Wall clock time and date at job start Mon Mar 30 2020 06:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38385 * 119.92394 * 2 1 4 4 C 1.38341 * 120.30763 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.92720 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47265 * 67.51092 * 5 4 3 7 7 C 1.52999 * 109.47075 * 307.50885 * 5 4 3 8 8 C 1.50699 * 109.47168 * 187.51108 * 5 4 3 9 9 H 1.08000 * 119.99774 * 244.83360 * 8 5 4 10 10 C 1.37874 * 119.99976 * 64.55463 * 8 5 4 11 11 N 1.31517 * 120.00210 * 181.57813 * 10 8 5 12 12 Si 1.86797 * 120.00298 * 1.58018 * 10 8 5 13 13 H 1.48507 * 109.47223 * 92.50696 * 12 10 8 14 14 H 1.48503 * 109.47625 * 212.50919 * 12 10 8 15 15 H 1.48501 * 109.46848 * 332.50971 * 12 10 8 16 16 C 1.37978 * 120.15056 * 0.27557 * 4 3 2 17 17 C 1.39616 * 119.83867 * 359.45781 * 16 4 3 18 18 C 1.43200 * 120.14632 * 180.24974 * 17 16 4 19 19 N 4.80112 * 134.70680 * 180.02562 * 2 1 3 20 20 C 1.37926 * 119.92471 * 180.02562 * 2 1 3 21 21 C 1.50697 * 120.07889 * 359.95938 * 20 2 1 22 22 H 1.09004 * 109.47188 * 89.99629 * 1 2 3 23 23 H 1.08995 * 109.47539 * 209.99667 * 1 2 3 24 24 H 1.08997 * 109.47188 * 330.00112 * 1 2 3 25 25 H 1.07999 * 119.84765 * 0.04200 * 3 2 1 26 26 H 1.08997 * 109.47310 * 180.02562 * 6 5 4 27 27 H 1.08999 * 109.47020 * 300.00454 * 6 5 4 28 28 H 1.09005 * 109.47072 * 60.00027 * 6 5 4 29 29 H 1.09006 * 109.47263 * 295.88504 * 7 5 4 30 30 H 1.08998 * 109.46895 * 55.87856 * 7 5 4 31 31 H 1.09000 * 109.47381 * 175.87851 * 7 5 4 32 32 H 0.96996 * 120.00254 * 180.02562 * 11 10 8 33 33 H 1.07992 * 120.07712 * 179.72710 * 16 4 3 34 34 H 1.09002 * 109.47075 * 89.99626 * 21 20 2 35 35 H 1.09000 * 109.47591 * 210.00051 * 21 20 2 36 36 H 1.09009 * 109.46724 * 329.99937 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1994 0.0000 4 6 3.5807 1.2086 -0.0005 5 6 4.3237 2.5197 0.0001 6 6 4.0957 3.2346 1.3334 7 6 3.8106 3.3972 -1.1434 8 6 5.7968 2.2623 -0.1864 9 1 6.4918 2.5060 0.6035 10 6 6.2567 1.7104 -1.3632 11 7 7.5383 1.4570 -1.5141 12 14 5.0593 1.3225 -2.7435 13 1 4.9798 2.4806 -3.6699 14 1 5.5306 0.1260 -3.4862 15 1 3.7155 1.0528 -2.1719 16 6 4.2817 0.0202 -0.0068 17 6 3.5915 -1.1934 -0.0012 18 6 4.3124 -2.4307 -0.0022 19 7 4.8844 -3.4122 -0.0015 20 6 2.1950 -1.1954 -0.0005 21 6 1.4416 -2.5005 -0.0002 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5137 24 1 -0.3633 0.8900 0.5138 25 1 1.6536 2.1325 0.0007 26 1 4.6328 4.1830 1.3336 27 1 3.0303 3.4207 1.4683 28 1 4.4613 2.6094 2.1480 29 1 4.0388 2.9213 -2.0972 30 1 2.7321 3.5230 -1.0490 31 1 4.2954 4.3725 -1.0987 32 1 7.8619 1.0690 -2.3421 33 1 5.3615 0.0288 -0.0117 34 1 1.2593 -2.8150 -1.0278 35 1 2.0310 -3.2602 0.5132 36 1 0.4894 -2.3702 0.5143 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260060895.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:25 Heat of formation + Delta-G solvation = 34.084641 kcal Electronic energy + Delta-G solvation = -17690.433197 eV Core-core repulsion = 15138.968739 eV Total energy + Delta-G solvation = -2551.464458 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.15341 -38.18147 -37.22233 -34.12851 -33.63158 -32.47018 -28.52647 -28.12048 -27.82997 -26.40852 -24.20598 -22.54029 -20.52105 -19.12788 -17.82061 -17.26945 -16.70402 -16.42198 -15.56908 -15.19307 -14.88428 -14.44063 -14.36484 -14.23289 -14.15303 -13.94520 -13.85023 -13.53098 -13.47685 -13.15756 -12.72985 -12.66816 -12.37657 -12.16778 -12.09948 -11.97694 -11.86780 -11.43704 -10.94199 -10.85585 -10.66601 -9.58535 -9.07760 -8.30642 -6.32291 -0.10302 0.52342 1.28905 1.39990 1.44040 1.55432 1.94739 2.31701 2.92020 2.95914 3.06705 3.91697 3.96699 4.19549 4.29950 4.46032 4.52526 4.61139 4.67639 4.73511 4.82004 4.89499 4.98539 5.02006 5.07979 5.11256 5.14308 5.19937 5.23032 5.38189 5.50667 5.58984 5.63213 5.69877 5.77567 5.94962 6.15668 6.36880 6.40828 6.78189 7.33737 8.84561 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.019577 B = 0.011566 C = 0.008947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.899287 B = 2420.364275 C = 3128.648597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.088 4.088 3 C -0.090 4.090 4 C -0.059 4.059 5 C 0.057 3.943 6 C -0.112 4.112 7 C -0.139 4.139 8 C -0.500 4.500 9 H 0.036 0.964 10 C 0.027 3.973 11 N -0.948 5.948 12 Si 0.914 3.086 13 H -0.282 1.282 14 H -0.327 1.327 15 H -0.200 1.200 16 C -0.083 4.083 17 C -0.064 4.064 18 C 0.279 3.721 19 N -0.470 5.470 20 C -0.055 4.055 21 C -0.117 4.117 22 H 0.082 0.918 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.156 0.844 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.036 0.964 29 H 0.020 0.980 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.260 0.740 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.843 -0.007 2.712 20.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.088 4.088 3 C -0.109 4.109 4 C -0.060 4.060 5 C 0.057 3.943 6 C -0.170 4.170 7 C -0.196 4.196 8 C -0.538 4.538 9 H 0.054 0.946 10 C -0.170 4.170 11 N -0.589 5.589 12 Si 0.744 3.256 13 H -0.209 1.209 14 H -0.258 1.258 15 H -0.122 1.122 16 C -0.103 4.103 17 C -0.067 4.067 18 C -0.034 4.034 19 N -0.146 5.146 20 C -0.058 4.058 21 C -0.173 4.173 22 H 0.100 0.900 23 H 0.104 0.896 24 H 0.103 0.897 25 H 0.173 0.827 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.038 0.962 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.129 0.871 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.839 -1.592 2.632 19.089 hybrid contribution 1.158 0.020 -0.975 1.514 sum -17.681 -1.573 1.657 17.828 Atomic orbital electron populations 1.20915 0.87524 1.04524 1.03588 1.19982 0.98083 0.90825 0.99888 1.21484 0.92583 0.99216 0.97575 1.20332 0.94065 0.95361 0.96208 1.17677 0.92078 0.89551 0.95022 1.21613 1.01178 0.99050 0.95114 1.22186 1.01105 0.99579 0.96701 1.21193 0.92357 1.39781 1.00440 0.94579 1.25715 0.95771 0.94971 1.00528 1.70050 1.15749 1.45910 1.27154 0.86640 0.83635 0.75481 0.79879 1.20932 1.25796 1.12197 1.21436 1.00674 0.91298 0.96911 1.16166 0.92938 0.85915 1.11716 1.26096 0.92304 0.92768 0.92245 1.81124 1.09458 1.12842 1.11217 1.19920 0.89917 0.97470 0.98489 1.20971 1.00969 0.91921 1.03457 0.89964 0.89586 0.89709 0.82679 0.93264 0.90775 0.94527 0.96159 0.90147 0.92496 0.93154 0.87118 0.89944 0.93163 0.87326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 9.60 71.23 0.68 -0.84 16 2 C -0.09 -2.10 5.87 -19.91 -0.12 -2.22 16 3 C -0.09 -2.49 8.22 22.33 0.18 -2.31 16 4 C -0.06 -2.20 2.51 -19.90 -0.05 -2.25 16 5 C 0.06 2.31 0.59 -53.68 -0.03 2.28 16 6 C -0.11 -3.79 8.30 71.98 0.60 -3.19 16 7 C -0.14 -5.01 7.71 71.98 0.55 -4.45 16 8 C -0.50 -26.54 7.38 25.60 0.19 -26.35 16 9 H 0.04 2.16 7.99 -2.91 -0.02 2.14 16 10 C 0.03 1.54 4.24 84.65 0.36 1.90 16 11 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 12 Si 0.91 44.19 22.07 68.60 1.51 45.70 16 13 H -0.28 -13.27 7.00 99.48 0.70 -12.57 16 14 H -0.33 -17.10 7.11 99.48 0.71 -16.39 16 15 H -0.20 -8.34 4.52 99.48 0.45 -7.89 16 16 C -0.08 -3.48 6.41 22.54 0.14 -3.34 16 17 C -0.06 -2.34 5.73 -21.36 -0.12 -2.46 16 18 C 0.28 11.04 13.80 88.33 1.22 12.26 16 19 N -0.47 -19.68 18.54 19.00 0.35 -19.33 16 20 C -0.06 -1.55 5.91 -19.60 -0.12 -1.66 16 21 C -0.12 -2.43 9.20 71.23 0.66 -1.77 16 22 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 23 H 0.09 0.92 5.94 -2.39 -0.01 0.91 16 24 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 25 H 0.16 3.25 7.05 -2.91 -0.02 3.23 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 27 H 0.07 1.90 7.87 -2.39 -0.02 1.88 16 28 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.02 0.80 2.58 -2.38 -0.01 0.80 16 30 H 0.08 2.17 6.84 -2.39 -0.02 2.15 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 33 H 0.11 5.67 5.62 -2.91 -0.02 5.66 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.05 1.17 7.09 -2.39 -0.02 1.15 16 36 H 0.11 1.51 5.94 -2.38 -0.01 1.50 16 Total: -1.00 -68.48 282.69 7.13 -61.35 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 0.82 Total: 5.85 kcal Atomic # 6 Polarization: -38.56 SS G_CDS: 4.15 Total: -34.42 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: 0.65 Total: -78.49 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.51 Total: 45.70 kcal Total: -68.48 7.13 -61.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260060895.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.435 kcal (2) G-P(sol) polarization free energy of solvation -68.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds