Wall clock time and date at job start Mon Mar 30 2020 06:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38385 * 119.92394 * 2 1 4 4 C 1.38341 * 120.30763 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.92720 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47265 * 67.51092 * 5 4 3 7 7 C 1.52999 * 109.47075 * 307.50885 * 5 4 3 8 8 C 1.50699 * 109.47168 * 187.51108 * 5 4 3 9 9 H 1.08000 * 119.99774 * 244.83360 * 8 5 4 10 10 C 1.37874 * 119.99976 * 64.55463 * 8 5 4 11 11 N 1.31517 * 120.00210 * 181.57813 * 10 8 5 12 12 Si 1.86797 * 120.00298 * 1.58018 * 10 8 5 13 13 H 1.48507 * 109.47223 * 92.50696 * 12 10 8 14 14 H 1.48503 * 109.47625 * 212.50919 * 12 10 8 15 15 H 1.48501 * 109.46848 * 332.50971 * 12 10 8 16 16 C 1.37978 * 120.15056 * 0.27557 * 4 3 2 17 17 C 1.39616 * 119.83867 * 359.45781 * 16 4 3 18 18 C 1.43200 * 120.14632 * 180.24974 * 17 16 4 19 19 N 4.80112 * 134.70680 * 180.02562 * 2 1 3 20 20 C 1.37926 * 119.92471 * 180.02562 * 2 1 3 21 21 C 1.50697 * 120.07889 * 359.95938 * 20 2 1 22 22 H 1.09004 * 109.47188 * 89.99629 * 1 2 3 23 23 H 1.08995 * 109.47539 * 209.99667 * 1 2 3 24 24 H 1.08997 * 109.47188 * 330.00112 * 1 2 3 25 25 H 1.07999 * 119.84765 * 0.04200 * 3 2 1 26 26 H 1.08997 * 109.47310 * 180.02562 * 6 5 4 27 27 H 1.08999 * 109.47020 * 300.00454 * 6 5 4 28 28 H 1.09005 * 109.47072 * 60.00027 * 6 5 4 29 29 H 1.09006 * 109.47263 * 295.88504 * 7 5 4 30 30 H 1.08998 * 109.46895 * 55.87856 * 7 5 4 31 31 H 1.09000 * 109.47381 * 175.87851 * 7 5 4 32 32 H 0.96996 * 120.00254 * 180.02562 * 11 10 8 33 33 H 1.07992 * 120.07712 * 179.72710 * 16 4 3 34 34 H 1.09002 * 109.47075 * 89.99626 * 21 20 2 35 35 H 1.09000 * 109.47591 * 210.00051 * 21 20 2 36 36 H 1.09009 * 109.46724 * 329.99937 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1994 0.0000 4 6 3.5807 1.2086 -0.0005 5 6 4.3237 2.5197 0.0001 6 6 4.0957 3.2346 1.3334 7 6 3.8106 3.3972 -1.1434 8 6 5.7968 2.2623 -0.1864 9 1 6.4918 2.5060 0.6035 10 6 6.2567 1.7104 -1.3632 11 7 7.5383 1.4570 -1.5141 12 14 5.0593 1.3225 -2.7435 13 1 4.9798 2.4806 -3.6699 14 1 5.5306 0.1260 -3.4862 15 1 3.7155 1.0528 -2.1719 16 6 4.2817 0.0202 -0.0068 17 6 3.5915 -1.1934 -0.0012 18 6 4.3124 -2.4307 -0.0022 19 7 4.8844 -3.4122 -0.0015 20 6 2.1950 -1.1954 -0.0005 21 6 1.4416 -2.5005 -0.0002 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5137 24 1 -0.3633 0.8900 0.5138 25 1 1.6536 2.1325 0.0007 26 1 4.6328 4.1830 1.3336 27 1 3.0303 3.4207 1.4683 28 1 4.4613 2.6094 2.1480 29 1 4.0388 2.9213 -2.0972 30 1 2.7321 3.5230 -1.0490 31 1 4.2954 4.3725 -1.0987 32 1 7.8619 1.0690 -2.3421 33 1 5.3615 0.0288 -0.0117 34 1 1.2593 -2.8150 -1.0278 35 1 2.0310 -3.2602 0.5132 36 1 0.4894 -2.3702 0.5143 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260060895.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:25 Heat of formation + Delta-G solvation = 50.957689 kcal Electronic energy + Delta-G solvation = -17689.701526 eV Core-core repulsion = 15138.968739 eV Total energy + Delta-G solvation = -2550.732788 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.76979 -36.62230 -35.73213 -32.34746 -32.20319 -31.11187 -27.39072 -26.61243 -26.37847 -24.81479 -22.80597 -21.09467 -18.97635 -17.50557 -16.13161 -15.74879 -15.30542 -14.79495 -14.31771 -13.66992 -13.15530 -12.99536 -12.96114 -12.78898 -12.65242 -12.55527 -12.43348 -12.38319 -12.15445 -11.75793 -11.61328 -11.27046 -11.12331 -10.80098 -10.52862 -10.24192 -10.10732 -9.96229 -9.23612 -9.08868 -8.62647 -8.24830 -7.68198 -6.19650 -4.21173 1.30671 1.86316 3.10247 3.23393 3.34921 3.38516 3.46828 4.31161 4.36156 4.37720 5.01944 5.05613 5.20290 5.31400 5.40707 5.60110 5.74281 5.80198 5.87613 5.96068 5.99041 6.06351 6.15068 6.18813 6.30497 6.41223 6.43405 6.63018 6.68041 6.69881 6.80321 6.92759 7.14744 7.16185 7.30388 7.50833 7.73297 7.92767 8.41472 8.85418 9.41360 10.91378 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.019577 B = 0.011566 C = 0.008947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.899287 B = 2420.364275 C = 3128.648597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.100 4.100 3 C -0.100 4.100 4 C -0.040 4.040 5 C 0.063 3.937 6 C -0.116 4.116 7 C -0.139 4.139 8 C -0.514 4.514 9 H 0.080 0.920 10 C 0.077 3.923 11 N -0.891 5.891 12 Si 0.863 3.137 13 H -0.284 1.284 14 H -0.301 1.301 15 H -0.238 1.238 16 C -0.053 4.053 17 C -0.049 4.049 18 C 0.271 3.729 19 N -0.442 5.442 20 C -0.064 4.064 21 C -0.117 4.117 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.121 0.879 26 H 0.051 0.949 27 H 0.033 0.967 28 H 0.048 0.952 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.056 0.944 32 H 0.266 0.734 33 H 0.158 0.842 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.375 -0.538 2.557 14.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.100 4.100 3 C -0.119 4.119 4 C -0.040 4.040 5 C 0.062 3.938 6 C -0.174 4.174 7 C -0.195 4.195 8 C -0.552 4.552 9 H 0.098 0.902 10 C -0.126 4.126 11 N -0.527 5.527 12 Si 0.693 3.307 13 H -0.212 1.212 14 H -0.229 1.229 15 H -0.162 1.162 16 C -0.073 4.073 17 C -0.052 4.052 18 C -0.043 4.043 19 N -0.118 5.118 20 C -0.067 4.067 21 C -0.174 4.174 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.139 0.861 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.175 0.825 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.334 -2.144 2.452 13.726 hybrid contribution -0.527 0.185 -1.070 1.207 sum -13.861 -1.959 1.382 14.067 Atomic orbital electron populations 1.20780 0.91454 1.02435 1.01969 1.19466 0.95538 0.92220 1.02813 1.21169 0.94338 0.96938 0.99428 1.20549 0.92435 0.97149 0.93879 1.17655 0.95453 0.87870 0.92791 1.21657 0.98647 0.99897 0.97182 1.22220 0.98233 1.00340 0.98734 1.20877 0.89632 1.42192 1.02472 0.90208 1.25069 0.94836 0.94690 0.98027 1.69885 1.13335 1.42850 1.26624 0.87415 0.83516 0.76937 0.82783 1.21223 1.22887 1.16233 1.21809 1.02666 0.89364 0.93437 1.16049 0.91428 0.87394 1.10338 1.25788 0.92783 0.92733 0.92996 1.81139 1.08857 1.11753 1.10028 1.19476 0.91329 0.95126 1.00751 1.20861 1.00077 0.94134 1.02281 0.91592 0.91507 0.91752 0.86091 0.92954 0.94801 0.93309 0.94313 0.94636 0.92474 0.92414 0.82465 0.91222 0.92134 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.60 36.00 0.35 -0.84 16 2 C -0.10 -1.49 5.87 -104.68 -0.61 -2.11 16 3 C -0.10 -1.65 8.22 -39.49 -0.32 -1.98 16 4 C -0.04 -0.78 2.51 -104.68 -0.26 -1.04 16 5 C 0.06 1.31 0.59 -156.81 -0.09 1.22 16 6 C -0.12 -2.09 8.30 37.16 0.31 -1.78 16 7 C -0.14 -2.72 7.71 37.16 0.29 -2.43 16 8 C -0.51 -13.06 7.38 -34.44 -0.25 -13.32 16 9 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 10 C 0.08 2.07 4.24 -17.82 -0.08 1.99 16 11 N -0.89 -26.02 13.96 55.43 0.77 -25.24 16 12 Si 0.86 20.87 22.07 -169.99 -3.75 17.12 16 13 H -0.28 -6.87 7.00 56.52 0.40 -6.47 16 14 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 15 H -0.24 -5.29 4.52 56.52 0.26 -5.04 16 16 C -0.05 -1.10 6.41 -39.16 -0.25 -1.35 16 17 C -0.05 -0.91 5.73 -106.93 -0.61 -1.53 16 18 C 0.27 5.29 13.80 -22.47 -0.31 4.98 16 19 N -0.44 -9.04 18.54 41.84 0.78 -8.27 16 20 C -0.06 -1.02 5.91 -104.21 -0.62 -1.63 16 21 C -0.12 -1.47 9.20 36.00 0.33 -1.14 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.62 5.94 -51.93 -0.31 0.31 16 24 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 25 H 0.12 1.74 7.05 -52.49 -0.37 1.37 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.03 0.51 7.87 -51.93 -0.41 0.10 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.04 0.83 2.58 -51.93 -0.13 0.69 16 30 H 0.03 0.58 6.84 -51.93 -0.36 0.23 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.16 3.75 5.62 -52.49 -0.29 3.46 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.79 7.09 -51.93 -0.37 0.42 16 36 H 0.07 0.75 5.94 -51.92 -0.31 0.44 16 LS Contribution 282.69 15.07 4.26 4.26 Total: -1.00 -28.58 282.69 -4.87 -33.45 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.79 Total: -0.36 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -2.14 Total: -20.96 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 1.55 Total: -33.51 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -3.75 Total: 17.12 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.58 -4.87 -33.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260060895.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.412 kcal (2) G-P(sol) polarization free energy of solvation -28.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds