Wall clock time and date at job start Mon Mar 30 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46921 * 2 1 4 4 C 1.38834 * 119.66410 * 269.97585 * 3 2 1 5 5 C 1.36621 * 120.52583 * 179.97438 * 4 3 2 6 6 C 1.39627 * 119.76894 * 0.02562 * 5 4 3 7 7 C 1.46483 * 134.03513 * 179.97438 * 6 5 4 8 8 C 1.50694 * 126.50331 * 0.02562 * 7 6 5 9 9 C 1.50703 * 109.47214 * 84.99955 * 8 7 6 10 10 H 1.07994 * 119.99825 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00249 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99861 * 359.97438 * 11 9 8 13 13 Si 1.86791 * 120.00232 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47081 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47465 * 120.00111 * 13 11 9 16 16 H 1.48504 * 109.47330 * 240.00058 * 13 11 9 17 17 C 1.34243 * 106.99867 * 179.75815 * 7 6 5 18 18 N 1.36834 * 109.92898 * 0.43138 * 17 7 6 19 19 C 1.46499 * 125.06362 * 179.81278 * 18 17 7 20 20 C 1.37685 * 109.87232 * 359.55468 * 18 17 7 21 21 C 1.37751 * 119.67003 * 89.99792 * 3 2 1 22 22 H 1.09000 * 109.47025 * 60.00723 * 1 2 3 23 23 H 1.08998 * 109.46973 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47419 * 300.00192 * 1 2 3 25 25 H 1.08998 * 109.47419 * 239.99808 * 2 1 3 26 26 H 1.09000 * 109.47025 * 119.99277 * 2 1 3 27 27 H 1.08000 * 119.73386 * 0.02562 * 4 3 2 28 28 H 1.08000 * 120.11796 * 179.97438 * 5 4 3 29 29 H 1.08996 * 109.47834 * 205.00413 * 8 7 6 30 30 H 1.09002 * 109.47054 * 325.00227 * 8 7 6 31 31 H 0.97000 * 120.00306 * 179.97438 * 12 11 9 32 32 H 1.08001 * 125.03905 * 180.26439 * 17 7 6 33 33 H 1.09002 * 109.47391 * 269.69876 * 19 18 17 34 34 H 1.09001 * 109.46813 * 149.69932 * 19 18 17 35 35 H 1.09004 * 109.47041 * 29.70059 * 19 18 17 36 36 H 1.08004 * 120.10557 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2618 2.0685 -1.2064 5 6 2.7166 3.3566 -1.2269 6 6 2.9532 4.0275 -0.0255 7 6 3.4280 5.3710 0.3141 8 6 3.8122 6.4579 -0.6564 9 6 2.5791 7.2167 -1.0747 10 1 1.6139 6.9398 -0.6771 11 6 2.6832 8.2644 -1.9649 12 7 3.8586 8.6020 -2.4486 13 14 1.1549 9.2054 -2.4827 14 1 -0.0336 8.6330 -1.8007 15 1 1.3020 10.6343 -2.1062 16 1 0.9812 9.0965 -3.9535 17 6 3.4504 5.4523 1.6539 18 7 3.0379 4.2675 2.2000 19 6 2.9403 3.9912 3.6354 20 6 2.7228 3.3755 1.1996 21 6 2.2595 2.0637 1.1969 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 2.0785 1.5501 -2.1360 28 1 2.8933 3.8540 -2.1692 29 1 4.5142 7.1409 -0.1780 30 1 4.2798 6.0124 -1.5344 31 1 3.9319 9.3388 -3.0752 32 1 3.7521 6.3230 2.2173 33 1 3.8850 3.5802 3.9915 34 1 2.1410 3.2717 3.8133 35 1 2.7221 4.9161 4.1694 36 1 2.0779 1.5513 2.1301 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260035946.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:38 Heat of formation + Delta-G solvation = 23.683286 kcal Electronic energy + Delta-G solvation = -16792.918178 eV Core-core repulsion = 14241.002683 eV Total energy + Delta-G solvation = -2551.915495 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.10537 -38.52378 -35.70272 -34.51299 -33.32013 -31.14411 -30.30614 -28.78936 -26.77632 -24.66280 -24.42745 -22.94184 -21.25443 -20.11643 -18.46974 -17.57721 -17.12780 -16.46679 -16.15037 -16.06395 -15.18383 -14.83973 -14.43618 -14.36806 -14.22349 -13.85422 -13.82016 -13.55396 -13.18714 -13.02699 -12.79845 -12.57817 -12.20309 -12.19629 -11.82843 -11.80515 -11.71539 -11.47972 -11.32828 -10.57744 -10.20756 -8.89334 -8.39324 -8.04449 -6.28735 0.30465 0.79202 1.37501 1.38442 1.51877 1.93071 2.07998 2.43279 3.05198 3.12950 3.83420 3.99259 4.03053 4.11227 4.32643 4.37673 4.50939 4.55504 4.63255 4.69472 4.72483 4.78373 4.85040 5.02420 5.10804 5.17696 5.22854 5.23905 5.36449 5.47320 5.58006 5.75552 5.82309 5.83297 6.01566 6.08513 6.28178 6.43782 6.63343 6.83462 7.39216 8.92864 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.022514 B = 0.006406 C = 0.005543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.379689 B = 4369.629974 C = 5050.252429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.073 4.073 3 C -0.067 4.067 4 C -0.153 4.153 5 C -0.084 4.084 6 C -0.142 4.142 7 C -0.164 4.164 8 C 0.095 3.905 9 C -0.519 4.519 10 H 0.045 0.955 11 C 0.004 3.996 12 N -0.932 5.932 13 Si 0.963 3.037 14 H -0.270 1.270 15 H -0.272 1.272 16 H -0.276 1.276 17 C 0.026 3.974 18 N -0.491 5.491 19 C 0.078 3.922 20 C 0.087 3.913 21 C -0.133 4.133 22 H 0.045 0.955 23 H 0.076 0.924 24 H 0.050 0.950 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.136 0.864 28 H 0.099 0.901 29 H 0.004 0.996 30 H -0.008 1.008 31 H 0.265 0.735 32 H 0.179 0.821 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.875 -16.082 10.491 19.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.069 4.069 4 C -0.172 4.172 5 C -0.103 4.103 6 C -0.147 4.147 7 C -0.170 4.170 8 C 0.058 3.942 9 C -0.557 4.557 10 H 0.064 0.936 11 C -0.193 4.193 12 N -0.572 5.572 13 Si 0.787 3.213 14 H -0.194 1.194 15 H -0.198 1.198 16 H -0.202 1.202 17 C -0.097 4.097 18 N -0.175 5.175 19 C -0.062 4.062 20 C -0.020 4.020 21 C -0.153 4.153 22 H 0.064 0.936 23 H 0.095 0.905 24 H 0.069 0.931 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.154 0.846 28 H 0.117 0.883 29 H 0.022 0.978 30 H 0.010 0.990 31 H 0.074 0.926 32 H 0.196 0.804 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.799 -15.987 10.776 19.868 hybrid contribution -0.253 1.273 -0.735 1.492 sum -5.053 -14.713 10.041 18.515 Atomic orbital electron populations 1.21739 0.94365 1.02408 1.01648 1.20525 0.96312 0.90332 1.03884 1.19847 0.98275 0.97304 0.91426 1.20667 1.03720 0.93988 0.98820 1.20405 0.98641 0.95160 0.96096 1.19487 1.06530 0.94732 0.93937 1.20966 1.06871 0.94659 0.94509 1.17333 0.95195 0.90187 0.91521 1.21401 0.93836 1.14774 1.25692 0.93634 1.25891 0.99233 0.98136 0.96069 1.70089 1.25051 1.29772 1.32330 0.85438 0.79314 0.78426 0.78116 1.19399 1.19769 1.20180 1.21674 1.04867 0.90165 0.93030 1.43888 1.57073 1.10051 1.06537 1.22156 1.03894 1.04174 0.76002 1.18519 1.03006 0.93161 0.87320 1.20039 1.05255 0.90774 0.99243 0.93557 0.90535 0.93103 0.90037 0.89605 0.84581 0.88279 0.97802 0.99015 0.92647 0.80378 0.90188 0.88876 0.88683 0.83847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.89 71.98 0.71 -1.79 16 2 C -0.07 -1.38 6.05 29.85 0.18 -1.20 16 3 C -0.07 -1.87 5.13 -19.84 -0.10 -1.97 16 4 C -0.15 -5.02 9.61 22.03 0.21 -4.81 16 5 C -0.08 -3.55 10.05 22.23 0.22 -3.32 16 6 C -0.14 -6.40 6.35 -20.20 -0.13 -6.52 16 7 C -0.16 -8.01 5.51 -18.63 -0.10 -8.11 16 8 C 0.10 5.49 5.50 29.10 0.16 5.65 16 9 C -0.52 -31.44 9.09 25.60 0.23 -31.20 16 10 H 0.05 2.78 7.74 -2.91 -0.02 2.75 16 11 C 0.00 0.25 5.46 84.65 0.46 0.71 16 12 N -0.93 -58.07 13.29 21.45 0.28 -57.79 16 13 Si 0.96 46.13 29.54 68.60 2.03 48.15 16 14 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 15 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 16 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 17 C 0.03 1.04 11.20 83.00 0.93 1.97 16 18 N -0.49 -16.38 3.18 -539.26 -1.71 -18.10 16 19 C 0.08 1.57 11.03 127.77 1.41 2.98 16 20 C 0.09 3.20 6.81 39.03 0.27 3.47 16 21 C -0.13 -3.88 9.60 22.37 0.21 -3.66 16 22 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.08 1.37 8.08 -2.39 -0.02 1.35 16 26 H 0.09 1.31 8.08 -2.39 -0.02 1.29 16 27 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 28 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16 29 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 30 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 31 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 32 H 0.18 6.22 8.06 -2.91 -0.02 6.20 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 1.51 8.10 -2.39 -0.02 1.49 16 35 H 0.09 1.61 8.13 -2.38 -0.02 1.59 16 36 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -73.46 308.14 6.31 -67.16 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 1.04 Total: 8.39 kcal Atomic # 6 Polarization: -52.48 SS G_CDS: 4.67 Total: -47.82 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -1.43 Total: -75.89 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -73.46 6.31 -67.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260035946.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.841 kcal (2) G-P(sol) polarization free energy of solvation -73.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds