Wall clock time and date at job start Mon Mar 30 2020 05:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86801 * 120.00091 * 2 1 4 4 H 1.48501 * 109.47114 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47305 * 300.00016 * 3 2 1 6 6 H 1.48498 * 109.46903 * 60.00119 * 3 2 1 7 7 C 1.39865 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00590 * 197.96942 * 7 2 1 9 9 C 1.41142 * 120.00078 * 17.97128 * 7 2 1 10 10 C 1.40886 * 120.15649 * 204.60720 * 9 7 2 11 11 C 1.36342 * 119.83522 * 180.02562 * 10 9 7 12 12 C 1.39570 * 120.16100 * 0.02562 * 11 10 9 13 13 N 1.38852 * 119.84018 * 179.97438 * 12 11 10 14 14 C 1.47347 * 110.99970 * 179.97438 * 13 12 11 15 15 C 1.53933 * 108.26208 * 188.96106 * 14 13 12 16 16 C 1.54133 * 110.96271 * 72.24861 * 15 14 13 17 17 C 1.56058 * 84.63384 * 280.82637 * 16 15 14 18 18 C 1.54354 * 110.65121 * 338.25129 * 15 14 13 19 19 C 1.47338 * 111.00378 * 56.58567 * 13 12 11 20 20 C 1.39563 * 120.31329 * 0.25015 * 12 11 10 21 21 C 1.36343 * 120.16396 * 359.48392 * 20 12 11 22 22 H 0.96995 * 119.99968 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.08411 * 0.04148 * 10 9 7 24 24 H 1.08000 * 119.92081 * 179.97438 * 11 10 9 25 25 H 1.09000 * 109.70149 * 69.27026 * 14 13 12 26 26 H 1.08997 * 109.73897 * 308.67589 * 14 13 12 27 27 H 1.09004 * 114.45460 * 205.39270 * 15 14 13 28 28 H 1.08995 * 113.89924 * 34.71001 * 16 15 14 29 29 H 1.08995 * 113.90113 * 166.54063 * 16 15 14 30 30 H 1.08990 * 116.32920 * 211.90177 * 17 16 15 31 31 H 1.08994 * 113.92649 * 193.77458 * 18 15 14 32 32 H 1.09001 * 113.92191 * 325.67565 * 18 15 14 33 33 H 1.09003 * 109.70469 * 290.73259 * 19 13 12 34 34 H 1.09002 * 109.70958 * 51.33974 * 19 13 12 35 35 H 1.08003 * 119.91631 * 179.72423 * 20 12 11 36 36 H 1.08001 * 120.07987 * 180.26893 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3464 0.0006 5 1 1.8844 2.3964 -1.2124 6 1 1.8843 2.3964 1.2125 7 6 2.0084 -1.2112 0.0005 8 1 3.0489 -1.2340 0.2891 9 6 1.3544 -2.4039 -0.3761 10 6 1.8267 -3.6472 0.0887 11 6 1.1902 -4.7954 -0.2796 12 6 0.0737 -4.7411 -1.1153 13 7 -0.5690 -5.9145 -1.4867 14 6 -1.7171 -5.6321 -2.3660 15 6 -2.5126 -6.9365 -2.5545 16 6 -3.2761 -7.3075 -1.2681 17 6 -1.8938 -7.8385 -0.7756 18 6 -1.6237 -8.1636 -2.2602 19 6 -0.9997 -6.6782 -0.3026 20 6 -0.3962 -3.5134 -1.5842 21 6 0.2271 -2.3568 -1.2197 22 1 -0.4850 0.8400 -0.0004 23 1 2.6906 -3.6908 0.7354 24 1 1.5513 -5.7492 0.0756 25 1 -1.3608 -5.2760 -3.3326 26 1 -2.3545 -4.8759 -1.9079 27 1 -3.0913 -6.9827 -3.4771 28 1 -3.6447 -6.4471 -0.7096 29 1 -4.0302 -8.0816 -1.4098 30 1 -1.9170 -8.6944 -0.1013 31 1 -2.0479 -9.1083 -2.6000 32 1 -0.5807 -8.0332 -2.5488 33 1 -0.1270 -7.0750 0.2162 34 1 -1.5632 -6.0296 0.3682 35 1 -1.2580 -3.4792 -2.2342 36 1 -0.1404 -1.4072 -1.5798 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260102544.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:50 Heat of formation + Delta-G solvation = 58.404606 kcal Electronic energy + Delta-G solvation = -17214.696029 eV Core-core repulsion = 14664.286164 eV Total energy + Delta-G solvation = -2550.409865 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.64168 -37.65064 -34.72470 -32.81989 -30.25541 -28.87741 -28.80494 -25.43180 -25.35097 -23.12500 -22.53374 -20.28789 -19.91258 -17.74323 -17.23014 -16.66464 -15.33631 -14.86859 -14.42229 -14.17542 -13.96446 -13.52188 -13.08672 -12.75850 -12.35635 -12.19954 -11.88421 -11.73459 -11.55853 -11.15122 -11.07381 -10.87182 -10.71541 -10.61202 -10.16689 -10.02806 -9.80221 -9.70323 -9.36710 -9.07935 -8.43710 -7.55208 -6.86637 -6.66230 -4.24835 2.73455 3.07144 3.09213 3.13481 3.17678 3.94716 4.41640 4.62865 4.71287 4.84614 4.85946 4.96084 5.44023 5.60252 5.69980 5.77448 5.81695 5.86388 6.00956 6.12061 6.15851 6.20878 6.24073 6.33618 6.35770 6.50615 6.53200 6.87463 6.90398 7.10298 7.25311 7.45049 7.52029 7.64836 8.05414 8.18917 8.21277 8.38357 8.65930 8.91491 9.02314 10.20554 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.053343 B = 0.005263 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.781163 B = 5319.079864 C = 5570.668880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.461 4.461 8 H 0.077 0.923 9 C 0.098 3.902 10 C -0.211 4.211 11 C -0.096 4.096 12 C -0.035 4.035 13 N -0.470 5.470 14 C 0.068 3.932 15 C -0.116 4.116 16 C -0.143 4.143 17 C -0.116 4.116 18 C -0.125 4.125 19 C 0.068 3.932 20 C -0.136 4.136 21 C -0.148 4.148 22 H 0.279 0.721 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.039 0.961 35 H 0.093 0.907 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.691 -9.056 -2.566 10.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.491 4.491 8 H 0.095 0.905 9 C 0.095 3.905 10 C -0.231 4.231 11 C -0.116 4.116 12 C -0.130 4.130 13 N -0.187 5.187 14 C -0.059 4.059 15 C -0.135 4.135 16 C -0.181 4.181 17 C -0.134 4.134 18 C -0.163 4.163 19 C -0.058 4.058 20 C -0.157 4.157 21 C -0.168 4.168 22 H 0.090 0.910 23 H 0.111 0.889 24 H 0.108 0.892 25 H 0.095 0.905 26 H 0.063 0.937 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.111 0.889 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.565 -9.210 -2.811 10.657 hybrid contribution -0.280 1.312 0.482 1.426 sum -4.845 -7.897 -2.330 9.554 Atomic orbital electron populations 1.69868 1.07563 1.28980 1.35874 1.25890 0.94694 1.01267 0.92366 0.86297 0.81046 0.81088 0.78501 1.18406 1.19750 1.20071 1.19543 0.98143 0.91330 1.40036 0.90480 1.17627 0.91553 0.92077 0.89198 1.20645 1.03562 0.92729 1.06133 1.19947 0.95484 0.96789 0.99428 1.18232 0.99795 0.87574 1.07441 1.59889 1.23472 1.19899 1.15484 1.22235 0.91235 0.94631 0.97848 1.22866 0.97394 0.95634 0.97605 1.23671 0.95938 1.00715 0.97733 1.23203 0.95402 0.97835 0.96991 1.22984 1.01308 0.96321 0.95682 1.22286 0.97651 0.93700 0.92143 1.20654 0.99782 0.92524 1.02698 1.20949 0.99158 0.96583 1.00079 0.91047 0.88865 0.89182 0.90513 0.93725 0.90055 0.91768 0.90245 0.89979 0.90943 0.89848 0.90644 0.94269 0.88858 0.86470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.78 10.97 55.54 0.61 -20.17 16 2 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16 3 Si 0.91 18.79 29.60 -169.99 -5.03 13.76 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.46 -12.33 9.03 -37.87 -0.34 -12.67 16 8 H 0.08 1.99 7.91 -52.48 -0.41 1.58 16 9 C 0.10 2.64 5.57 -106.79 -0.60 2.05 16 10 C -0.21 -5.23 9.74 -39.26 -0.38 -5.61 16 11 C -0.10 -2.21 9.21 -39.77 -0.37 -2.58 16 12 C -0.03 -0.78 5.61 -83.69 -0.47 -1.25 16 13 N -0.47 -8.85 3.94 -169.10 -0.67 -9.52 16 14 C 0.07 1.14 4.28 -3.09 -0.01 1.13 16 15 C -0.12 -1.57 5.04 -89.15 -0.45 -2.02 16 16 C -0.14 -1.82 7.45 -24.51 -0.18 -2.00 16 17 C -0.12 -1.56 5.15 -88.10 -0.45 -2.01 16 18 C -0.13 -1.64 7.31 -25.32 -0.19 -1.82 16 19 C 0.07 1.15 5.16 -3.10 -0.02 1.13 16 20 C -0.14 -3.22 8.76 -39.77 -0.35 -3.57 16 21 C -0.15 -3.87 8.64 -39.26 -0.34 -4.21 16 22 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 23 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 24 H 0.09 1.86 7.32 -52.49 -0.38 1.48 16 25 H 0.08 1.29 7.90 -51.93 -0.41 0.88 16 26 H 0.04 0.80 6.72 -51.93 -0.35 0.45 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.88 8.04 -51.93 -0.42 0.46 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.24 7.49 -51.93 -0.39 0.85 16 33 H 0.08 1.24 7.30 -51.93 -0.38 0.86 16 34 H 0.04 0.71 8.06 -51.93 -0.42 0.29 16 35 H 0.09 2.01 5.76 -52.48 -0.30 1.71 16 36 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 LS Contribution 283.49 15.07 4.27 4.27 Total: -1.00 -27.21 283.49 -10.08 -37.30 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.04 Total: 6.01 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: -4.23 Total: -31.64 kcal Atomic # 7 Polarization: -29.63 SS G_CDS: -0.06 Total: -29.69 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.21 -10.08 -37.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260102544.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.702 kcal (2) G-P(sol) polarization free energy of solvation -27.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds