Wall clock time and date at job start Mon Mar 30 2020 05:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99956 * 2 1 4 4 H 1.48500 * 109.47251 * 240.00120 * 3 2 1 5 5 H 1.48499 * 109.47131 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46983 * 120.00267 * 3 2 1 7 7 C 1.37879 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99589 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99754 * 359.97438 * 7 2 1 10 10 H 1.08998 * 115.56150 * 34.25554 * 9 7 2 11 11 C 1.53149 * 117.55304 * 248.43746 * 9 7 2 12 12 C 1.52336 * 117.51212 * 180.02562 * 9 7 2 13 13 C 1.53290 * 128.80417 * 349.61089 * 12 9 7 14 14 N 1.48104 * 85.92373 * 196.85412 * 13 12 9 15 15 C 1.46893 * 111.00266 * 137.12365 * 14 13 12 16 16 C 1.50697 * 109.47435 * 90.41146 * 15 14 13 17 17 C 1.38233 * 120.00202 * 269.73305 * 16 15 14 18 18 C 1.38231 * 120.00056 * 179.78659 * 17 16 15 19 19 C 1.38234 * 120.00110 * 0.45570 * 18 17 16 20 20 C 1.38236 * 120.00051 * 359.77339 * 19 18 17 21 21 C 1.38238 * 119.99998 * 0.02562 * 20 19 18 22 22 C 1.48100 * 90.95869 * 24.14924 * 14 13 12 23 23 H 0.97003 * 120.00448 * 359.97438 * 1 2 3 24 24 H 1.09003 * 117.51932 * 145.14299 * 11 9 7 25 25 H 1.09001 * 117.52021 * 0.02562 * 11 9 7 26 26 H 1.08998 * 113.80223 * 311.10366 * 13 12 9 27 27 H 1.08998 * 113.79878 * 82.60504 * 13 12 9 28 28 H 1.09000 * 109.47551 * 210.41361 * 15 14 13 29 29 H 1.09008 * 109.46967 * 330.41428 * 15 14 13 30 30 H 1.08001 * 120.00080 * 359.97438 * 17 16 15 31 31 H 1.08008 * 120.00288 * 180.25138 * 18 17 16 32 32 H 1.08000 * 120.00112 * 179.79025 * 19 18 17 33 33 H 1.07999 * 120.00674 * 179.97438 * 20 19 18 34 34 H 1.07998 * 120.00404 * 179.97438 * 21 20 19 35 35 H 1.09004 * 113.80529 * 221.60190 * 22 14 13 36 36 H 1.08993 * 113.91065 * 90.11314 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.3117 -2.4999 -0.5537 11 6 1.3293 -3.3624 1.2620 12 6 2.0691 -3.7841 -0.0005 13 6 3.5762 -3.9634 -0.2160 14 7 3.2641 -5.3900 -0.4627 15 6 4.0202 -5.9030 -1.6128 16 6 5.3338 -6.4692 -1.1385 17 6 6.4507 -5.6579 -1.0671 18 6 7.6545 -6.1762 -0.6278 19 6 7.7437 -7.5081 -0.2687 20 6 6.6279 -8.3206 -0.3445 21 6 5.4231 -7.8013 -0.7799 22 6 1.8770 -5.0453 -0.8505 23 1 -0.4851 0.8400 0.0004 24 1 0.4416 -3.9310 1.5393 25 1 1.9258 -2.9862 2.0932 26 1 3.9608 -3.4396 -1.0910 27 1 4.1720 -3.7922 0.6805 28 1 3.4443 -6.6858 -2.1064 29 1 4.2073 -5.0913 -2.3160 30 1 6.3821 -4.6183 -1.3517 31 1 8.5263 -5.5413 -0.5681 32 1 8.6851 -7.9138 0.0714 33 1 6.6976 -9.3613 -0.0644 34 1 4.5514 -8.4362 -0.8396 35 1 1.1267 -5.7310 -0.4568 36 1 1.7529 -4.8438 -1.9145 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260066781.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:24 Heat of formation + Delta-G solvation = 83.185144 kcal Electronic energy + Delta-G solvation = -16556.242979 eV Core-core repulsion = 14006.907678 eV Total energy + Delta-G solvation = -2549.335301 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.76127 -38.64828 -34.78648 -32.40827 -31.36872 -30.82951 -27.16445 -25.77325 -25.16207 -22.70875 -22.46469 -20.86118 -20.22429 -17.61252 -16.73092 -16.40152 -15.32328 -15.31516 -15.10053 -14.37655 -14.18479 -14.00560 -13.35631 -13.04631 -12.79687 -12.52552 -12.18925 -12.06234 -11.33491 -11.19999 -11.00136 -10.91575 -10.78919 -10.65784 -10.35071 -9.83605 -9.47393 -9.05212 -8.93323 -8.85007 -8.58265 -8.33942 -7.92168 -6.10727 -4.09806 1.41755 1.46884 3.28094 3.33177 3.35476 3.80937 4.35734 4.49015 4.83658 4.89640 5.01522 5.06776 5.16063 5.28088 5.41591 5.42262 5.54534 5.62403 5.68619 5.77809 5.96706 6.06845 6.09799 6.14337 6.36795 6.49485 6.50283 6.54684 6.65649 6.71353 6.84164 6.88747 6.93464 7.06639 7.12623 7.56843 7.61756 7.86596 8.40269 8.91364 9.50217 10.99865 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032858 B = 0.004907 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.947865 B = 5704.820805 C = 6290.186362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.492 4.492 8 H 0.058 0.942 9 C 0.051 3.949 10 H 0.078 0.922 11 C -0.172 4.172 12 C -0.196 4.196 13 C 0.057 3.943 14 N -0.473 5.473 15 C 0.053 3.947 16 C -0.062 4.062 17 C -0.112 4.112 18 C -0.121 4.121 19 C -0.129 4.129 20 C -0.124 4.124 21 C -0.105 4.105 22 C 0.042 3.958 23 H 0.263 0.737 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.523 -12.729 -2.868 16.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.530 4.530 8 H 0.076 0.924 9 C 0.032 3.968 10 H 0.096 0.904 11 C -0.210 4.210 12 C -0.197 4.197 13 C -0.071 4.071 14 N -0.195 5.195 15 C -0.075 4.075 16 C -0.062 4.062 17 C -0.130 4.130 18 C -0.139 4.139 19 C -0.147 4.147 20 C -0.142 4.142 21 C -0.123 4.123 22 C -0.086 4.086 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.095 0.905 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.475 -13.097 -2.385 16.940 hybrid contribution 0.421 1.326 -0.563 1.501 sum 10.897 -11.771 -2.948 16.309 Atomic orbital electron populations 1.69948 1.06099 1.27020 1.49284 1.25022 0.94851 0.99269 0.94432 0.86612 0.79607 0.82767 0.78774 1.20110 1.21145 1.20067 1.20563 0.92581 0.89225 1.50592 0.92352 1.19847 0.95669 0.87328 0.93933 0.90418 1.22860 0.99732 1.05972 0.92399 1.22568 0.93681 0.99146 1.04329 1.23295 0.96494 0.86786 1.00557 1.68578 1.02678 1.18099 1.30157 1.21652 0.92547 0.99667 0.93658 1.19785 0.94561 0.93669 0.98229 1.21096 0.92612 0.99577 0.99740 1.21101 0.97669 0.95510 0.99666 1.21083 0.98450 0.94181 1.00990 1.21100 0.93125 0.99624 1.00352 1.21011 0.97435 0.95037 0.98844 1.23400 0.91204 0.95916 0.98053 0.92696 0.91425 0.90321 0.91668 0.90673 0.90622 0.93071 0.86275 0.86337 0.86514 0.86403 0.86255 0.90507 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.56 13.12 55.43 0.73 -24.83 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.49 -13.42 9.06 -34.44 -0.31 -13.73 16 8 H 0.06 1.56 7.59 -52.49 -0.40 1.16 16 9 C 0.05 1.29 5.58 -92.03 -0.51 0.78 16 10 H 0.08 2.11 7.90 -51.93 -0.41 1.70 16 11 C -0.17 -3.92 10.23 -27.02 -0.28 -4.19 16 12 C -0.20 -4.16 3.06 -155.00 -0.48 -4.64 16 13 C 0.06 1.09 7.54 -3.01 -0.02 1.06 16 14 N -0.47 -8.19 6.14 -243.06 -1.49 -9.68 16 15 C 0.05 0.77 4.93 -4.98 -0.02 0.75 16 16 C -0.06 -0.87 5.44 -104.62 -0.57 -1.43 16 17 C -0.11 -1.50 9.70 -39.59 -0.38 -1.88 16 18 C -0.12 -1.44 10.05 -39.59 -0.40 -1.84 16 19 C -0.13 -1.43 10.05 -39.58 -0.40 -1.83 16 20 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 21 C -0.10 -1.34 9.70 -39.58 -0.38 -1.72 16 22 C 0.04 0.76 7.96 -3.01 -0.02 0.73 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 25 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 26 H 0.07 1.23 7.48 -51.93 -0.39 0.85 16 27 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 28 H 0.08 0.99 8.03 -51.93 -0.42 0.58 16 29 H 0.05 0.74 7.33 -51.92 -0.38 0.36 16 30 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 1.08 7.93 -51.93 -0.41 0.66 16 LS Contribution 306.35 15.07 4.62 4.62 Total: -1.00 -28.76 306.35 -10.79 -39.55 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.35 Total: 2.39 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -4.28 Total: -28.01 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: -0.76 Total: -34.51 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.76 -10.79 -39.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260066781.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.738 kcal (2) G-P(sol) polarization free energy of solvation -28.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds