Wall clock time and date at job start Mon Mar 30 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46921 * 2 1 4 4 C 1.38834 * 119.66410 * 269.97585 * 3 2 1 5 5 C 1.36621 * 120.52583 * 179.97438 * 4 3 2 6 6 C 1.39627 * 119.76894 * 0.02562 * 5 4 3 7 7 C 1.46483 * 134.03513 * 179.97438 * 6 5 4 8 8 C 1.50694 * 126.50331 * 0.02562 * 7 6 5 9 9 C 1.50703 * 109.47214 * 84.99955 * 8 7 6 10 10 H 1.07994 * 119.99825 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00249 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99861 * 359.97438 * 11 9 8 13 13 Si 1.86791 * 120.00232 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47081 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47465 * 120.00111 * 13 11 9 16 16 H 1.48504 * 109.47330 * 240.00058 * 13 11 9 17 17 C 1.34243 * 106.99867 * 179.75815 * 7 6 5 18 18 N 1.36834 * 109.92898 * 0.43138 * 17 7 6 19 19 C 1.46499 * 125.06362 * 179.81278 * 18 17 7 20 20 C 1.37685 * 109.87232 * 359.55468 * 18 17 7 21 21 C 1.37751 * 119.67003 * 89.99792 * 3 2 1 22 22 H 1.09000 * 109.47025 * 60.00723 * 1 2 3 23 23 H 1.08998 * 109.46973 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47419 * 300.00192 * 1 2 3 25 25 H 1.08998 * 109.47419 * 239.99808 * 2 1 3 26 26 H 1.09000 * 109.47025 * 119.99277 * 2 1 3 27 27 H 1.08000 * 119.73386 * 0.02562 * 4 3 2 28 28 H 1.08000 * 120.11796 * 179.97438 * 5 4 3 29 29 H 1.08996 * 109.47834 * 205.00413 * 8 7 6 30 30 H 1.09002 * 109.47054 * 325.00227 * 8 7 6 31 31 H 0.97000 * 120.00306 * 179.97438 * 12 11 9 32 32 H 1.08001 * 125.03905 * 180.26439 * 17 7 6 33 33 H 1.09002 * 109.47391 * 269.69876 * 19 18 17 34 34 H 1.09001 * 109.46813 * 149.69932 * 19 18 17 35 35 H 1.09004 * 109.47041 * 29.70059 * 19 18 17 36 36 H 1.08004 * 120.10557 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2618 2.0685 -1.2064 5 6 2.7166 3.3566 -1.2269 6 6 2.9532 4.0275 -0.0255 7 6 3.4280 5.3710 0.3141 8 6 3.8122 6.4579 -0.6564 9 6 2.5791 7.2167 -1.0747 10 1 1.6139 6.9398 -0.6771 11 6 2.6832 8.2644 -1.9649 12 7 3.8586 8.6020 -2.4486 13 14 1.1549 9.2054 -2.4827 14 1 -0.0336 8.6330 -1.8007 15 1 1.3020 10.6343 -2.1062 16 1 0.9812 9.0965 -3.9535 17 6 3.4504 5.4523 1.6539 18 7 3.0379 4.2675 2.2000 19 6 2.9403 3.9912 3.6354 20 6 2.7228 3.3755 1.1996 21 6 2.2595 2.0637 1.1969 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 2.0785 1.5501 -2.1360 28 1 2.8933 3.8540 -2.1692 29 1 4.5142 7.1409 -0.1780 30 1 4.2798 6.0124 -1.5344 31 1 3.9319 9.3388 -3.0752 32 1 3.7521 6.3230 2.2173 33 1 3.8850 3.5802 3.9915 34 1 2.1410 3.2717 3.8133 35 1 2.7221 4.9161 4.1694 36 1 2.0779 1.5513 2.1301 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260035946.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:38 Heat of formation + Delta-G solvation = 40.230215 kcal Electronic energy + Delta-G solvation = -16792.200649 eV Core-core repulsion = 14241.002683 eV Total energy + Delta-G solvation = -2551.197966 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.68694 -37.25213 -33.90561 -33.06917 -31.73289 -29.84244 -28.60148 -27.45842 -25.19006 -23.40799 -22.68716 -21.59833 -19.96998 -18.58622 -16.33568 -16.05337 -15.78718 -14.98800 -14.81629 -14.39090 -14.09353 -13.60420 -13.22440 -13.02794 -12.62868 -12.39060 -12.31195 -12.02573 -11.98450 -11.55197 -11.11341 -11.00654 -10.87539 -10.67048 -10.49355 -10.43148 -10.11084 -9.60363 -9.36754 -8.67641 -8.33181 -7.49729 -6.77909 -5.93281 -3.96885 1.70455 2.17307 3.34178 3.36028 3.41017 3.45137 3.53009 4.44119 4.56140 4.95474 5.01693 5.10300 5.34799 5.38209 5.39916 5.47508 5.50260 5.55578 5.59093 5.70729 5.85336 5.93643 6.03004 6.14035 6.26034 6.36896 6.47801 6.64239 6.83115 7.04753 7.17432 7.42207 7.52582 7.65144 7.76847 7.96360 8.02794 8.06485 8.47991 9.08895 9.66312 11.15067 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.022514 B = 0.006406 C = 0.005543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.379689 B = 4369.629974 C = 5050.252429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 C -0.072 4.072 4 C -0.162 4.162 5 C -0.048 4.048 6 C -0.103 4.103 7 C -0.104 4.104 8 C 0.080 3.920 9 C -0.503 4.503 10 H 0.055 0.945 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.284 1.284 17 C 0.006 3.994 18 N -0.497 5.497 19 C 0.087 3.913 20 C 0.097 3.903 21 C -0.139 4.139 22 H 0.057 0.943 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.113 0.887 28 H 0.124 0.876 29 H 0.025 0.975 30 H 0.027 0.973 31 H 0.260 0.740 32 H 0.160 0.840 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.073 -13.945 8.542 16.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.073 4.073 4 C -0.181 4.181 5 C -0.066 4.066 6 C -0.109 4.109 7 C -0.110 4.110 8 C 0.043 3.957 9 C -0.541 4.541 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.537 5.537 13 Si 0.719 3.281 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.114 4.114 18 N -0.182 5.182 19 C -0.055 4.055 20 C -0.009 4.009 21 C -0.160 4.160 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.132 0.868 28 H 0.142 0.858 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.178 0.822 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.994 -13.821 8.795 16.653 hybrid contribution -0.838 0.714 -0.171 1.114 sum -3.832 -13.107 8.625 16.151 Atomic orbital electron populations 1.21746 0.95203 1.01000 1.02338 1.20442 0.95800 0.93096 1.02106 1.19348 1.00010 0.95462 0.92462 1.20365 1.05612 0.95399 0.96773 1.20383 0.95688 0.93353 0.97186 1.19284 1.04807 0.94830 0.91938 1.21248 1.02274 0.94078 0.93435 1.17719 0.96498 0.89591 0.91927 1.21169 0.93637 1.14116 1.25207 0.92645 1.24997 0.95857 0.97271 0.96302 1.69968 1.22800 1.29124 1.31802 0.86549 0.83537 0.79678 0.78365 1.19789 1.21077 1.21013 1.21520 1.07176 0.88852 0.93901 1.43623 1.58654 1.11456 1.04499 1.21740 1.01901 1.02378 0.79504 1.18232 1.02597 0.92039 0.88070 1.19609 1.06976 0.92077 0.97386 0.92427 0.92951 0.92780 0.91325 0.91763 0.86850 0.85789 0.95645 0.95455 0.93070 0.82240 0.92212 0.91041 0.90479 0.87480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.89 37.16 0.37 -1.17 16 2 C -0.08 -0.89 6.05 -27.88 -0.17 -1.05 16 3 C -0.07 -1.09 5.13 -104.58 -0.54 -1.63 16 4 C -0.16 -2.70 9.61 -39.94 -0.38 -3.08 16 5 C -0.05 -0.95 10.05 -39.65 -0.40 -1.34 16 6 C -0.10 -2.23 6.35 -105.14 -0.67 -2.90 16 7 C -0.10 -2.41 5.51 -102.71 -0.57 -2.97 16 8 C 0.08 2.13 5.50 -29.04 -0.16 1.97 16 9 C -0.50 -14.44 9.09 -34.44 -0.31 -14.75 16 10 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 13 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 14 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 C 0.01 0.12 11.20 -16.73 -0.19 -0.06 16 18 N -0.50 -8.66 3.18 -121.80 -0.39 -9.05 16 19 C 0.09 1.04 11.03 59.85 0.66 1.70 16 20 C 0.10 1.84 6.81 -83.99 -0.57 1.26 16 21 C -0.14 -2.25 9.60 -39.43 -0.38 -2.62 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 26 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 27 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 28 H 0.12 2.49 8.06 -52.49 -0.42 2.06 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.16 2.79 8.06 -52.49 -0.42 2.37 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 35 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 36 H 0.11 1.45 8.06 -52.48 -0.42 1.02 16 LS Contribution 308.14 15.07 4.64 4.64 Total: -1.00 -31.87 308.14 -8.88 -40.75 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -5.45 Total: -2.01 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: -3.40 Total: -25.13 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.35 Total: -35.20 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.87 -8.88 -40.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260035946.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.981 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds