Wall clock time and date at job start Mon Mar 30 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34322 * 126.58746 * 2 1 4 4 N 1.36711 * 109.81556 * 179.83416 * 3 2 1 5 5 C 1.46501 * 124.99904 * 180.18548 * 4 3 2 6 6 C 1.52996 * 109.46989 * 306.46633 * 5 4 3 7 7 C 1.53000 * 109.46873 * 66.46808 * 5 4 3 8 8 C 1.36965 * 110.00709 * 0.44729 * 4 3 2 9 9 C 1.40316 * 107.35264 * 359.73726 * 8 4 3 10 10 C 1.39860 * 120.12824 * 179.97438 * 9 8 4 11 11 C 1.38281 * 120.19504 * 0.02562 * 10 9 8 12 12 C 1.37918 * 120.68290 * 359.97438 * 11 10 9 13 13 C 1.40633 * 120.37034 * 0.02562 * 12 11 10 14 14 C 1.40969 * 120.30124 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00309 * 220.71903 * 14 13 12 16 16 C 1.39954 * 119.99936 * 40.72259 * 14 13 12 17 17 N 1.30854 * 119.99693 * 9.19061 * 16 14 13 18 18 Si 1.86802 * 119.99926 * 189.19840 * 16 14 13 19 19 H 1.48498 * 109.47288 * 59.99580 * 18 16 14 20 20 H 1.48499 * 109.46934 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47065 * 299.99563 * 18 16 14 22 22 H 1.09001 * 109.47406 * 269.68792 * 1 2 3 23 23 H 1.09002 * 109.47472 * 149.67942 * 1 2 3 24 24 H 1.09004 * 109.47349 * 29.68530 * 1 2 3 25 25 H 1.08003 * 125.08900 * 0.02562 * 3 2 1 26 26 H 1.08996 * 109.47216 * 186.47017 * 5 4 3 27 27 H 1.08996 * 109.47351 * 299.99965 * 6 5 4 28 28 H 1.09006 * 109.46901 * 60.00145 * 6 5 4 29 29 H 1.09003 * 109.46887 * 179.97438 * 6 5 4 30 30 H 1.09000 * 109.47235 * 60.00117 * 7 5 4 31 31 H 1.09009 * 109.46687 * 179.97438 * 7 5 4 32 32 H 1.08996 * 109.47370 * 300.00115 * 7 5 4 33 33 H 1.07995 * 119.90242 * 180.02562 * 10 9 8 34 34 H 1.08001 * 119.65659 * 180.02562 * 11 10 9 35 35 H 1.08002 * 119.81423 * 179.97438 * 12 11 10 36 36 H 0.97004 * 119.99133 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3076 1.0785 0.0000 4 7 3.6165 0.6840 0.0037 5 6 4.7673 1.5906 0.0087 6 6 4.6412 2.5812 -1.1504 7 6 4.8072 2.3568 1.3325 8 6 3.6938 -0.6834 -0.0038 9 6 2.3803 -1.1768 -0.0065 10 6 2.1485 -2.5561 -0.0146 11 6 3.2119 -3.4400 -0.0195 12 6 4.5113 -2.9777 -0.0169 13 6 4.7746 -1.5963 -0.0088 14 6 6.1033 -1.1254 -0.0057 15 1 6.3753 -0.2805 0.6094 16 6 7.0699 -1.7529 -0.7998 17 7 6.7109 -2.6551 -1.6769 18 14 8.8726 -1.3025 -0.6075 19 1 9.3089 -1.5894 0.7827 20 1 9.6868 -2.1033 -1.5566 21 1 9.0551 0.1429 -0.8952 22 1 -0.3634 -0.0056 1.0276 23 1 -0.3634 -0.8871 -0.5188 24 1 -0.3634 0.8928 -0.5089 25 1 1.9680 2.1038 0.0004 26 1 5.6850 1.0135 -0.1049 27 1 4.6127 2.0354 -2.0934 28 1 3.7234 3.1584 -1.0368 29 1 5.4972 3.2560 -1.1464 30 1 4.8971 1.6510 2.1582 31 1 5.6638 3.0310 1.3363 32 1 3.8896 2.9339 1.4461 33 1 1.1361 -2.9319 -0.0171 34 1 3.0230 -4.5033 -0.0261 35 1 5.3313 -3.6806 -0.0204 36 1 7.3809 -3.0902 -2.2270 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260085340.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:03 Heat of formation + Delta-G solvation = 26.586003 kcal Electronic energy + Delta-G solvation = -17629.530358 eV Core-core repulsion = 15077.740734 eV Total energy + Delta-G solvation = -2551.789623 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.88878 -37.78260 -36.35181 -34.74614 -32.65465 -30.94559 -29.49011 -28.11575 -27.07899 -26.92245 -23.02870 -22.52957 -21.68180 -19.96628 -18.43374 -17.35887 -17.09101 -16.51806 -15.71272 -15.63775 -15.18199 -14.76712 -14.51356 -14.02002 -13.74395 -13.50809 -13.47972 -13.25587 -13.15522 -12.91701 -12.82386 -12.73136 -12.41679 -12.30857 -12.19676 -11.80770 -11.63637 -11.42601 -11.07333 -10.95443 -9.69804 -8.71456 -8.49143 -8.08510 -6.22097 0.75936 1.29889 1.36195 1.42568 1.47389 2.10768 2.23688 2.35918 2.88041 3.69683 3.89040 4.14243 4.17504 4.26313 4.42959 4.55985 4.59934 4.69600 4.73379 4.80468 4.84737 4.94416 5.02749 5.06873 5.14179 5.21097 5.24641 5.31512 5.40166 5.46829 5.57897 5.66557 6.01356 6.10597 6.26081 6.44508 6.51116 6.81349 6.88724 7.04390 7.11195 8.49737 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.020365 B = 0.010402 C = 0.007408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.549495 B = 2691.154013 C = 3778.906548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.222 4.222 3 C 0.041 3.959 4 N -0.462 5.462 5 C 0.101 3.899 6 C -0.148 4.148 7 C -0.148 4.148 8 C 0.015 3.985 9 C -0.113 4.113 10 C -0.194 4.194 11 C -0.124 4.124 12 C -0.192 4.192 13 C 0.093 3.907 14 C -0.506 4.506 15 H 0.080 0.920 16 C 0.035 3.965 17 N -0.847 5.847 18 Si 0.971 3.029 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.254 1.254 22 H 0.062 0.938 23 H 0.050 0.950 24 H 0.077 0.923 25 H 0.190 0.810 26 H 0.097 0.903 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.038 0.962 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.653 10.028 2.295 10.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.230 4.230 3 C -0.086 4.086 4 N -0.143 5.143 5 C -0.001 4.001 6 C -0.205 4.205 7 C -0.206 4.206 8 C -0.091 4.091 9 C -0.117 4.117 10 C -0.214 4.214 11 C -0.143 4.143 12 C -0.213 4.213 13 C 0.090 3.910 14 C -0.537 4.537 15 H 0.097 0.903 16 C -0.177 4.177 17 N -0.475 5.475 18 Si 0.793 3.207 19 H -0.187 1.187 20 H -0.199 1.199 21 H -0.178 1.178 22 H 0.081 0.919 23 H 0.070 0.930 24 H 0.095 0.905 25 H 0.207 0.793 26 H 0.115 0.885 27 H 0.055 0.945 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.057 0.943 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.105 0.895 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.274 10.118 2.114 10.843 hybrid contribution 1.024 -0.617 -0.187 1.210 sum -2.250 9.501 1.927 9.952 Atomic orbital electron populations 1.19949 0.88075 1.02028 1.01424 1.20588 0.96213 0.90552 1.15697 1.21786 0.81953 0.99505 1.05358 1.43745 1.05870 1.03420 1.61295 1.21888 0.89334 0.91372 0.97504 1.22060 1.03972 0.98277 0.96220 1.22087 1.03816 0.99798 0.94877 1.18954 0.95396 0.84051 1.10652 1.19368 0.92566 0.93783 1.06014 1.20123 0.97492 0.91102 1.12708 1.20728 0.92919 0.98296 1.02357 1.20698 0.94920 0.94542 1.11156 1.17004 0.91625 0.90582 0.91808 1.19398 0.93620 1.15439 1.25211 0.90254 1.26577 1.04735 0.93465 0.92933 1.69891 1.37242 1.22793 1.17581 0.85413 0.76615 0.79631 0.79059 1.18682 1.19895 1.17841 0.91949 0.93048 0.90460 0.79328 0.88491 0.94469 0.90552 0.89049 0.94286 0.89030 0.90856 0.87033 0.87253 0.89535 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.68 10.42 71.23 0.74 -0.94 16 2 C -0.22 -8.71 6.33 -18.59 -0.12 -8.82 16 3 C 0.04 1.47 10.15 83.04 0.84 2.32 16 4 N -0.46 -19.34 2.63 -492.32 -1.30 -20.64 16 5 C 0.10 3.55 3.36 44.99 0.15 3.71 16 6 C -0.15 -4.16 9.13 71.98 0.66 -3.50 16 7 C -0.15 -4.13 9.31 71.98 0.67 -3.46 16 8 C 0.02 0.78 6.77 39.64 0.27 1.05 16 9 C -0.11 -5.48 6.35 -20.21 -0.13 -5.60 16 10 C -0.19 -9.34 10.11 22.67 0.23 -9.11 16 11 C -0.12 -6.25 10.00 22.20 0.22 -6.02 16 12 C -0.19 -10.74 8.61 22.78 0.20 -10.54 16 13 C 0.09 5.22 5.39 -21.23 -0.11 5.10 16 14 C -0.51 -27.24 7.38 23.36 0.17 -27.07 16 15 H 0.08 4.05 6.05 -2.91 -0.02 4.04 16 16 C 0.03 1.80 5.23 85.25 0.45 2.25 16 17 N -0.85 -46.76 11.63 21.83 0.25 -46.51 16 18 Si 0.97 39.04 29.57 68.60 2.03 41.06 16 19 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 20 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 21 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 22 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 25 H 0.19 4.92 7.79 -2.91 -0.02 4.89 16 26 H 0.10 4.08 4.34 -2.39 -0.01 4.07 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.08 1.78 7.57 -2.38 -0.02 1.76 16 29 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.07 1.74 8.02 -2.39 -0.02 1.72 16 33 H 0.11 4.68 8.06 -2.91 -0.02 4.65 16 34 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 35 H 0.09 5.04 7.09 -2.91 -0.02 5.02 16 36 H 0.28 14.28 8.30 -92.71 -0.77 13.51 16 Total: -1.00 -65.58 295.95 6.28 -59.30 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 1.06 Total: 27.44 kcal Atomic # 6 Polarization: -64.89 SS G_CDS: 4.24 Total: -60.65 kcal Atomic # 7 Polarization: -66.11 SS G_CDS: -1.04 Total: -67.15 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.06 kcal Total: -65.58 6.28 -59.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260085340.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.882 kcal (2) G-P(sol) polarization free energy of solvation -65.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds