Wall clock time and date at job start Mon Mar 30 2020 06:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47408 * 2 1 4 4 C 1.38834 * 119.66570 * 90.00092 * 3 2 1 5 5 C 1.36625 * 120.52446 * 180.25857 * 4 3 2 6 6 C 1.39629 * 119.76103 * 359.48832 * 5 4 3 7 7 C 1.46492 * 134.02655 * 180.20166 * 6 5 4 8 8 C 1.34238 * 106.99842 * 180.25213 * 7 6 5 9 9 C 1.50696 * 125.03664 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47142 * 85.02518 * 9 8 7 11 11 H 1.08000 * 120.00070 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99952 * 180.02562 * 10 9 8 13 13 N 1.31506 * 119.99805 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99859 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47182 * 59.99873 * 14 12 10 16 16 H 1.48503 * 109.47032 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47429 * 300.00023 * 14 12 10 18 18 N 1.36831 * 109.92971 * 0.02562 * 8 7 6 19 19 C 1.46498 * 125.06360 * 179.97438 * 18 8 7 20 20 C 1.37691 * 109.87299 * 359.97438 * 18 8 7 21 21 C 1.37742 * 119.66552 * 269.97397 * 3 2 1 22 22 H 1.09003 * 109.47059 * 300.00384 * 1 2 3 23 23 H 1.09000 * 109.46802 * 59.99912 * 1 2 3 24 24 H 1.08998 * 109.47552 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47059 * 239.99615 * 2 1 3 26 26 H 1.09000 * 109.46802 * 120.00088 * 2 1 3 27 27 H 1.08002 * 119.73493 * 359.97100 * 4 3 2 28 28 H 1.07993 * 120.11552 * 179.74519 * 5 4 3 29 29 H 1.08006 * 126.50029 * 0.21988 * 7 6 5 30 30 H 1.08997 * 109.47345 * 205.02963 * 9 8 7 31 31 H 1.09000 * 109.46975 * 325.02551 * 9 8 7 32 32 H 0.97007 * 120.00330 * 180.02562 * 13 12 10 33 33 H 1.09008 * 109.46533 * 270.01896 * 19 18 8 34 34 H 1.08998 * 109.47286 * 30.01724 * 19 18 8 35 35 H 1.08997 * 109.47206 * 150.02221 * 19 18 8 36 36 H 1.08006 * 120.11291 * 0.02786 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2615 2.0686 1.2064 5 6 2.7119 3.3583 1.2269 6 6 2.9540 4.0271 0.0253 7 6 3.4297 5.3704 -0.3143 8 6 3.4585 5.4494 -1.6541 9 6 3.8874 6.6614 -2.4402 10 6 5.3862 6.6544 -2.5962 11 1 5.9699 5.8527 -2.1685 12 6 6.0125 7.6722 -3.2842 13 7 5.3017 8.6486 -3.8045 14 14 7.8705 7.6638 -3.4769 15 1 8.2879 6.4340 -4.1971 16 1 8.2931 8.8582 -4.2517 17 1 8.5075 7.6923 -2.1358 18 7 3.0397 4.2667 -2.2002 19 6 2.9421 3.9904 -3.6356 20 6 2.7237 3.3751 -1.1997 21 6 2.2602 2.0633 -1.1969 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.0778 1.5504 2.1360 28 1 2.8840 3.8573 2.1690 29 1 3.7045 6.1496 0.3813 30 1 3.4195 6.6404 -3.4244 31 1 3.5813 7.5642 -1.9117 32 1 5.7422 9.3644 -4.2888 33 1 1.9492 4.2653 -3.9917 34 1 3.6935 4.5720 -4.1695 35 1 3.1106 2.9283 -3.8134 36 1 2.0789 1.5508 -2.1301 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260035991.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:07 Heat of formation + Delta-G solvation = 35.372649 kcal Electronic energy + Delta-G solvation = -16729.357038 eV Core-core repulsion = 14177.948433 eV Total energy + Delta-G solvation = -2551.408606 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.73292 -37.40652 -33.64140 -33.22576 -31.67977 -30.10507 -29.24734 -26.75655 -25.53070 -23.80676 -22.48288 -21.31026 -20.34518 -18.58272 -16.48506 -16.26777 -15.71620 -14.99367 -14.67562 -14.53106 -13.92369 -13.67701 -13.24693 -13.10007 -12.61747 -12.46334 -12.11240 -12.00927 -11.83439 -11.65679 -11.30279 -11.11263 -10.92952 -10.80885 -10.62036 -10.45944 -10.30558 -9.80011 -9.50494 -8.96980 -8.52247 -7.43658 -6.91162 -6.13123 -4.18857 1.64474 2.09311 3.27326 3.31571 3.33655 3.47614 3.54167 4.34410 4.39306 4.93043 5.03262 5.19868 5.26328 5.34242 5.42153 5.47490 5.59501 5.69368 5.72294 5.80838 5.88767 5.91086 6.01520 6.11434 6.19616 6.25269 6.48980 6.60845 6.68231 6.97849 7.05475 7.11655 7.33756 7.38562 7.67245 7.81558 7.98726 8.01282 8.22387 8.85627 9.45998 10.95486 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.040536 B = 0.005078 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.570652 B = 5512.947860 C = 5678.792499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.076 4.076 3 C -0.085 4.085 4 C -0.151 4.151 5 C -0.077 4.077 6 C -0.100 4.100 7 C -0.239 4.239 8 C 0.141 3.859 9 C 0.069 3.931 10 C -0.516 4.516 11 H 0.058 0.942 12 C 0.061 3.939 13 N -0.893 5.893 14 Si 0.898 3.102 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.274 1.274 18 N -0.484 5.484 19 C 0.080 3.920 20 C 0.087 3.913 21 C -0.124 4.124 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.112 0.888 28 H 0.115 0.885 29 H 0.140 0.860 30 H 0.029 0.971 31 H 0.046 0.954 32 H 0.264 0.736 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.312 -13.108 4.744 15.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.086 4.086 4 C -0.171 4.171 5 C -0.096 4.096 6 C -0.105 4.105 7 C -0.262 4.262 8 C 0.034 3.966 9 C 0.032 3.968 10 C -0.555 4.555 11 H 0.077 0.923 12 C -0.141 4.141 13 N -0.531 5.531 14 Si 0.725 3.275 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.200 1.200 18 N -0.167 5.167 19 C -0.061 4.061 20 C -0.019 4.019 21 C -0.145 4.145 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.130 0.870 28 H 0.133 0.867 29 H 0.158 0.842 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.312 -12.963 4.276 15.485 hybrid contribution 1.065 0.107 -0.241 1.097 sum -6.247 -12.857 4.035 14.852 Atomic orbital electron populations 1.21747 0.95258 1.01028 1.02216 1.20425 0.95740 0.93077 1.02146 1.19293 1.01311 0.95641 0.92378 1.20309 1.04847 0.95177 0.96736 1.20161 0.99110 0.94136 0.96184 1.19315 1.03919 0.95147 0.92104 1.21322 1.14606 0.96254 0.94027 1.21484 0.93955 0.87677 0.93438 1.18102 0.96676 0.87751 0.94272 1.20977 0.90708 1.08703 1.35063 0.92329 1.24987 0.98611 0.95212 0.95275 1.69935 1.35750 1.11531 1.35914 0.86551 0.85057 0.77431 0.78414 1.20213 1.21146 1.19980 1.43912 1.56416 1.11222 1.05129 1.21852 1.02994 1.01994 0.79306 1.18239 1.03296 0.92165 0.88166 1.19709 1.05296 0.91923 0.97553 0.92601 0.92717 0.92936 0.91678 0.91434 0.87004 0.86705 0.84245 0.95273 0.93551 0.92604 0.92137 0.88695 0.91240 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.89 37.16 0.37 -1.06 16 2 C -0.08 -0.84 6.05 -27.88 -0.17 -1.01 16 3 C -0.09 -1.23 5.13 -104.58 -0.54 -1.77 16 4 C -0.15 -2.24 9.62 -39.94 -0.38 -2.62 16 5 C -0.08 -1.30 10.05 -39.65 -0.40 -1.69 16 6 C -0.10 -1.98 6.37 -105.14 -0.67 -2.65 16 7 C -0.24 -5.15 10.95 -37.67 -0.41 -5.57 16 8 C 0.14 3.20 6.02 -81.77 -0.49 2.70 16 9 C 0.07 1.75 4.97 -29.04 -0.14 1.61 16 10 C -0.52 -14.13 9.09 -34.44 -0.31 -14.44 16 11 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 14 Si 0.90 21.16 29.54 -169.99 -5.02 16.13 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 18 N -0.48 -9.75 3.18 -117.20 -0.37 -10.13 16 19 C 0.08 1.33 10.56 59.85 0.63 1.96 16 20 C 0.09 1.69 6.81 -83.99 -0.57 1.12 16 21 C -0.12 -2.01 9.59 -39.43 -0.38 -2.39 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 26 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 27 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 29 H 0.14 2.86 8.06 -52.48 -0.42 2.43 16 30 H 0.03 0.75 7.34 -51.93 -0.38 0.37 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 34 H 0.09 1.69 7.40 -51.93 -0.38 1.31 16 35 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 36 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 305.88 15.07 4.61 4.61 Total: -1.00 -29.66 305.88 -8.99 -38.64 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.37 Total: -0.23 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -3.57 Total: -24.23 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.36 Total: -34.92 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.66 -8.99 -38.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260035991.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.015 kcal (2) G-P(sol) polarization free energy of solvation -29.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds