Wall clock time and date at job start Mon Mar 30 2020 05:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86801 * 120.00091 * 2 1 4 4 H 1.48501 * 109.47114 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47305 * 300.00016 * 3 2 1 6 6 H 1.48498 * 109.46903 * 60.00119 * 3 2 1 7 7 C 1.39865 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00590 * 197.96942 * 7 2 1 9 9 C 1.41142 * 120.00078 * 17.97128 * 7 2 1 10 10 C 1.40886 * 120.15649 * 204.60720 * 9 7 2 11 11 C 1.36342 * 119.83522 * 180.02562 * 10 9 7 12 12 C 1.39570 * 120.16100 * 0.02562 * 11 10 9 13 13 N 1.38852 * 119.84018 * 179.97438 * 12 11 10 14 14 C 1.47347 * 110.99970 * 179.97438 * 13 12 11 15 15 C 1.53933 * 108.26208 * 188.96106 * 14 13 12 16 16 C 1.54133 * 110.96271 * 72.24861 * 15 14 13 17 17 C 1.56058 * 84.63384 * 280.82637 * 16 15 14 18 18 C 1.54354 * 110.65121 * 338.25129 * 15 14 13 19 19 C 1.47338 * 111.00378 * 56.58567 * 13 12 11 20 20 C 1.39563 * 120.31329 * 0.25015 * 12 11 10 21 21 C 1.36343 * 120.16396 * 359.48392 * 20 12 11 22 22 H 0.96995 * 119.99968 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.08411 * 0.04148 * 10 9 7 24 24 H 1.08000 * 119.92081 * 179.97438 * 11 10 9 25 25 H 1.09000 * 109.70149 * 69.27026 * 14 13 12 26 26 H 1.08997 * 109.73897 * 308.67589 * 14 13 12 27 27 H 1.09004 * 114.45460 * 205.39270 * 15 14 13 28 28 H 1.08995 * 113.89924 * 34.71001 * 16 15 14 29 29 H 1.08995 * 113.90113 * 166.54063 * 16 15 14 30 30 H 1.08990 * 116.32920 * 211.90177 * 17 16 15 31 31 H 1.08994 * 113.92649 * 193.77458 * 18 15 14 32 32 H 1.09001 * 113.92191 * 325.67565 * 18 15 14 33 33 H 1.09003 * 109.70469 * 290.73259 * 19 13 12 34 34 H 1.09002 * 109.70958 * 51.33974 * 19 13 12 35 35 H 1.08003 * 119.91631 * 179.72423 * 20 12 11 36 36 H 1.08001 * 120.07987 * 180.26893 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3464 0.0006 5 1 1.8844 2.3964 -1.2124 6 1 1.8843 2.3964 1.2125 7 6 2.0084 -1.2112 0.0005 8 1 3.0489 -1.2340 0.2891 9 6 1.3544 -2.4039 -0.3761 10 6 1.8267 -3.6472 0.0887 11 6 1.1902 -4.7954 -0.2796 12 6 0.0737 -4.7411 -1.1153 13 7 -0.5690 -5.9145 -1.4867 14 6 -1.7171 -5.6321 -2.3660 15 6 -2.5126 -6.9365 -2.5545 16 6 -3.2761 -7.3075 -1.2681 17 6 -1.8938 -7.8385 -0.7756 18 6 -1.6237 -8.1636 -2.2602 19 6 -0.9997 -6.6782 -0.3026 20 6 -0.3962 -3.5134 -1.5842 21 6 0.2271 -2.3568 -1.2197 22 1 -0.4850 0.8400 -0.0004 23 1 2.6906 -3.6908 0.7354 24 1 1.5513 -5.7492 0.0756 25 1 -1.3608 -5.2760 -3.3326 26 1 -2.3545 -4.8759 -1.9079 27 1 -3.0913 -6.9827 -3.4771 28 1 -3.6447 -6.4471 -0.7096 29 1 -4.0302 -8.0816 -1.4098 30 1 -1.9170 -8.6944 -0.1013 31 1 -2.0479 -9.1083 -2.6000 32 1 -0.5807 -8.0332 -2.5488 33 1 -0.1270 -7.0750 0.2162 34 1 -1.5632 -6.0296 0.3682 35 1 -1.2580 -3.4792 -2.2342 36 1 -0.1404 -1.4072 -1.5798 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260102544.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:50 Heat of formation + Delta-G solvation = 45.121832 kcal Electronic energy + Delta-G solvation = -17215.272014 eV Core-core repulsion = 14664.286164 eV Total energy + Delta-G solvation = -2550.985850 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.93071 -39.40195 -36.41126 -34.59703 -31.92209 -30.67044 -30.38434 -27.10206 -26.43419 -24.73983 -23.96958 -22.00156 -21.65664 -19.33314 -18.71950 -18.12487 -17.07481 -16.28359 -16.03278 -15.65469 -15.53533 -14.88220 -14.63182 -14.42770 -14.05514 -13.70762 -13.58080 -13.21862 -12.95563 -12.79724 -12.68531 -12.55351 -12.32255 -11.91585 -11.62749 -11.38057 -11.32306 -11.11309 -11.00990 -10.72993 -10.13097 -9.49472 -8.73745 -8.49861 -6.23567 0.90572 1.11880 1.37629 1.48001 1.53202 2.21036 2.66371 3.11035 3.60133 3.69619 3.72354 3.76485 3.82048 4.22885 4.35317 4.40564 4.52300 4.57597 4.61730 4.79999 4.83538 4.93964 4.94070 5.02500 5.06486 5.13075 5.18088 5.28952 5.33266 5.39842 5.44789 5.62616 5.70539 5.79705 6.08492 6.28050 6.43284 6.52548 6.73412 6.94385 7.08777 8.34254 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.053343 B = 0.005263 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.781163 B = 5319.079864 C = 5570.668880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.499 4.499 8 H 0.075 0.925 9 C 0.064 3.936 10 C -0.221 4.221 11 C -0.102 4.102 12 C -0.020 4.020 13 N -0.473 5.473 14 C 0.063 3.937 15 C -0.117 4.117 16 C -0.134 4.134 17 C -0.115 4.115 18 C -0.116 4.116 19 C 0.066 3.934 20 C -0.144 4.144 21 C -0.168 4.168 22 H 0.287 0.713 23 H 0.101 0.899 24 H 0.115 0.885 25 H 0.072 0.928 26 H 0.030 0.970 27 H 0.104 0.896 28 H 0.048 0.952 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.020 0.980 35 H 0.109 0.891 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.492 -10.777 -2.985 12.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.528 4.528 8 H 0.093 0.907 9 C 0.061 3.939 10 C -0.241 4.241 11 C -0.122 4.122 12 C -0.117 4.117 13 N -0.190 5.190 14 C -0.064 4.064 15 C -0.136 4.136 16 C -0.171 4.171 17 C -0.134 4.134 18 C -0.154 4.154 19 C -0.060 4.060 20 C -0.165 4.165 21 C -0.188 4.188 22 H 0.097 0.903 23 H 0.119 0.881 24 H 0.133 0.867 25 H 0.090 0.910 26 H 0.048 0.952 27 H 0.122 0.878 28 H 0.067 0.933 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.039 0.961 35 H 0.127 0.873 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.378 -10.960 -3.232 12.629 hybrid contribution -0.094 1.679 0.584 1.780 sum -5.472 -9.281 -2.648 11.095 Atomic orbital electron populations 1.69919 1.09034 1.30347 1.36463 1.26745 0.95461 1.04515 0.91301 0.85163 0.79436 0.76210 0.78914 1.18152 1.18921 1.19044 1.19771 0.98339 0.92586 1.42147 0.90726 1.17969 0.92493 0.93179 0.90250 1.20850 1.04042 0.92867 1.06359 1.20206 0.95443 0.97240 0.99343 1.18485 0.99291 0.88511 1.05398 1.59816 1.24673 1.17992 1.16552 1.22305 0.90636 0.96663 0.96824 1.22865 0.97571 0.93837 0.99280 1.23694 0.96019 1.00972 0.96463 1.23198 0.95135 0.97083 0.97956 1.23001 1.00194 0.97310 0.94884 1.22335 0.98340 0.94376 0.90969 1.20860 1.00119 0.92442 1.03066 1.20900 0.99995 0.96775 1.01166 0.90284 0.88106 0.86735 0.90998 0.95207 0.87766 0.93295 0.87084 0.87486 0.87747 0.91846 0.90489 0.96125 0.87265 0.88178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.75 10.97 21.82 0.24 -44.51 16 2 C 0.03 1.74 5.13 85.23 0.44 2.18 16 3 Si 0.98 39.15 29.60 68.60 2.03 41.18 16 4 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 5 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 6 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 7 C -0.50 -27.75 9.03 23.38 0.21 -27.54 16 8 H 0.07 4.01 7.91 -2.91 -0.02 3.99 16 9 C 0.06 3.57 5.57 -21.27 -0.12 3.45 16 10 C -0.22 -11.27 9.74 22.48 0.22 -11.05 16 11 C -0.10 -4.70 9.21 22.15 0.20 -4.50 16 12 C -0.02 -0.92 5.61 38.67 0.22 -0.70 16 13 N -0.47 -17.39 3.94 -688.91 -2.71 -20.11 16 14 C 0.06 2.04 4.28 86.53 0.37 2.41 16 15 C -0.12 -2.80 5.04 -9.84 -0.05 -2.85 16 16 C -0.13 -2.93 7.45 32.03 0.24 -2.69 16 17 C -0.12 -2.72 5.15 -9.16 -0.05 -2.77 16 18 C -0.12 -2.59 7.31 31.51 0.23 -2.36 16 19 C 0.07 2.11 5.16 86.53 0.45 2.55 16 20 C -0.14 -7.00 8.76 22.15 0.19 -6.81 16 21 C -0.17 -9.21 8.64 22.48 0.19 -9.02 16 22 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 23 H 0.10 4.83 8.06 -2.91 -0.02 4.80 16 24 H 0.11 4.62 7.32 -2.91 -0.02 4.60 16 25 H 0.07 2.37 7.90 -2.39 -0.02 2.35 16 26 H 0.03 1.06 6.72 -2.39 -0.02 1.04 16 27 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.05 1.23 8.04 -2.39 -0.02 1.21 16 29 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 1.70 7.49 -2.39 -0.02 1.68 16 33 H 0.08 2.41 7.30 -2.39 -0.02 2.39 16 34 H 0.02 0.73 8.06 -2.39 -0.02 0.71 16 35 H 0.11 4.82 5.76 -2.91 -0.02 4.80 16 36 H 0.10 5.72 6.16 -2.91 -0.02 5.71 16 Total: -1.00 -60.65 283.49 3.36 -57.29 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 1.06 Total: 25.84 kcal Atomic # 6 Polarization: -62.44 SS G_CDS: 2.75 Total: -59.69 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: -2.48 Total: -64.62 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -60.65 3.36 -57.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260102544.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.409 kcal (2) G-P(sol) polarization free energy of solvation -60.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds