Wall clock time and date at job start Mon Mar 30 2020 05:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99956 * 2 1 4 4 H 1.48500 * 109.47251 * 240.00120 * 3 2 1 5 5 H 1.48499 * 109.47131 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46983 * 120.00267 * 3 2 1 7 7 C 1.37879 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99589 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99754 * 359.97438 * 7 2 1 10 10 H 1.08998 * 115.56150 * 34.25554 * 9 7 2 11 11 C 1.53149 * 117.55304 * 248.43746 * 9 7 2 12 12 C 1.52336 * 117.51212 * 180.02562 * 9 7 2 13 13 C 1.53290 * 128.80417 * 349.61089 * 12 9 7 14 14 N 1.48104 * 85.92373 * 196.85412 * 13 12 9 15 15 C 1.46893 * 111.00266 * 137.12365 * 14 13 12 16 16 C 1.50697 * 109.47435 * 90.41146 * 15 14 13 17 17 C 1.38233 * 120.00202 * 269.73305 * 16 15 14 18 18 C 1.38231 * 120.00056 * 179.78659 * 17 16 15 19 19 C 1.38234 * 120.00110 * 0.45570 * 18 17 16 20 20 C 1.38236 * 120.00051 * 359.77339 * 19 18 17 21 21 C 1.38238 * 119.99998 * 0.02562 * 20 19 18 22 22 C 1.48100 * 90.95869 * 24.14924 * 14 13 12 23 23 H 0.97003 * 120.00448 * 359.97438 * 1 2 3 24 24 H 1.09003 * 117.51932 * 145.14299 * 11 9 7 25 25 H 1.09001 * 117.52021 * 0.02562 * 11 9 7 26 26 H 1.08998 * 113.80223 * 311.10366 * 13 12 9 27 27 H 1.08998 * 113.79878 * 82.60504 * 13 12 9 28 28 H 1.09000 * 109.47551 * 210.41361 * 15 14 13 29 29 H 1.09008 * 109.46967 * 330.41428 * 15 14 13 30 30 H 1.08001 * 120.00080 * 359.97438 * 17 16 15 31 31 H 1.08008 * 120.00288 * 180.25138 * 18 17 16 32 32 H 1.08000 * 120.00112 * 179.79025 * 19 18 17 33 33 H 1.07999 * 120.00674 * 179.97438 * 20 19 18 34 34 H 1.07998 * 120.00404 * 179.97438 * 21 20 19 35 35 H 1.09004 * 113.80529 * 221.60190 * 22 14 13 36 36 H 1.08993 * 113.91065 * 90.11314 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.3117 -2.4999 -0.5537 11 6 1.3293 -3.3624 1.2620 12 6 2.0691 -3.7841 -0.0005 13 6 3.5762 -3.9634 -0.2160 14 7 3.2641 -5.3900 -0.4627 15 6 4.0202 -5.9030 -1.6128 16 6 5.3338 -6.4692 -1.1385 17 6 6.4507 -5.6579 -1.0671 18 6 7.6545 -6.1762 -0.6278 19 6 7.7437 -7.5081 -0.2687 20 6 6.6279 -8.3206 -0.3445 21 6 5.4231 -7.8013 -0.7799 22 6 1.8770 -5.0453 -0.8505 23 1 -0.4851 0.8400 0.0004 24 1 0.4416 -3.9310 1.5393 25 1 1.9258 -2.9862 2.0932 26 1 3.9608 -3.4396 -1.0910 27 1 4.1720 -3.7922 0.6805 28 1 3.4443 -6.6858 -2.1064 29 1 4.2073 -5.0913 -2.3160 30 1 6.3821 -4.6183 -1.3517 31 1 8.5263 -5.5413 -0.5681 32 1 8.6851 -7.9138 0.0714 33 1 6.6976 -9.3613 -0.0644 34 1 4.5514 -8.4362 -0.8396 35 1 1.1267 -5.7310 -0.4568 36 1 1.7529 -4.8438 -1.9145 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260066781.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:24 Heat of formation + Delta-G solvation = 67.338525 kcal Electronic energy + Delta-G solvation = -16556.930140 eV Core-core repulsion = 14006.907678 eV Total energy + Delta-G solvation = -2550.022461 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.13141 -39.75404 -36.47527 -34.20397 -32.71098 -31.73104 -28.47521 -27.53202 -26.87694 -23.98660 -23.38382 -22.42978 -21.66693 -19.29106 -18.40488 -17.67862 -16.87618 -16.51047 -16.31535 -15.95312 -15.55735 -15.45143 -14.56458 -14.28412 -14.14225 -13.74335 -13.62541 -13.40356 -13.00825 -12.86957 -12.79649 -12.37466 -12.26720 -11.88219 -11.73881 -11.54191 -11.27522 -10.99259 -10.52907 -10.33737 -9.77174 -9.59912 -9.51483 -8.19255 -6.24262 0.47918 0.55322 1.41692 1.43174 1.51426 2.40027 2.75757 2.98719 3.19032 3.55190 3.67083 3.87891 3.99138 4.05999 4.20787 4.26360 4.34863 4.46093 4.57795 4.62755 4.70842 4.78234 4.79932 4.83330 4.91385 5.05166 5.14601 5.18670 5.25111 5.30117 5.34067 5.51789 5.62168 5.65669 5.77432 5.78997 6.14217 6.20473 6.34812 6.81867 7.38447 8.92061 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032858 B = 0.004907 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.947865 B = 5704.820805 C = 6290.186362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.014 3.986 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.506 4.506 8 H 0.057 0.943 9 C 0.015 3.985 10 H 0.050 0.950 11 C -0.170 4.170 12 C -0.185 4.185 13 C 0.062 3.938 14 N -0.471 5.471 15 C 0.056 3.944 16 C -0.082 4.082 17 C -0.130 4.130 18 C -0.129 4.129 19 C -0.129 4.129 20 C -0.127 4.127 21 C -0.116 4.116 22 C 0.050 3.950 23 H 0.264 0.736 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.114 0.886 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.129 0.871 35 H 0.091 0.909 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.349 -14.059 -2.941 18.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.185 4.185 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.543 4.543 8 H 0.075 0.925 9 C -0.004 4.004 10 H 0.068 0.932 11 C -0.207 4.207 12 C -0.186 4.186 13 C -0.067 4.067 14 N -0.193 5.193 15 C -0.072 4.072 16 C -0.083 4.083 17 C -0.149 4.149 18 C -0.147 4.147 19 C -0.147 4.147 20 C -0.144 4.144 21 C -0.134 4.134 22 C -0.078 4.078 23 H 0.073 0.927 24 H 0.098 0.902 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.068 0.932 30 H 0.132 0.868 31 H 0.155 0.845 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.147 0.853 35 H 0.109 0.891 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.315 -14.443 -2.461 19.139 hybrid contribution -0.101 1.634 -0.540 1.724 sum 12.214 -12.808 -3.001 17.951 Atomic orbital electron populations 1.70072 1.07616 1.27828 1.50766 1.25846 0.95661 1.02782 0.94208 0.85571 0.78359 0.78444 0.79085 1.19202 1.20755 1.19482 1.20865 0.92690 0.90490 1.50287 0.92457 1.19675 0.95772 0.88816 0.96099 0.93223 1.22774 1.00539 1.05410 0.92018 1.22710 0.94983 0.98109 1.02769 1.23231 0.94755 0.88306 1.00383 1.68534 1.02486 1.16449 1.31817 1.21667 0.93008 0.99989 0.92565 1.19803 0.94251 0.94481 0.99738 1.21219 0.93419 0.99570 1.00667 1.21389 0.97723 0.96390 0.99191 1.21468 0.99593 0.93791 0.99861 1.21454 0.92602 1.00986 0.99402 1.21225 0.98558 0.94719 0.98945 1.23436 0.92134 0.94155 0.98080 0.92688 0.90226 0.91116 0.91564 0.91291 0.88969 0.93210 0.86751 0.84548 0.83801 0.83863 0.85337 0.89111 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.63 13.12 21.45 0.28 -54.35 16 2 C 0.01 0.79 5.46 84.66 0.46 1.26 16 3 Si 0.96 43.40 29.54 68.60 2.03 45.43 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.51 -28.12 9.06 25.60 0.23 -27.89 16 8 H 0.06 3.10 7.59 -2.91 -0.02 3.08 16 9 C 0.02 0.80 5.58 -11.71 -0.07 0.73 16 10 H 0.05 2.81 7.90 -2.39 -0.02 2.80 16 11 C -0.17 -7.81 10.23 30.41 0.31 -7.50 16 12 C -0.18 -7.81 3.06 -52.41 -0.16 -7.97 16 13 C 0.06 2.33 7.54 86.17 0.65 2.98 16 14 N -0.47 -15.59 6.14 -922.91 -5.67 -21.26 16 15 C 0.06 1.53 4.93 85.56 0.42 1.95 16 16 C -0.08 -2.17 5.44 -19.87 -0.11 -2.28 16 17 C -0.13 -3.34 9.70 22.27 0.22 -3.13 16 18 C -0.13 -2.80 10.05 22.27 0.22 -2.58 16 19 C -0.13 -2.49 10.05 22.27 0.22 -2.26 16 20 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 21 C -0.12 -2.71 9.70 22.27 0.22 -2.49 16 22 C 0.05 1.72 7.96 86.17 0.69 2.40 16 23 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 24 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 25 H 0.07 3.32 8.14 -2.39 -0.02 3.30 16 26 H 0.07 2.49 7.48 -2.39 -0.02 2.47 16 27 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.09 2.22 8.03 -2.39 -0.02 2.20 16 29 H 0.05 1.38 7.33 -2.38 -0.02 1.37 16 30 H 0.11 2.93 8.06 -2.91 -0.02 2.90 16 31 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 32 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 34 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 35 H 0.09 2.89 8.14 -2.39 -0.02 2.88 16 36 H 0.07 2.41 7.93 -2.39 -0.02 2.39 16 Total: -1.00 -61.94 306.35 1.21 -60.72 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 1.04 Total: 18.53 kcal Atomic # 6 Polarization: -52.61 SS G_CDS: 3.53 Total: -49.08 kcal Atomic # 7 Polarization: -70.22 SS G_CDS: -5.38 Total: -75.61 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -61.94 1.21 -60.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260066781.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.062 kcal (2) G-P(sol) polarization free energy of solvation -61.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds