Wall clock time and date at job start Mon Mar 30 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34322 * 126.58746 * 2 1 4 4 N 1.36711 * 109.81556 * 179.83416 * 3 2 1 5 5 C 1.46501 * 124.99904 * 180.18548 * 4 3 2 6 6 C 1.52996 * 109.46989 * 306.46633 * 5 4 3 7 7 C 1.53000 * 109.46873 * 66.46808 * 5 4 3 8 8 C 1.36965 * 110.00709 * 0.44729 * 4 3 2 9 9 C 1.40316 * 107.35264 * 359.73726 * 8 4 3 10 10 C 1.39860 * 120.12824 * 179.97438 * 9 8 4 11 11 C 1.38281 * 120.19504 * 0.02562 * 10 9 8 12 12 C 1.37918 * 120.68290 * 359.97438 * 11 10 9 13 13 C 1.40633 * 120.37034 * 0.02562 * 12 11 10 14 14 C 1.40969 * 120.30124 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00309 * 220.71903 * 14 13 12 16 16 C 1.39954 * 119.99936 * 40.72259 * 14 13 12 17 17 N 1.30854 * 119.99693 * 9.19061 * 16 14 13 18 18 Si 1.86802 * 119.99926 * 189.19840 * 16 14 13 19 19 H 1.48498 * 109.47288 * 59.99580 * 18 16 14 20 20 H 1.48499 * 109.46934 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47065 * 299.99563 * 18 16 14 22 22 H 1.09001 * 109.47406 * 269.68792 * 1 2 3 23 23 H 1.09002 * 109.47472 * 149.67942 * 1 2 3 24 24 H 1.09004 * 109.47349 * 29.68530 * 1 2 3 25 25 H 1.08003 * 125.08900 * 0.02562 * 3 2 1 26 26 H 1.08996 * 109.47216 * 186.47017 * 5 4 3 27 27 H 1.08996 * 109.47351 * 299.99965 * 6 5 4 28 28 H 1.09006 * 109.46901 * 60.00145 * 6 5 4 29 29 H 1.09003 * 109.46887 * 179.97438 * 6 5 4 30 30 H 1.09000 * 109.47235 * 60.00117 * 7 5 4 31 31 H 1.09009 * 109.46687 * 179.97438 * 7 5 4 32 32 H 1.08996 * 109.47370 * 300.00115 * 7 5 4 33 33 H 1.07995 * 119.90242 * 180.02562 * 10 9 8 34 34 H 1.08001 * 119.65659 * 180.02562 * 11 10 9 35 35 H 1.08002 * 119.81423 * 179.97438 * 12 11 10 36 36 H 0.97004 * 119.99133 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3076 1.0785 0.0000 4 7 3.6165 0.6840 0.0037 5 6 4.7673 1.5906 0.0087 6 6 4.6412 2.5812 -1.1504 7 6 4.8072 2.3568 1.3325 8 6 3.6938 -0.6834 -0.0038 9 6 2.3803 -1.1768 -0.0065 10 6 2.1485 -2.5561 -0.0146 11 6 3.2119 -3.4400 -0.0195 12 6 4.5113 -2.9777 -0.0169 13 6 4.7746 -1.5963 -0.0088 14 6 6.1033 -1.1254 -0.0057 15 1 6.3753 -0.2805 0.6094 16 6 7.0699 -1.7529 -0.7998 17 7 6.7109 -2.6551 -1.6769 18 14 8.8726 -1.3025 -0.6075 19 1 9.3089 -1.5894 0.7827 20 1 9.6868 -2.1033 -1.5566 21 1 9.0551 0.1429 -0.8952 22 1 -0.3634 -0.0056 1.0276 23 1 -0.3634 -0.8871 -0.5188 24 1 -0.3634 0.8928 -0.5089 25 1 1.9680 2.1038 0.0004 26 1 5.6850 1.0135 -0.1049 27 1 4.6127 2.0354 -2.0934 28 1 3.7234 3.1584 -1.0368 29 1 5.4972 3.2560 -1.1464 30 1 4.8971 1.6510 2.1582 31 1 5.6638 3.0310 1.3363 32 1 3.8896 2.9339 1.4461 33 1 1.1361 -2.9319 -0.0171 34 1 3.0230 -4.5033 -0.0261 35 1 5.3313 -3.6806 -0.0204 36 1 7.3809 -3.0902 -2.2270 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260085340.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:03 Heat of formation + Delta-G solvation = 40.161107 kcal Electronic energy + Delta-G solvation = -17628.941697 eV Core-core repulsion = 15077.740734 eV Total energy + Delta-G solvation = -2551.200963 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.22303 -36.03031 -34.74750 -32.95746 -31.10772 -29.18017 -27.71041 -26.90230 -25.63729 -25.02708 -21.23059 -20.90647 -20.01833 -18.23870 -16.64177 -15.76478 -15.33464 -14.82132 -14.11769 -13.95310 -13.66953 -13.16488 -12.79343 -12.74272 -12.24849 -12.06393 -12.02087 -11.84486 -11.62494 -11.40267 -11.18283 -11.13240 -10.85472 -10.83433 -10.54234 -10.25170 -9.92423 -9.66367 -9.25756 -9.10980 -7.92824 -6.86609 -6.61666 -6.33674 -4.25922 2.54106 3.04259 3.08346 3.10501 3.21147 3.78773 3.89738 3.99067 4.76846 5.21552 5.43144 5.55080 5.64311 5.71756 5.81316 5.84206 5.98446 6.01478 6.12899 6.19716 6.26023 6.27759 6.44115 6.54848 6.57656 6.60999 6.73878 7.00951 7.10376 7.23861 7.37712 7.51372 7.86951 7.90483 8.17341 8.26592 8.34723 8.54176 8.71210 8.92554 9.01253 10.36736 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.020365 B = 0.010402 C = 0.007408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.549495 B = 2691.154013 C = 3778.906548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.206 4.206 3 C 0.030 3.970 4 N -0.458 5.458 5 C 0.112 3.888 6 C -0.156 4.156 7 C -0.158 4.158 8 C 0.044 3.956 9 C -0.084 4.084 10 C -0.191 4.191 11 C -0.112 4.112 12 C -0.163 4.163 13 C 0.123 3.877 14 C -0.488 4.488 15 H 0.076 0.924 16 C 0.079 3.921 17 N -0.808 5.808 18 Si 0.900 3.100 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.268 1.268 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.144 0.856 26 H 0.130 0.870 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.918 7.176 2.001 8.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.215 4.215 3 C -0.098 4.098 4 N -0.140 5.140 5 C 0.010 3.990 6 C -0.214 4.214 7 C -0.216 4.216 8 C -0.060 4.060 9 C -0.088 4.088 10 C -0.212 4.212 11 C -0.130 4.130 12 C -0.184 4.184 13 C 0.119 3.881 14 C -0.519 4.519 15 H 0.093 0.907 16 C -0.136 4.136 17 N -0.434 5.434 18 Si 0.725 3.275 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.193 1.193 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.161 0.839 26 H 0.147 0.853 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.527 7.246 1.813 7.885 hybrid contribution 0.899 0.226 -0.105 0.933 sum -1.628 7.472 1.708 7.836 Atomic orbital electron populations 1.19896 0.91196 1.00711 1.00168 1.20078 0.94023 0.91910 1.15512 1.21071 0.83175 0.97649 1.07873 1.43434 1.04144 1.04416 1.62028 1.21702 0.91463 0.91393 0.94473 1.22117 1.01471 0.98851 0.98996 1.22162 1.01482 1.00177 0.97789 1.18775 0.95334 0.82018 1.09889 1.18774 0.91585 0.92499 1.05991 1.19794 0.96676 0.90858 1.13825 1.20503 0.93413 0.96930 1.02201 1.20734 0.94529 0.94464 1.08721 1.16655 0.90354 0.89947 0.91100 1.19169 0.93208 1.14853 1.24676 0.90653 1.25699 1.00312 0.93878 0.93742 1.69785 1.35687 1.21431 1.16533 0.86506 0.82531 0.79324 0.79117 1.19021 1.20401 1.19275 0.93297 0.92726 0.93363 0.83880 0.85289 0.91959 0.92935 0.91767 0.92097 0.91819 0.92909 0.89371 0.89263 0.87436 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.02 10.42 36.00 0.38 -0.64 16 2 C -0.21 -4.26 6.33 -102.66 -0.65 -4.91 16 3 C 0.03 0.57 10.15 -16.76 -0.17 0.40 16 4 N -0.46 -9.80 2.63 -106.96 -0.28 -10.09 16 5 C 0.11 2.06 3.36 -67.93 -0.23 1.83 16 6 C -0.16 -2.42 9.13 37.16 0.34 -2.08 16 7 C -0.16 -2.42 9.31 37.16 0.35 -2.07 16 8 C 0.04 1.11 6.77 -83.56 -0.57 0.55 16 9 C -0.08 -2.05 6.35 -105.16 -0.67 -2.71 16 10 C -0.19 -4.55 10.11 -38.96 -0.39 -4.94 16 11 C -0.11 -2.70 10.00 -39.68 -0.40 -3.10 16 12 C -0.16 -4.31 8.61 -38.80 -0.33 -4.64 16 13 C 0.12 3.28 5.39 -106.73 -0.57 2.71 16 14 C -0.49 -12.61 7.38 -37.91 -0.28 -12.89 16 15 H 0.08 1.85 6.05 -52.49 -0.32 1.53 16 16 C 0.08 1.99 5.23 -17.33 -0.09 1.90 16 17 N -0.81 -21.31 11.63 55.55 0.65 -20.66 16 18 Si 0.90 18.69 29.57 -169.99 -5.03 13.66 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.14 2.25 7.79 -52.48 -0.41 1.85 16 26 H 0.13 2.69 4.34 -51.93 -0.23 2.46 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.73 7.57 -51.93 -0.39 0.33 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 32 H 0.05 0.74 8.02 -51.93 -0.42 0.32 16 33 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 34 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 35 H 0.11 2.90 7.09 -52.49 -0.37 2.53 16 36 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 LS Contribution 295.95 15.07 4.46 4.46 Total: -1.00 -28.59 295.95 -8.57 -37.15 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.07 Total: 6.07 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: -3.29 Total: -30.60 kcal Atomic # 7 Polarization: -31.11 SS G_CDS: 0.36 Total: -30.75 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.59 -8.57 -37.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260085340.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.315 kcal (2) G-P(sol) polarization free energy of solvation -28.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds