 11 10 26 26 H 1.08999 * 110.74963 * 134.22930 * 15 14 13 27 27 H 1.09005 * 110.74951 * 257.57813 * 15 14 13 28 28 H 1.08998 * 110.79802 * 92.82101 * 16 15 14 29 29 H 1.09004 * 110.79514 * 216.11332 * 16 15 14 30 30 H 1.08998 * 112.84653 * 45.49802 * 18 17 13 31 31 H 1.09001 * 113.61263 * 334.56758 * 19 18 17 32 32 H 1.09000 * 113.61542 * 105.46734 * 19 18 17 33 33 H 1.09000 * 113.53443 * 270.81398 * 20 19 18 34 34 H 1.08998 * 113.74582 * 139.94590 * 20 19 18 35 35 H 1.08996 * 113.61736 * 254.52505 * 21 18 17 36 36 H 1.09006 * 113.61366 * 25.35451 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3942 2.1016 -1.3956 5 1 1.4909 2.6231 0.7936 6 1 3.5844 1.4143 0.6024 7 6 2.0080 -1.2119 -0.0005 8 1 3.0495 -1.2340 -0.2852 9 6 1.3496 -2.4085 0.3661 10 6 0.2258 -2.3679 1.2138 11 6 -0.4076 -3.5401 1.5594 12 6 0.0590 -4.7555 1.0920 13 6 1.1776 -4.8175 0.2552 14 6 1.8154 -3.6445 -0.1080 15 6 2.9710 -4.0002 -1.0215 16 6 2.6414 -5.4513 -1.4413 17 7 1.8095 -5.9299 -0.3157 18 6 2.6263 -6.6391 0.6783 19 6 4.0449 -6.0658 0.8319 20 6 4.5350 -7.5215 0.9371 21 6 3.2842 -7.9185 0.1352 22 1 -0.4849 0.8401 0.0004 23 1 -0.1395 -1.4225 1.5868 24 1 -1.2732 -3.5110 2.2046 25 1 -0.4460 -5.6667 1.3768 26 1 2.9930 -3.3425 -1.8904 27 1 3.9169 -3.9599 -0.4813 28 1 2.0766 -5.4658 -2.3734 29 1 3.5517 -6.0439 -1.5329 30 1 2.1084 -6.7831 1.6265 31 1 4.4048 -5.5470 -0.0566 32 1 4.1863 -5.4894 1.7462 33 1 4.5402 -7.9064 1.9568 34 1 5.4699 -7.7091 0.4091 35 1 2.8125 -8.8356 0.4878 36 1 3.4346 -7.9078 -0.9444 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260029106.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:06 Heat of formation + Delta-G solvation = 42.605042 kcal Electronic energy + Delta-G solvation = -17568.126648 eV Core-core repulsion = 15017.031662 eV Total energy + Delta-G solvation = -2551.094986 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.86652 -39.00171 -36.57946 -35.13213 -32.55395 -30.07166 -29.58393 -26.93667 -26.47374 -25.39641 -23.45102 -21.89909 -21.51905 -19.92333 -18.94679 -17.70904 -16.97575 -16.51299 -16.00051 -15.92797 -15.71593 -14.80795 -14.56342 -13.89787 -13.74140 -13.49275 -13.22143 -13.08566 -12.92926 -12.81098 -12.66331 -12.58484 -12.16787 -12.10290 -11.88403 -11.58420 -11.33641 -11.21940 -11.10027 -11.02840 -9.94875 -9.27827 -8.63618 -8.43736 -6.33900 0.97193 1.02881 1.36310 1.47505 1.52608 2.19651 2.69756 2.97619 3.64469 3.73693 3.80712 3.97736 4.05104 4.08685 4.28959 4.38314 4.55491 4.67034 4.72269 4.79116 4.83743 4.89036 5.05381 5.07817 5.12971 5.13082 5.15306 5.20825 5.25541 5.42235 5.52512 5.60896 5.94224 6.01255 6.08700 6.17219 6.31068 6.53094 6.75639 6.95491 7.07831 8.34128 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032523 B = 0.007020 C = 0.006288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.718697 B = 3987.687337 C = 4452.030749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.036 3.964 3 Si 0.978 3.022 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.494 4.494 8 H 0.072 0.928 9 C 0.105 3.895 10 C -0.199 4.199 11 C -0.098 4.098 12 C -0.232 4.232 13 C 0.102 3.898 14 C -0.257 4.257 15 C -0.084 4.084 16 C 0.054 3.946 17 N -0.487 5.487 18 C 0.056 3.944 19 C -0.183 4.183 20 C -0.124 4.124 21 C -0.120 4.120 22 H 0.287 0.713 23 H 0.102 0.898 24 H 0.114 0.886 25 H 0.106 0.894 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.184 -8.968 0.000 11.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.178 4.178 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.524 4.524 8 H 0.090 0.910 9 C 0.102 3.898 10 C -0.219 4.219 11 C -0.117 4.117 12 C -0.252 4.252 13 C 0.007 3.993 14 C -0.261 4.261 15 C -0.121 4.121 16 C -0.073 4.073 17 N -0.204 5.204 18 C -0.051 4.051 19 C -0.222 4.222 20 C -0.162 4.162 21 C -0.158 4.158 22 H 0.098 0.902 23 H 0.120 0.880 24 H 0.132 0.868 25 H 0.124 0.876 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.126 0.874 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.603 -9.242 -0.209 11.361 hybrid contribution 0.275 1.718 0.380 1.781 sum 6.879 -7.524 0.171 10.196 Atomic orbital electron populations 1.69894 1.09013 1.30431 1.35941 1.26731 0.95432 1.04416 0.91256 0.85257 0.79207 0.76251 0.79380 1.18718 1.19015 1.18364 1.19717 0.98032 0.92327 1.42289 0.90991 1.17340 0.91500 0.91971 0.88995 1.21227 1.00734 0.96941 1.02949 1.20714 0.98951 0.92410 0.99607 1.19992 1.00266 0.96857 1.08130 1.19350 0.94700 0.89460 0.95824 1.21069 1.02670 0.94039 1.08333 1.21400 0.96095 0.97091 0.97554 1.23162 0.97300 0.93157 0.93659 1.60284 1.28195 1.22888 1.08990 1.23440 0.90947 0.96023 0.94693 1.23910 0.97829 0.98254 1.02177 1.22717 0.98133 0.94143 1.01159 1.23064 0.95686 0.96206 1.00809 0.90221 0.88019 0.86755 0.87554 0.92339 0.91445 0.90349 0.87403 0.89598 0.88902 0.93475 0.89444 0.89534 0.90181 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.30 11.00 21.82 0.24 -44.06 16 2 C 0.04 1.87 5.14 85.25 0.44 2.31 16 3 Si 0.98 38.90 29.59 68.60 2.03 40.93 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 5 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.49 -27.15 8.86 23.46 0.21 -26.95 16 8 H 0.07 3.84 7.85 -2.91 -0.02 3.81 16 9 C 0.10 5.82 5.56 -21.35 -0.12 5.70 16 10 C -0.20 -10.87 8.70 22.76 0.20 -10.67 16 11 C -0.10 -4.77 9.99 22.15 0.22 -4.55 16 12 C -0.23 -10.78 10.07 22.68 0.23 -10.55 16 13 C 0.10 4.68 5.53 38.24 0.21 4.89 16 14 C -0.26 -12.79 6.11 -19.06 -0.12 -12.90 16 15 C -0.08 -3.38 5.96 30.66 0.18 -3.20 16 16 C 0.05 1.81 6.17 86.66 0.54 2.34 16 17 N -0.49 -18.30 5.20 -661.99 -3.44 -21.74 16 18 C 0.06 1.74 3.80 45.44 0.17 1.91 16 19 C -0.18 -5.22 6.48 31.18 0.20 -5.02 16 20 C -0.12 -2.55 8.09 31.18 0.25 -2.30 16 21 C -0.12 -2.71 7.49 31.12 0.23 -2.48 16 22 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 23 H 0.10 5.77 6.22 -2.91 -0.02 5.76 16 24 H 0.11 4.87 8.06 -2.91 -0.02 4.84 16 25 H 0.11 4.45 8.06 -2.91 -0.02 4.42 16 26 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.07 2.58 6.18 -2.38 -0.01 2.56 16 28 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.11 2.86 5.12 -2.39 -0.01 2.85 16 30 H 0.09 2.86 8.10 -2.39 -0.02 2.84 16 31 H 0.09 2.67 4.08 -2.39 -0.01 2.66 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.09 1.93 6.83 -2.38 -0.02 1.92 16 Total: -1.00 -61.26 282.72 2.75 -58.51 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 1.07 Total: 27.82 kcal Atomic # 6 Polarization: -64.30 SS G_CDS: 2.85 Total: -61.46 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -3.20 Total: -65.80 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -61.26 2.75 -58.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260029106.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.112 kcal (2) G-P(sol) polarization free energy of solvation -61.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds