Wall clock time and date at job start Mon Mar 30 2020 05:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00071 * 2 1 4 4 H 1.48502 * 109.47514 * 270.00197 * 3 2 1 5 5 H 1.48505 * 109.47447 * 30.00160 * 3 2 1 6 6 H 1.48502 * 109.47117 * 150.00080 * 3 2 1 7 7 C 1.37876 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99762 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00066 * 180.02562 * 7 2 1 10 10 H 1.09005 * 115.57889 * 325.59647 * 9 7 2 11 11 C 1.53148 * 117.52001 * 111.39023 * 9 7 2 12 12 C 1.52334 * 117.51561 * 179.81790 * 9 7 2 13 13 C 1.53288 * 128.80286 * 10.43220 * 12 9 7 14 14 N 1.48097 * 85.92249 * 116.52622 * 13 12 9 15 15 C 1.46901 * 111.00269 * 137.12706 * 14 13 12 16 16 C 1.50690 * 109.47030 * 70.41086 * 15 14 13 17 17 C 1.38243 * 119.99903 * 269.72480 * 16 15 14 18 18 C 1.38233 * 119.99847 * 179.79026 * 17 16 15 19 19 C 1.38233 * 120.00161 * 0.44171 * 18 17 16 20 20 C 1.38239 * 120.00304 * 359.81461 * 19 18 17 21 21 C 1.38234 * 120.00511 * 90.00050 * 16 15 14 22 22 C 1.48101 * 90.96086 * 24.14811 * 14 13 12 23 23 H 0.97003 * 119.99414 * 359.97438 * 1 2 3 24 24 H 1.09003 * 117.51603 * 359.97438 * 11 9 7 25 25 H 1.09001 * 117.51896 * 214.88025 * 11 9 7 26 26 H 1.09009 * 113.79745 * 230.77208 * 13 12 9 27 27 H 1.08991 * 113.80211 * 2.27314 * 13 12 9 28 28 H 1.09002 * 109.47288 * 190.40963 * 15 14 13 29 29 H 1.09000 * 109.46749 * 310.40823 * 15 14 13 30 30 H 1.07995 * 119.99859 * 359.97438 * 17 16 15 31 31 H 1.08001 * 120.00071 * 180.27073 * 18 17 16 32 32 H 1.07997 * 120.00258 * 179.83025 * 19 18 17 33 33 H 1.07995 * 120.00612 * 179.97438 * 20 19 18 34 34 H 1.08002 * 119.99958 * 359.97438 * 21 16 15 35 35 H 1.08997 * 113.79944 * 221.60070 * 22 14 13 36 36 H 1.09002 * 113.80073 * 90.10506 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.9824 -0.3825 -0.5548 11 6 4.2186 -1.6903 1.2646 12 6 4.2152 -2.5452 0.0037 13 6 3.6171 -3.9404 -0.2093 14 7 4.4690 -4.0052 -1.4190 15 6 5.1097 -5.3214 -1.5418 16 6 4.0709 -6.3547 -1.8940 17 6 3.4055 -7.0354 -0.8915 18 6 2.4495 -7.9802 -1.2145 19 6 2.1655 -8.2509 -2.5400 20 6 2.8346 -7.5741 -3.5426 21 6 3.7875 -6.6262 -3.2195 22 6 5.4043 -3.0112 -0.8440 23 1 -0.4849 0.8401 0.0004 24 1 3.5936 -2.0163 2.0961 25 1 5.1545 -1.2051 1.5416 26 1 3.8929 -4.6596 0.5619 27 1 2.5485 -3.9328 -0.4238 28 1 5.8666 -5.2854 -2.3254 29 1 5.5795 -5.5865 -0.5947 30 1 3.6304 -6.8269 0.1440 31 1 1.9265 -8.5088 -0.4313 32 1 1.4205 -8.9910 -2.7924 33 1 2.6131 -7.7859 -4.5781 34 1 4.3102 -6.0973 -4.0027 35 1 5.7515 -2.2676 -1.5613 36 1 6.2130 -3.4534 -0.2620 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260066785.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:27 Heat of formation + Delta-G solvation = 68.050848 kcal Electronic energy + Delta-G solvation = -16754.683248 eV Core-core repulsion = 14204.691675 eV Total energy + Delta-G solvation = -2549.991573 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.23244 -39.75087 -36.53837 -34.29249 -32.78005 -31.76344 -28.68873 -27.68081 -26.88346 -23.90786 -23.42889 -22.20798 -21.72519 -19.27500 -18.90336 -17.66328 -16.85036 -16.50493 -16.41434 -16.00059 -15.70081 -15.22036 -14.63901 -14.42290 -14.26571 -13.86480 -13.60130 -13.40535 -13.09228 -12.96807 -12.82150 -12.52563 -11.87772 -11.82804 -11.74266 -11.55559 -11.28709 -11.05460 -10.71534 -10.36629 -9.79291 -9.70331 -9.47902 -8.28578 -6.29393 0.45063 0.52990 1.38753 1.40021 1.53928 2.38686 2.73640 2.91394 3.18118 3.45743 3.58667 3.83189 3.95157 4.05592 4.18007 4.26470 4.32856 4.38792 4.45916 4.59275 4.65036 4.69779 4.77923 4.83380 4.91301 5.00982 5.12409 5.15658 5.16819 5.21334 5.35714 5.43276 5.60320 5.63281 5.67743 5.73891 6.13976 6.24004 6.35040 6.72137 7.32054 8.87572 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.028996 B = 0.005567 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.405036 B = 5028.067193 C = 5482.569328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.010 3.990 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.242 1.242 7 C -0.490 4.490 8 H 0.029 0.971 9 C -0.012 4.012 10 H 0.072 0.928 11 C -0.180 4.180 12 C -0.176 4.176 13 C 0.058 3.942 14 N -0.483 5.483 15 C 0.061 3.939 16 C -0.091 4.091 17 C -0.128 4.128 18 C -0.132 4.132 19 C -0.131 4.131 20 C -0.130 4.130 21 C -0.117 4.117 22 C 0.054 3.946 23 H 0.267 0.733 24 H 0.074 0.926 25 H 0.102 0.898 26 H 0.078 0.922 27 H 0.049 0.951 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.121 0.879 31 H 0.137 0.863 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.128 0.872 35 H 0.089 0.911 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.050 -13.341 -3.156 18.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.165 1.165 7 C -0.527 4.527 8 H 0.047 0.953 9 C -0.030 4.030 10 H 0.090 0.910 11 C -0.218 4.218 12 C -0.177 4.177 13 C -0.070 4.070 14 N -0.205 5.205 15 C -0.067 4.067 16 C -0.091 4.091 17 C -0.147 4.147 18 C -0.149 4.149 19 C -0.149 4.149 20 C -0.148 4.148 21 C -0.136 4.136 22 C -0.074 4.074 23 H 0.076 0.924 24 H 0.093 0.907 25 H 0.120 0.880 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.114 0.886 29 H 0.076 0.924 30 H 0.139 0.861 31 H 0.155 0.845 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.146 0.854 35 H 0.107 0.893 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.629 -13.149 -3.818 17.964 hybrid contribution -0.133 0.479 0.833 0.970 sum 11.495 -12.670 -2.986 17.366 Atomic orbital electron populations 1.70063 1.08428 1.28260 1.52210 1.25964 0.95509 1.03469 0.93797 0.85587 0.79716 0.77814 0.79035 1.19434 1.21214 1.16459 1.20652 0.89847 0.92860 1.49324 0.95258 1.19905 0.92728 0.92812 0.97604 0.91009 1.23040 1.02194 1.04816 0.91756 1.22653 0.99556 0.93295 1.02153 1.23167 0.97896 0.94610 0.91344 1.68612 1.12835 1.05620 1.33475 1.21646 0.94934 0.88254 1.01856 1.19897 0.98456 0.96719 0.94034 1.21261 0.97271 0.97018 0.99145 1.21415 0.97797 0.98263 0.97471 1.21476 1.00093 1.00474 0.92812 1.21460 0.96319 0.96435 1.00539 1.21254 0.98603 0.97802 0.95893 1.23520 0.93500 0.94817 0.95585 0.92417 0.90723 0.87977 0.90452 0.93295 0.88596 0.92426 0.86113 0.84484 0.83945 0.84067 0.85368 0.89277 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.34 13.96 21.45 0.30 -60.04 16 2 C 0.01 0.57 5.47 84.65 0.46 1.03 16 3 Si 0.96 44.59 27.19 68.60 1.86 46.46 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.24 -10.32 6.93 99.48 0.69 -9.63 16 7 C -0.49 -28.77 9.60 25.60 0.25 -28.52 16 8 H 0.03 1.93 7.13 -2.91 -0.02 1.91 16 9 C -0.01 -0.56 4.74 -11.71 -0.06 -0.62 16 10 H 0.07 3.30 6.48 -2.38 -0.02 3.28 16 11 C -0.18 -7.16 10.24 30.42 0.31 -6.85 16 12 C -0.18 -6.92 3.07 -52.40 -0.16 -7.09 16 13 C 0.06 2.22 6.76 86.17 0.58 2.80 16 14 N -0.48 -16.34 6.25 -923.03 -5.77 -22.11 16 15 C 0.06 1.60 4.97 85.55 0.43 2.02 16 16 C -0.09 -2.51 5.11 -19.87 -0.10 -2.61 16 17 C -0.13 -3.43 8.97 22.27 0.20 -3.23 16 18 C -0.13 -3.17 10.05 22.27 0.22 -2.94 16 19 C -0.13 -2.93 10.05 22.27 0.22 -2.70 16 20 C -0.13 -3.01 10.05 22.27 0.22 -2.78 16 21 C -0.12 -3.05 9.70 22.27 0.22 -2.83 16 22 C 0.05 1.65 7.99 86.17 0.69 2.34 16 23 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 24 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 25 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 26 H 0.08 2.57 7.08 -2.38 -0.02 2.55 16 27 H 0.05 2.28 7.22 -2.39 -0.02 2.26 16 28 H 0.10 2.19 8.09 -2.39 -0.02 2.17 16 29 H 0.06 1.36 7.64 -2.39 -0.02 1.34 16 30 H 0.12 3.01 7.44 -2.91 -0.02 2.99 16 31 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 32 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.13 3.02 8.06 -2.91 -0.02 2.99 16 35 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.09 2.28 7.80 -2.39 -0.02 2.26 16 Total: -1.00 -68.67 299.13 0.92 -67.75 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 1.03 Total: 19.93 kcal Atomic # 6 Polarization: -55.47 SS G_CDS: 3.49 Total: -51.99 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -5.47 Total: -82.16 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.86 Total: 46.46 kcal Total: -68.67 0.92 -67.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260066785.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.803 kcal (2) G-P(sol) polarization free energy of solvation -68.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds