Wall clock time and date at job start Mon Mar 30 2020 05:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86797 * 119.99839 * 2 1 4 4 H 1.48501 * 109.47227 * 264.86815 * 3 2 1 5 5 H 1.48496 * 109.47351 * 24.86906 * 3 2 1 6 6 H 1.48502 * 109.47311 * 144.87035 * 3 2 1 7 7 C 1.39923 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99879 * 350.85674 * 7 2 1 9 9 C 1.41048 * 120.00322 * 170.59070 * 7 2 1 10 10 C 1.40583 * 120.18843 * 317.46945 * 9 7 2 11 11 C 1.36444 * 120.12567 * 180.11549 * 10 9 7 12 12 C 1.38931 * 120.35581 * 0.09574 * 11 10 9 13 13 C 1.37978 * 120.62592 * 359.97438 * 12 11 10 14 14 C 1.38805 * 120.52895 * 359.44869 * 13 12 11 15 15 N 1.39011 * 111.19467 * 181.16564 * 14 13 12 16 16 C 1.46898 * 111.00543 * 219.64031 * 15 14 13 17 17 C 1.53772 * 113.61930 * 151.98355 * 16 15 14 18 18 C 1.53956 * 87.02059 * 220.04905 * 17 16 15 19 19 C 1.53781 * 87.11262 * 25.36248 * 18 17 16 20 20 C 1.47925 * 107.98083 * 341.52178 * 15 14 13 21 21 C 1.51610 * 131.59305 * 179.35168 * 13 12 11 22 22 H 0.97002 * 120.00277 * 359.97438 * 1 2 3 23 23 H 1.08000 * 119.93484 * 0.13775 * 10 9 7 24 24 H 1.07998 * 119.81834 * 180.11696 * 11 10 9 25 25 H 1.08003 * 119.68574 * 179.97438 * 12 11 10 26 26 H 1.08999 * 112.84704 * 283.18426 * 16 15 14 27 27 H 1.09006 * 113.61308 * 334.56764 * 17 16 15 28 28 H 1.08995 * 113.62048 * 105.47395 * 17 16 15 29 29 H 1.09003 * 113.54165 * 270.80942 * 18 17 16 30 30 H 1.09005 * 113.66946 * 139.93308 * 18 17 16 31 31 H 1.08996 * 113.61797 * 220.09155 * 19 18 17 32 32 H 1.09000 * 113.69242 * 89.19820 * 19 18 17 33 33 H 1.08994 * 110.79592 * 145.61437 * 20 15 14 34 34 H 1.08998 * 110.79404 * 268.89993 * 20 15 14 35 35 H 1.08997 * 110.76505 * 314.28126 * 21 13 12 36 36 H 1.09001 * 110.76791 * 77.67656 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.5987 1.9838 -1.3945 5 1 1.3902 2.6815 0.5888 6 1 3.4819 1.4740 0.8056 7 6 2.0085 -1.2118 -0.0005 8 1 1.4787 -2.1412 0.1477 9 6 3.4047 -1.2199 -0.2002 10 6 3.9830 -0.3983 -1.1835 11 6 5.3336 -0.4090 -1.3772 12 6 6.1468 -1.2315 -0.6075 13 6 5.6033 -2.0481 0.3628 14 6 4.2347 -2.0534 0.5945 15 7 3.9031 -2.9235 1.6266 16 6 2.6630 -3.6506 1.3242 17 6 2.5800 -5.0323 1.9941 18 6 1.9602 -5.5429 0.6806 19 6 2.6957 -4.3904 -0.0236 20 6 5.0332 -3.8589 1.8162 21 6 6.2412 -3.0359 1.3199 22 1 -0.4851 0.8400 0.0004 23 1 3.3571 0.2428 -1.7865 24 1 5.7728 0.2256 -2.1327 25 1 7.2145 -1.2316 -0.7703 26 1 1.7700 -3.0420 1.4667 27 1 3.5538 -5.4691 2.2162 28 1 1.8965 -5.0660 2.8424 29 1 0.8744 -5.4528 0.6476 30 1 2.3131 -6.5311 0.3853 31 1 2.1054 -3.9065 -0.8017 32 1 3.7011 -4.6500 -0.3549 33 1 5.1449 -4.1227 2.8678 34 1 4.9022 -4.7528 1.2064 35 1 6.9617 -3.6673 0.8001 36 1 6.7122 -2.5164 2.1544 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260099684.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:28 Heat of formation + Delta-G solvation = 61.640866 kcal Electronic energy + Delta-G solvation = -18063.093909 eV Core-core repulsion = 15512.824379 eV Total energy + Delta-G solvation = -2550.269530 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.39477 -37.49458 -35.13809 -33.34114 -31.24234 -28.79294 -28.16402 -25.32490 -25.10784 -23.41847 -22.07691 -20.47797 -20.05676 -18.21703 -17.13625 -16.08679 -15.48147 -15.31876 -14.75010 -14.23360 -13.76458 -13.32430 -12.96822 -12.45903 -12.24983 -12.13958 -11.98595 -11.77261 -11.34918 -11.23127 -11.03574 -10.77470 -10.60592 -10.53682 -10.32960 -10.10308 -9.83993 -9.73200 -9.35763 -9.02432 -8.73487 -7.47043 -6.75107 -6.64731 -4.31585 2.55971 2.60021 3.20165 3.27294 3.40248 4.11699 4.51864 4.71979 5.07125 5.10332 5.24829 5.26542 5.39316 5.43457 5.47602 5.76364 5.95845 6.06115 6.07669 6.10100 6.19318 6.23525 6.29543 6.35883 6.39446 6.51986 6.61128 6.66262 6.83361 6.98736 7.15290 7.25449 7.38351 7.60630 7.76342 7.93164 8.04616 8.26906 8.50325 8.73505 8.94817 10.31561 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.020289 B = 0.011996 C = 0.008528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.700101 B = 2333.523600 C = 3282.681416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.086 3.914 3 Si 0.901 3.099 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.252 1.252 7 C -0.465 4.465 8 H 0.102 0.898 9 C 0.092 3.908 10 C -0.205 4.205 11 C -0.108 4.108 12 C -0.187 4.187 13 C -0.124 4.124 14 C 0.026 3.974 15 N -0.452 5.452 16 C 0.067 3.933 17 C -0.151 4.151 18 C -0.140 4.140 19 C -0.163 4.163 20 C 0.042 3.958 21 C -0.080 4.080 22 H 0.280 0.720 23 H 0.107 0.893 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.128 0.872 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.071 -6.330 1.607 8.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.129 4.129 3 Si 0.728 3.272 4 H -0.195 1.195 5 H -0.220 1.220 6 H -0.175 1.175 7 C -0.495 4.495 8 H 0.120 0.880 9 C 0.087 3.913 10 C -0.225 4.225 11 C -0.127 4.127 12 C -0.207 4.207 13 C -0.127 4.127 14 C -0.072 4.072 15 N -0.166 5.166 16 C -0.040 4.040 17 C -0.188 4.188 18 C -0.178 4.178 19 C -0.202 4.202 20 C -0.085 4.085 21 C -0.118 4.118 22 H 0.090 0.910 23 H 0.125 0.875 24 H 0.114 0.886 25 H 0.111 0.889 26 H 0.145 0.855 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.674 -5.994 2.154 8.530 hybrid contribution 0.390 0.500 -0.697 0.942 sum 6.064 -5.494 1.457 8.312 Atomic orbital electron populations 1.69647 1.07622 1.29519 1.39140 1.25920 0.94669 1.00754 0.91529 0.86463 0.80515 0.80613 0.79571 1.19514 1.21968 1.17504 1.19454 0.90352 0.95563 1.44116 0.88004 1.17215 0.93338 0.91281 0.89428 1.20816 0.94585 1.05810 1.01285 1.20293 0.94014 0.99053 0.99316 1.19701 0.97575 1.02699 1.00722 1.20188 0.94184 1.00458 0.97859 1.19605 0.92600 1.01883 0.93095 1.60383 1.02608 1.14743 1.38844 1.23656 0.94853 0.91953 0.93536 1.23375 1.01053 0.97199 0.97221 1.22742 1.00132 0.97880 0.97016 1.23460 1.00375 0.97239 0.99167 1.23206 0.89786 0.94970 1.00529 1.21147 0.96921 0.96189 0.97528 0.90958 0.87527 0.88565 0.88906 0.85498 0.90021 0.91576 0.90238 0.92167 0.90491 0.90976 0.90309 0.93008 0.91660 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.53 13.93 55.55 0.77 -21.76 16 2 C 0.09 2.28 5.47 -17.33 -0.09 2.19 16 3 Si 0.90 21.46 24.82 -169.99 -4.22 17.24 16 4 H -0.27 -6.19 6.52 56.52 0.37 -5.82 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.25 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.46 -12.26 8.19 -37.89 -0.31 -12.57 16 8 H 0.10 2.73 4.33 -52.49 -0.23 2.51 16 9 C 0.09 2.30 4.63 -106.53 -0.49 1.80 16 10 C -0.20 -4.92 7.18 -39.34 -0.28 -5.20 16 11 C -0.11 -2.33 9.98 -39.97 -0.40 -2.73 16 12 C -0.19 -3.91 10.03 -39.42 -0.40 -4.30 16 13 C -0.12 -2.62 6.24 -104.06 -0.65 -3.27 16 14 C 0.03 0.60 5.14 -82.97 -0.43 0.17 16 15 N -0.45 -9.35 5.26 -160.26 -0.84 -10.20 16 16 C 0.07 1.29 2.97 -66.90 -0.20 1.10 16 17 C -0.15 -2.32 7.26 -25.83 -0.19 -2.51 16 18 C -0.14 -2.11 8.09 -25.83 -0.21 -2.32 16 19 C -0.16 -3.00 6.00 -25.92 -0.16 -3.16 16 20 C 0.04 0.70 5.11 -2.55 -0.01 0.69 16 21 C -0.08 -1.37 7.04 -26.72 -0.19 -1.56 16 22 H 0.28 7.02 8.30 -40.82 -0.34 6.69 16 23 H 0.11 2.56 5.54 -52.49 -0.29 2.27 16 24 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 25 H 0.09 1.69 8.06 -52.48 -0.42 1.26 16 26 H 0.13 2.83 5.86 -51.93 -0.30 2.53 16 27 H 0.08 1.16 5.75 -51.93 -0.30 0.86 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.57 7.36 -51.93 -0.38 1.19 16 32 H 0.07 1.33 6.87 -51.93 -0.36 0.97 16 33 H 0.08 1.16 8.08 -51.93 -0.42 0.74 16 34 H 0.05 0.82 5.40 -51.93 -0.28 0.54 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 272.36 15.07 4.10 4.10 Total: -1.00 -27.54 272.36 -8.87 -36.41 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -4.69 Total: 5.88 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: -4.00 Total: -31.68 kcal Atomic # 7 Polarization: -31.89 SS G_CDS: -0.07 Total: -31.95 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.22 Total: 17.24 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.54 -8.87 -36.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260099684.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.055 kcal (2) G-P(sol) polarization free energy of solvation -27.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds