Wall clock time and date at job start Mon Mar 30 2020 05:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86797 * 119.99839 * 2 1 4 4 H 1.48501 * 109.47227 * 264.86815 * 3 2 1 5 5 H 1.48496 * 109.47351 * 24.86906 * 3 2 1 6 6 H 1.48502 * 109.47311 * 144.87035 * 3 2 1 7 7 C 1.39923 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99879 * 350.85674 * 7 2 1 9 9 C 1.41048 * 120.00322 * 170.59070 * 7 2 1 10 10 C 1.40583 * 120.18843 * 317.46945 * 9 7 2 11 11 C 1.36444 * 120.12567 * 180.11549 * 10 9 7 12 12 C 1.38931 * 120.35581 * 0.09574 * 11 10 9 13 13 C 1.37978 * 120.62592 * 359.97438 * 12 11 10 14 14 C 1.38805 * 120.52895 * 359.44869 * 13 12 11 15 15 N 1.39011 * 111.19467 * 181.16564 * 14 13 12 16 16 C 1.46898 * 111.00543 * 219.64031 * 15 14 13 17 17 C 1.53772 * 113.61930 * 151.98355 * 16 15 14 18 18 C 1.53956 * 87.02059 * 220.04905 * 17 16 15 19 19 C 1.53781 * 87.11262 * 25.36248 * 18 17 16 20 20 C 1.47925 * 107.98083 * 341.52178 * 15 14 13 21 21 C 1.51610 * 131.59305 * 179.35168 * 13 12 11 22 22 H 0.97002 * 120.00277 * 359.97438 * 1 2 3 23 23 H 1.08000 * 119.93484 * 0.13775 * 10 9 7 24 24 H 1.07998 * 119.81834 * 180.11696 * 11 10 9 25 25 H 1.08003 * 119.68574 * 179.97438 * 12 11 10 26 26 H 1.08999 * 112.84704 * 283.18426 * 16 15 14 27 27 H 1.09006 * 113.61308 * 334.56764 * 17 16 15 28 28 H 1.08995 * 113.62048 * 105.47395 * 17 16 15 29 29 H 1.09003 * 113.54165 * 270.80942 * 18 17 16 30 30 H 1.09005 * 113.66946 * 139.93308 * 18 17 16 31 31 H 1.08996 * 113.61797 * 220.09155 * 19 18 17 32 32 H 1.09000 * 113.69242 * 89.19820 * 19 18 17 33 33 H 1.08994 * 110.79592 * 145.61437 * 20 15 14 34 34 H 1.08998 * 110.79404 * 268.89993 * 20 15 14 35 35 H 1.08997 * 110.76505 * 314.28126 * 21 13 12 36 36 H 1.09001 * 110.76791 * 77.67656 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.5987 1.9838 -1.3945 5 1 1.3902 2.6815 0.5888 6 1 3.4819 1.4740 0.8056 7 6 2.0085 -1.2118 -0.0005 8 1 1.4787 -2.1412 0.1477 9 6 3.4047 -1.2199 -0.2002 10 6 3.9830 -0.3983 -1.1835 11 6 5.3336 -0.4090 -1.3772 12 6 6.1468 -1.2315 -0.6075 13 6 5.6033 -2.0481 0.3628 14 6 4.2347 -2.0534 0.5945 15 7 3.9031 -2.9235 1.6266 16 6 2.6630 -3.6506 1.3242 17 6 2.5800 -5.0323 1.9941 18 6 1.9602 -5.5429 0.6806 19 6 2.6957 -4.3904 -0.0236 20 6 5.0332 -3.8589 1.8162 21 6 6.2412 -3.0359 1.3199 22 1 -0.4851 0.8400 0.0004 23 1 3.3571 0.2428 -1.7865 24 1 5.7728 0.2256 -2.1327 25 1 7.2145 -1.2316 -0.7703 26 1 1.7700 -3.0420 1.4667 27 1 3.5538 -5.4691 2.2162 28 1 1.8965 -5.0660 2.8424 29 1 0.8744 -5.4528 0.6476 30 1 2.3131 -6.5311 0.3853 31 1 2.1054 -3.9065 -0.8017 32 1 3.7011 -4.6500 -0.3549 33 1 5.1449 -4.1227 2.8678 34 1 4.9022 -4.7528 1.2064 35 1 6.9617 -3.6673 0.8001 36 1 6.7122 -2.5164 2.1544 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260099684.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:28 Heat of formation + Delta-G solvation = 45.461056 kcal Electronic energy + Delta-G solvation = -18063.795519 eV Core-core repulsion = 15512.824379 eV Total energy + Delta-G solvation = -2550.971140 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.93409 -39.04881 -36.75281 -35.17496 -32.94672 -30.43990 -29.73251 -27.09376 -26.49496 -24.91637 -23.59773 -22.17661 -21.68418 -19.68415 -19.00244 -17.61588 -17.10655 -16.91783 -16.44108 -15.67918 -15.44388 -14.92965 -14.77616 -14.07857 -13.85316 -13.59554 -13.53837 -13.41157 -12.94275 -12.76062 -12.57176 -12.49503 -12.13807 -12.08691 -11.87838 -11.59182 -11.51871 -11.37156 -10.99762 -10.92663 -10.32888 -9.24975 -8.68053 -8.33790 -6.28835 0.80896 0.81950 1.26408 1.36302 1.46034 2.17902 2.71429 3.13397 3.45201 3.68973 3.79649 3.87606 3.95631 4.05677 4.11407 4.38117 4.48801 4.59776 4.66698 4.74183 4.80104 4.86026 4.90244 4.98569 5.03645 5.06461 5.12647 5.15962 5.24133 5.40642 5.44221 5.61609 5.69738 5.86440 6.00836 6.25006 6.30475 6.48592 6.63741 6.89443 7.01817 8.40275 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.020289 B = 0.011996 C = 0.008528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.700101 B = 2333.523600 C = 3282.681416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.045 3.955 3 Si 0.949 3.051 4 H -0.258 1.258 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.482 4.482 8 H 0.081 0.919 9 C 0.059 3.941 10 C -0.218 4.218 11 C -0.120 4.120 12 C -0.172 4.172 13 C -0.138 4.138 14 C 0.019 3.981 15 N -0.473 5.473 16 C 0.056 3.944 17 C -0.132 4.132 18 C -0.125 4.125 19 C -0.161 4.161 20 C 0.042 3.958 21 C -0.074 4.074 22 H 0.283 0.717 23 H 0.097 0.903 24 H 0.126 0.874 25 H 0.130 0.870 26 H 0.083 0.917 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.393 -7.929 2.242 12.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.164 4.164 3 Si 0.775 3.225 4 H -0.184 1.184 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.514 4.514 8 H 0.099 0.901 9 C 0.055 3.945 10 C -0.238 4.238 11 C -0.139 4.139 12 C -0.191 4.191 13 C -0.142 4.142 14 C -0.079 4.079 15 N -0.186 5.186 16 C -0.051 4.051 17 C -0.169 4.169 18 C -0.163 4.163 19 C -0.200 4.200 20 C -0.083 4.083 21 C -0.111 4.111 22 H 0.093 0.907 23 H 0.115 0.885 24 H 0.144 0.856 25 H 0.148 0.852 26 H 0.101 0.899 27 H 0.124 0.876 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.124 0.876 34 H 0.084 0.916 35 H 0.115 0.885 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.006 -7.602 2.787 12.111 hybrid contribution -0.425 0.896 -0.888 1.332 sum 8.581 -6.706 1.898 11.055 Atomic orbital electron populations 1.69700 1.08496 1.30058 1.42555 1.26476 0.95209 1.02940 0.91806 0.85731 0.78744 0.78340 0.79685 1.18360 1.21139 1.19283 1.19494 0.91465 0.95018 1.45384 0.90130 1.17391 0.93057 0.93165 0.90886 1.20921 0.95920 1.05726 1.01254 1.20661 0.93094 0.99835 1.00320 1.20219 0.99365 1.00526 0.98992 1.20802 0.93791 1.01087 0.98485 1.19890 0.93558 1.01513 0.92982 1.60254 1.04301 1.16099 1.37976 1.23476 0.93079 0.93085 0.95426 1.23322 1.02517 0.93701 0.97369 1.22689 0.99744 0.97989 0.95901 1.23374 1.00351 0.98527 0.97791 1.23383 0.87931 0.94527 1.02493 1.21250 0.97300 0.95494 0.97057 0.90710 0.88549 0.85561 0.85217 0.89915 0.87578 0.90630 0.90586 0.89130 0.94222 0.90647 0.87627 0.91650 0.88538 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.58 13.93 21.83 0.30 -50.28 16 2 C 0.05 2.52 5.47 85.24 0.47 2.99 16 3 Si 0.95 45.91 24.82 68.60 1.70 47.61 16 4 H -0.26 -11.83 6.52 99.48 0.65 -11.18 16 5 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 6 H -0.27 -13.49 7.11 99.48 0.71 -12.78 16 7 C -0.48 -27.06 8.19 23.37 0.19 -26.86 16 8 H 0.08 4.73 4.33 -2.91 -0.01 4.72 16 9 C 0.06 3.04 4.63 -21.10 -0.10 2.94 16 10 C -0.22 -10.55 7.18 22.42 0.16 -10.39 16 11 C -0.12 -4.96 9.98 22.02 0.22 -4.74 16 12 C -0.17 -6.54 10.03 22.37 0.22 -6.31 16 13 C -0.14 -5.45 6.24 -19.50 -0.12 -5.58 16 14 C 0.02 0.87 5.14 39.06 0.20 1.07 16 15 N -0.47 -19.04 5.26 -660.96 -3.48 -22.52 16 16 C 0.06 2.20 2.97 45.44 0.13 2.34 16 17 C -0.13 -3.75 7.26 31.18 0.23 -3.52 16 18 C -0.13 -3.57 8.09 31.18 0.25 -3.32 16 19 C -0.16 -5.96 6.00 31.12 0.19 -5.77 16 20 C 0.04 1.24 5.11 86.57 0.44 1.69 16 21 C -0.07 -2.17 7.04 30.60 0.22 -1.95 16 22 H 0.28 15.05 8.30 -92.71 -0.77 14.28 16 23 H 0.10 4.74 5.54 -2.91 -0.02 4.72 16 24 H 0.13 4.36 8.06 -2.91 -0.02 4.33 16 25 H 0.13 3.99 8.06 -2.91 -0.02 3.96 16 26 H 0.08 3.97 5.86 -2.39 -0.01 3.96 16 27 H 0.11 2.52 5.75 -2.38 -0.01 2.51 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.04 1.72 7.36 -2.39 -0.02 1.71 16 32 H 0.08 2.69 6.87 -2.39 -0.02 2.67 16 33 H 0.11 2.58 8.08 -2.39 -0.02 2.56 16 34 H 0.07 1.77 5.40 -2.39 -0.01 1.76 16 35 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -63.23 272.36 2.26 -60.97 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 1.03 Total: 21.63 kcal Atomic # 6 Polarization: -60.13 SS G_CDS: 2.70 Total: -57.42 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -3.17 Total: -72.80 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.70 Total: 47.61 kcal Total: -63.23 2.26 -60.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260099684.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.436 kcal (2) G-P(sol) polarization free energy of solvation -63.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds