Wall clock time and date at job start Mon Mar 30 2020 06:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47408 * 2 1 4 4 C 1.38834 * 119.66570 * 90.00092 * 3 2 1 5 5 C 1.36625 * 120.52446 * 180.25857 * 4 3 2 6 6 C 1.39629 * 119.76103 * 359.48832 * 5 4 3 7 7 C 1.46492 * 134.02655 * 180.20166 * 6 5 4 8 8 C 1.34238 * 106.99842 * 180.25213 * 7 6 5 9 9 C 1.50696 * 125.03664 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47142 * 85.02518 * 9 8 7 11 11 H 1.08000 * 120.00070 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99952 * 180.02562 * 10 9 8 13 13 N 1.31506 * 119.99805 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99859 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47182 * 59.99873 * 14 12 10 16 16 H 1.48503 * 109.47032 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47429 * 300.00023 * 14 12 10 18 18 N 1.36831 * 109.92971 * 0.02562 * 8 7 6 19 19 C 1.46498 * 125.06360 * 179.97438 * 18 8 7 20 20 C 1.37691 * 109.87299 * 359.97438 * 18 8 7 21 21 C 1.37742 * 119.66552 * 269.97397 * 3 2 1 22 22 H 1.09003 * 109.47059 * 300.00384 * 1 2 3 23 23 H 1.09000 * 109.46802 * 59.99912 * 1 2 3 24 24 H 1.08998 * 109.47552 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47059 * 239.99615 * 2 1 3 26 26 H 1.09000 * 109.46802 * 120.00088 * 2 1 3 27 27 H 1.08002 * 119.73493 * 359.97100 * 4 3 2 28 28 H 1.07993 * 120.11552 * 179.74519 * 5 4 3 29 29 H 1.08006 * 126.50029 * 0.21988 * 7 6 5 30 30 H 1.08997 * 109.47345 * 205.02963 * 9 8 7 31 31 H 1.09000 * 109.46975 * 325.02551 * 9 8 7 32 32 H 0.97007 * 120.00330 * 180.02562 * 13 12 10 33 33 H 1.09008 * 109.46533 * 270.01896 * 19 18 8 34 34 H 1.08998 * 109.47286 * 30.01724 * 19 18 8 35 35 H 1.08997 * 109.47206 * 150.02221 * 19 18 8 36 36 H 1.08006 * 120.11291 * 0.02786 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2615 2.0686 1.2064 5 6 2.7119 3.3583 1.2269 6 6 2.9540 4.0271 0.0253 7 6 3.4297 5.3704 -0.3143 8 6 3.4585 5.4494 -1.6541 9 6 3.8874 6.6614 -2.4402 10 6 5.3862 6.6544 -2.5962 11 1 5.9699 5.8527 -2.1685 12 6 6.0125 7.6722 -3.2842 13 7 5.3017 8.6486 -3.8045 14 14 7.8705 7.6638 -3.4769 15 1 8.2879 6.4340 -4.1971 16 1 8.2931 8.8582 -4.2517 17 1 8.5075 7.6923 -2.1358 18 7 3.0397 4.2667 -2.2002 19 6 2.9421 3.9904 -3.6356 20 6 2.7237 3.3751 -1.1997 21 6 2.2602 2.0633 -1.1969 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.0778 1.5504 2.1360 28 1 2.8840 3.8573 2.1690 29 1 3.7045 6.1496 0.3813 30 1 3.4195 6.6404 -3.4244 31 1 3.5813 7.5642 -1.9117 32 1 5.7422 9.3644 -4.2888 33 1 1.9492 4.2653 -3.9917 34 1 3.6935 4.5720 -4.1695 35 1 3.1106 2.9283 -3.8134 36 1 2.0789 1.5508 -2.1301 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260035991.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:07 Heat of formation + Delta-G solvation = 21.255412 kcal Electronic energy + Delta-G solvation = -16729.969208 eV Core-core repulsion = 14177.948433 eV Total energy + Delta-G solvation = -2552.020775 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.18073 -38.67624 -35.42008 -34.62543 -33.17765 -31.58758 -30.71063 -28.22664 -26.98228 -25.49831 -23.71925 -22.72929 -21.64644 -20.08790 -18.58278 -17.69742 -17.12416 -16.54975 -16.15255 -15.96742 -15.11004 -14.94873 -14.44008 -14.35157 -14.24758 -13.90396 -13.75498 -13.40504 -13.27248 -13.15652 -12.81205 -12.67798 -12.45268 -12.16223 -11.92629 -11.78520 -11.76895 -11.47380 -11.38201 -10.65359 -10.38084 -8.85289 -8.45029 -8.19568 -6.38977 0.30642 0.79327 1.38411 1.40716 1.49109 1.89333 2.04931 2.39586 3.03492 3.06270 3.80578 3.94817 4.03715 4.09340 4.31635 4.36499 4.41239 4.56456 4.60860 4.64110 4.70881 4.76229 4.86549 4.94548 5.08045 5.17563 5.19336 5.21663 5.27145 5.36050 5.47399 5.65754 5.70570 5.81919 5.98460 6.06586 6.16085 6.43613 6.57439 6.70421 7.30119 8.83622 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.040536 B = 0.005078 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.570652 B = 5512.947860 C = 5678.792499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.075 4.075 3 C -0.072 4.072 4 C -0.146 4.146 5 C -0.085 4.085 6 C -0.134 4.134 7 C -0.249 4.249 8 C 0.109 3.891 9 C 0.083 3.917 10 C -0.531 4.531 11 H 0.049 0.951 12 C 0.014 3.986 13 N -0.924 5.924 14 Si 0.965 3.035 15 H -0.269 1.269 16 H -0.277 1.277 17 H -0.271 1.271 18 N -0.490 5.490 19 C 0.078 3.922 20 C 0.073 3.927 21 C -0.135 4.135 22 H 0.053 0.947 23 H 0.045 0.955 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.147 0.853 28 H 0.131 0.869 29 H 0.136 0.864 30 H 0.015 0.985 31 H 0.020 0.980 32 H 0.268 0.732 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.466 -16.083 5.559 18.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.073 4.073 4 C -0.165 4.165 5 C -0.103 4.103 6 C -0.138 4.138 7 C -0.273 4.273 8 C 0.001 3.999 9 C 0.046 3.954 10 C -0.569 4.569 11 H 0.067 0.933 12 C -0.186 4.186 13 N -0.563 5.563 14 Si 0.789 3.211 15 H -0.194 1.194 16 H -0.202 1.202 17 H -0.196 1.196 18 N -0.173 5.173 19 C -0.063 4.063 20 C -0.032 4.032 21 C -0.155 4.155 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.105 0.895 27 H 0.165 0.835 28 H 0.149 0.851 29 H 0.153 0.847 30 H 0.033 0.967 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.478 -15.955 5.088 18.341 hybrid contribution 1.013 0.906 -0.398 1.416 sum -6.465 -15.049 4.689 17.037 Atomic orbital electron populations 1.21732 0.94236 1.02364 1.01747 1.20528 0.96438 0.90567 1.03716 1.19838 0.98661 0.97227 0.91587 1.20755 1.02948 0.94319 0.98434 1.20463 0.98974 0.95080 0.95801 1.19516 1.05885 0.94538 0.93892 1.21472 1.14403 0.97553 0.93842 1.21035 0.96848 0.88252 0.93720 1.17742 0.95765 0.88413 0.93511 1.21188 0.91867 1.08647 1.35240 0.93289 1.25821 1.03404 0.94638 0.94703 1.70041 1.37716 1.12128 1.36454 0.85510 0.79206 0.77877 0.78534 1.19381 1.20206 1.19565 1.43991 1.56334 1.10568 1.06439 1.22002 1.03235 1.03488 0.77580 1.18652 1.03783 0.93202 0.87605 1.20046 1.05300 0.90757 0.99413 0.92776 0.93555 0.90767 0.90558 0.89539 0.83542 0.85087 0.84653 0.96711 0.96146 0.92289 0.90545 0.90854 0.88249 0.85121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.89 71.98 0.71 -1.52 16 2 C -0.08 -1.31 6.05 29.85 0.18 -1.13 16 3 C -0.07 -1.83 5.13 -19.84 -0.10 -1.94 16 4 C -0.15 -3.80 9.62 22.04 0.21 -3.59 16 5 C -0.08 -2.71 10.05 22.23 0.22 -2.48 16 6 C -0.13 -5.32 6.37 -20.20 -0.13 -5.45 16 7 C -0.25 -11.25 10.95 23.51 0.26 -11.00 16 8 C 0.11 5.19 6.02 40.86 0.25 5.44 16 9 C 0.08 4.48 4.97 29.10 0.14 4.62 16 10 C -0.53 -30.31 9.09 25.60 0.23 -30.07 16 11 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 12 C 0.01 0.76 5.46 84.66 0.46 1.22 16 13 N -0.92 -54.32 13.29 21.45 0.28 -54.04 16 14 Si 0.96 43.90 29.54 68.60 2.03 45.92 16 15 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 16 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 N -0.49 -20.20 3.18 -524.70 -1.67 -21.87 16 19 C 0.08 2.60 10.56 127.77 1.35 3.95 16 20 C 0.07 2.80 6.81 39.03 0.27 3.06 16 21 C -0.13 -4.05 9.59 22.37 0.21 -3.84 16 22 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.08 1.21 8.08 -2.39 -0.02 1.19 16 26 H 0.09 1.24 8.08 -2.39 -0.02 1.22 16 27 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 28 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 29 H 0.14 5.93 8.06 -2.91 -0.02 5.91 16 30 H 0.01 0.81 7.34 -2.39 -0.02 0.79 16 31 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.27 14.79 8.31 -92.70 -0.77 14.02 16 33 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.07 2.73 7.40 -2.39 -0.02 2.72 16 35 H 0.10 2.64 8.10 -2.39 -0.02 2.62 16 36 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -65.81 305.88 5.96 -59.85 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 1.04 Total: 12.86 kcal Atomic # 6 Polarization: -47.00 SS G_CDS: 4.27 Total: -42.73 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -1.38 Total: -75.91 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -65.81 5.96 -59.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260035991.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.105 kcal (2) G-P(sol) polarization free energy of solvation -65.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds