Wall clock time and date at job start Mon Mar 30 2020 05:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00071 * 2 1 4 4 H 1.48502 * 109.47514 * 270.00197 * 3 2 1 5 5 H 1.48505 * 109.47447 * 30.00160 * 3 2 1 6 6 H 1.48502 * 109.47117 * 150.00080 * 3 2 1 7 7 C 1.37876 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99762 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00066 * 180.02562 * 7 2 1 10 10 H 1.09005 * 115.57889 * 325.59647 * 9 7 2 11 11 C 1.53148 * 117.52001 * 111.39023 * 9 7 2 12 12 C 1.52334 * 117.51561 * 179.81790 * 9 7 2 13 13 C 1.53288 * 128.80286 * 10.43220 * 12 9 7 14 14 N 1.48097 * 85.92249 * 116.52622 * 13 12 9 15 15 C 1.46901 * 111.00269 * 137.12706 * 14 13 12 16 16 C 1.50690 * 109.47030 * 70.41086 * 15 14 13 17 17 C 1.38243 * 119.99903 * 269.72480 * 16 15 14 18 18 C 1.38233 * 119.99847 * 179.79026 * 17 16 15 19 19 C 1.38233 * 120.00161 * 0.44171 * 18 17 16 20 20 C 1.38239 * 120.00304 * 359.81461 * 19 18 17 21 21 C 1.38234 * 120.00511 * 90.00050 * 16 15 14 22 22 C 1.48101 * 90.96086 * 24.14811 * 14 13 12 23 23 H 0.97003 * 119.99414 * 359.97438 * 1 2 3 24 24 H 1.09003 * 117.51603 * 359.97438 * 11 9 7 25 25 H 1.09001 * 117.51896 * 214.88025 * 11 9 7 26 26 H 1.09009 * 113.79745 * 230.77208 * 13 12 9 27 27 H 1.08991 * 113.80211 * 2.27314 * 13 12 9 28 28 H 1.09002 * 109.47288 * 190.40963 * 15 14 13 29 29 H 1.09000 * 109.46749 * 310.40823 * 15 14 13 30 30 H 1.07995 * 119.99859 * 359.97438 * 17 16 15 31 31 H 1.08001 * 120.00071 * 180.27073 * 18 17 16 32 32 H 1.07997 * 120.00258 * 179.83025 * 19 18 17 33 33 H 1.07995 * 120.00612 * 179.97438 * 20 19 18 34 34 H 1.08002 * 119.99958 * 359.97438 * 21 16 15 35 35 H 1.08997 * 113.79944 * 221.60070 * 22 14 13 36 36 H 1.09002 * 113.80073 * 90.10506 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.9824 -0.3825 -0.5548 11 6 4.2186 -1.6903 1.2646 12 6 4.2152 -2.5452 0.0037 13 6 3.6171 -3.9404 -0.2093 14 7 4.4690 -4.0052 -1.4190 15 6 5.1097 -5.3214 -1.5418 16 6 4.0709 -6.3547 -1.8940 17 6 3.4055 -7.0354 -0.8915 18 6 2.4495 -7.9802 -1.2145 19 6 2.1655 -8.2509 -2.5400 20 6 2.8346 -7.5741 -3.5426 21 6 3.7875 -6.6262 -3.2195 22 6 5.4043 -3.0112 -0.8440 23 1 -0.4849 0.8401 0.0004 24 1 3.5936 -2.0163 2.0961 25 1 5.1545 -1.2051 1.5416 26 1 3.8929 -4.6596 0.5619 27 1 2.5485 -3.9328 -0.4238 28 1 5.8666 -5.2854 -2.3254 29 1 5.5795 -5.5865 -0.5947 30 1 3.6304 -6.8269 0.1440 31 1 1.9265 -8.5088 -0.4313 32 1 1.4205 -8.9910 -2.7924 33 1 2.6131 -7.7859 -4.5781 34 1 4.3102 -6.0973 -4.0027 35 1 5.7515 -2.2676 -1.5613 36 1 6.2130 -3.4534 -0.2620 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260066785.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:27 Heat of formation + Delta-G solvation = 86.982626 kcal Electronic energy + Delta-G solvation = -16753.862304 eV Core-core repulsion = 14204.691675 eV Total energy + Delta-G solvation = -2549.170629 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.89390 -38.62354 -34.92233 -32.34525 -31.47533 -30.79337 -27.32062 -25.90480 -25.31914 -22.66273 -22.43277 -20.67551 -20.30628 -17.59616 -16.91377 -16.63895 -15.37214 -15.31321 -15.16498 -14.45983 -14.27361 -13.80605 -13.32093 -12.99386 -12.81409 -12.49155 -12.38647 -12.09341 -11.63775 -11.34590 -11.02105 -10.92534 -10.80790 -10.70237 -9.96428 -9.80216 -9.55597 -9.18640 -8.93051 -8.79693 -8.58679 -8.39970 -8.13719 -6.09596 -4.05697 1.44961 1.51877 3.30421 3.38224 3.43137 3.84247 4.41017 4.44198 4.79782 4.84434 4.95707 5.08296 5.16995 5.24280 5.25060 5.38013 5.57529 5.62215 5.69022 5.74934 5.80910 5.93082 6.09465 6.14721 6.15913 6.43516 6.51032 6.55851 6.59777 6.65369 6.69207 6.76104 6.80852 6.92572 7.10759 7.20240 7.55842 7.73842 8.54464 8.95804 9.52817 11.02374 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.028996 B = 0.005567 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.405036 B = 5028.067193 C = 5482.569328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.483 4.483 8 H 0.077 0.923 9 C 0.028 3.972 10 H 0.065 0.935 11 C -0.200 4.200 12 C -0.178 4.178 13 C 0.053 3.947 14 N -0.463 5.463 15 C 0.056 3.944 16 C -0.070 4.070 17 C -0.112 4.112 18 C -0.121 4.121 19 C -0.126 4.126 20 C -0.123 4.123 21 C -0.101 4.101 22 C 0.038 3.962 23 H 0.265 0.735 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.043 0.957 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.082 0.918 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.367 -13.053 -3.014 16.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.520 4.520 8 H 0.095 0.905 9 C 0.009 3.991 10 H 0.083 0.917 11 C -0.238 4.238 12 C -0.179 4.179 13 C -0.075 4.075 14 N -0.185 5.185 15 C -0.072 4.072 16 C -0.071 4.071 17 C -0.130 4.130 18 C -0.139 4.139 19 C -0.144 4.144 20 C -0.141 4.141 21 C -0.119 4.119 22 C -0.090 4.090 23 H 0.075 0.925 24 H 0.104 0.896 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.110 0.890 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.100 0.900 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.918 -12.839 -3.678 16.059 hybrid contribution 0.764 0.562 0.823 1.256 sum 9.683 -12.277 -2.854 15.894 Atomic orbital electron populations 1.69903 1.06373 1.27168 1.49846 1.24997 0.94689 0.99195 0.94024 0.86743 0.80507 0.83270 0.78541 1.20231 1.21427 1.18763 1.20472 0.87151 0.94577 1.49816 0.90486 1.20022 0.95245 0.89711 0.94122 0.91670 1.23107 1.01993 1.05772 0.92938 1.22504 0.98138 0.94541 1.02668 1.23306 0.99953 0.94401 0.89791 1.68691 1.12197 1.03338 1.34281 1.21613 0.94840 0.90149 1.00553 1.19743 0.97721 0.96127 0.93482 1.21072 0.96654 0.96395 0.98921 1.21089 0.97982 0.98382 0.96427 1.21102 0.99926 1.00271 0.93080 1.21116 0.96859 0.96957 0.99146 1.21013 0.97933 0.97161 0.95833 1.23479 0.94231 0.95161 0.96145 0.92502 0.89577 0.91231 0.92669 0.88956 0.90291 0.93834 0.86439 0.86281 0.86420 0.86295 0.86101 0.90012 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 21.50 27.19 -169.99 -4.62 16.87 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.16 6.93 56.52 0.39 -5.76 16 7 C -0.48 -13.67 9.60 -34.44 -0.33 -14.00 16 8 H 0.08 2.37 7.13 -52.49 -0.37 1.99 16 9 C 0.03 0.67 4.74 -92.04 -0.44 0.23 16 10 H 0.07 1.55 6.48 -51.93 -0.34 1.22 16 11 C -0.20 -4.18 10.24 -26.99 -0.28 -4.46 16 12 C -0.18 -3.63 3.07 -154.98 -0.48 -4.10 16 13 C 0.05 1.02 6.76 -3.02 -0.02 1.00 16 14 N -0.46 -8.20 6.25 -243.10 -1.52 -9.72 16 15 C 0.06 0.81 4.97 -4.98 -0.02 0.78 16 16 C -0.07 -1.01 5.11 -104.63 -0.54 -1.54 16 17 C -0.11 -1.53 8.97 -39.58 -0.35 -1.89 16 18 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 19 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 20 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 21 C -0.10 -1.36 9.70 -39.58 -0.38 -1.75 16 22 C 0.04 0.65 7.99 -3.02 -0.02 0.62 16 23 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 25 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.06 0.94 7.08 -51.92 -0.37 0.58 16 27 H 0.09 2.04 7.22 -51.93 -0.37 1.66 16 28 H 0.08 1.02 8.09 -51.93 -0.42 0.60 16 29 H 0.04 0.58 7.64 -51.93 -0.40 0.18 16 30 H 0.12 1.50 7.44 -52.49 -0.39 1.11 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.06 0.88 7.80 -51.93 -0.40 0.47 16 LS Contribution 299.13 15.07 4.51 4.51 Total: -1.00 -30.42 299.13 -10.18 -40.61 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.17 Total: 3.03 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: -4.15 Total: -28.80 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: -0.75 Total: -36.22 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.62 Total: 16.87 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.42 -10.18 -40.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260066785.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.588 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds