Wall clock time and date at job start Mon Mar 30 2020 05:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86805 * 119.99861 * 2 1 4 4 H 1.48489 * 109.47178 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.46891 * 120.00189 * 3 2 1 6 6 H 1.48502 * 109.46818 * 239.99547 * 3 2 1 7 7 C 1.39928 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99885 * 154.41667 * 7 2 1 9 9 C 1.41043 * 120.00272 * 334.42015 * 7 2 1 10 10 C 1.40730 * 120.30174 * 334.29894 * 9 7 2 11 11 C 1.36451 * 119.94531 * 179.73840 * 10 9 7 12 12 C 1.38902 * 120.59665 * 0.54012 * 11 10 9 13 13 C 1.38158 * 120.62970 * 359.71031 * 12 11 10 14 14 C 1.38757 * 120.02638 * 0.02899 * 13 12 11 15 15 N 1.38731 * 120.29596 * 179.97438 * 14 13 12 16 16 C 1.47349 * 110.99984 * 63.43728 * 15 14 13 17 17 C 1.53962 * 108.69156 * 189.97007 * 16 15 14 18 18 C 1.54133 * 111.83837 * 70.05305 * 17 16 15 19 19 C 1.54140 * 85.28544 * 282.13551 * 18 17 16 20 20 C 1.54351 * 86.25694 * 328.07410 * 19 18 17 21 21 C 1.47345 * 111.00010 * 300.02037 * 15 14 13 22 22 H 0.96995 * 120.00335 * 174.30021 * 1 2 3 23 23 H 1.07998 * 120.03029 * 359.96884 * 10 9 7 24 24 H 1.07998 * 119.70289 * 180.27499 * 11 10 9 25 25 H 1.07999 * 119.68881 * 179.73841 * 12 11 10 26 26 H 1.08001 * 119.99438 * 179.97438 * 13 12 11 27 27 H 1.09003 * 109.70088 * 308.65229 * 16 15 14 28 28 H 1.08995 * 109.70212 * 69.26484 * 16 15 14 29 29 H 1.09007 * 114.85873 * 204.48037 * 17 16 15 30 30 H 1.09007 * 113.90368 * 168.05136 * 18 17 16 31 31 H 1.08997 * 113.90704 * 36.22576 * 18 17 16 32 32 H 1.08998 * 115.67096 * 211.29393 * 19 18 17 33 33 H 1.09001 * 113.92537 * 145.92582 * 20 19 18 34 34 H 1.09001 * 113.92687 * 277.82799 * 20 19 18 35 35 H 1.09000 * 109.70425 * 290.72853 * 21 15 14 36 36 H 1.08998 * 109.70416 * 51.30422 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 1.2778 2.7464 -0.0006 5 1 3.0966 1.6964 1.2125 6 1 3.0966 1.6964 -1.2125 7 6 2.0084 -1.2118 0.0005 8 1 3.0090 -1.2579 -0.4033 9 6 1.4069 -2.3732 0.5284 10 6 0.3994 -2.2696 1.5056 11 6 -0.1813 -3.3978 2.0074 12 6 0.2202 -4.6538 1.5708 13 6 1.2106 -4.7838 0.6164 14 6 1.8150 -3.6537 0.0845 15 7 2.8105 -3.7779 -0.8738 16 6 2.2863 -4.4006 -2.1020 17 6 3.4697 -4.7420 -3.0259 18 6 4.3183 -5.9007 -2.4663 19 6 4.9124 -4.8396 -1.5192 20 6 4.6916 -3.8351 -2.6701 21 6 3.9540 -4.5459 -0.3509 22 1 -0.4850 -0.8358 -0.0834 23 1 0.0835 -1.2979 1.8552 24 1 -0.9572 -3.3136 2.7539 25 1 -0.2464 -5.5371 1.9811 26 1 1.5152 -5.7655 0.2846 27 1 1.7620 -5.3229 -1.8515 28 1 1.6033 -3.7127 -2.6002 29 1 3.2200 -4.8082 -4.0849 30 1 5.0355 -6.3073 -3.1794 31 1 3.7360 -6.6695 -1.9585 32 1 5.9493 -4.9985 -1.2232 33 1 4.4286 -2.8313 -2.3364 34 1 5.4805 -3.8441 -3.4223 35 1 4.4711 -3.9625 0.4109 36 1 3.6012 -5.4828 0.0803 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260110546.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:53 Heat of formation + Delta-G solvation = 52.223425 kcal Electronic energy + Delta-G solvation = -17759.777399 eV Core-core repulsion = 15209.099498 eV Total energy + Delta-G solvation = -2550.677901 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.43625 -37.71728 -34.26276 -33.55301 -29.34565 -29.27074 -28.33040 -25.26731 -25.03546 -23.48655 -21.81732 -20.94537 -19.92994 -17.87752 -17.37877 -16.36367 -15.09358 -14.63680 -14.19964 -14.00335 -13.86163 -13.68901 -13.24186 -12.63438 -12.41009 -12.25729 -11.92869 -11.65801 -11.45792 -11.17445 -10.81382 -10.64036 -10.54574 -10.37055 -10.20191 -9.94262 -9.73434 -9.57037 -9.46372 -8.96696 -7.60863 -7.49534 -7.37804 -7.09868 -4.33202 2.73354 2.81871 3.19858 3.32233 3.39996 4.05881 4.58639 4.65238 4.85974 4.96300 5.01774 5.10898 5.44454 5.71528 5.75423 5.88815 5.98154 6.03308 6.05341 6.11403 6.23881 6.24650 6.28384 6.43873 6.48017 6.50815 6.71858 6.75547 6.94341 7.17570 7.28821 7.55776 7.77091 7.83405 7.84458 7.98796 8.18124 8.32352 8.48505 8.94460 9.05003 10.08535 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.020170 B = 0.009656 C = 0.007158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.847154 B = 2899.162755 C = 3910.684795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.035 3.965 3 Si 1.064 2.936 4 H -0.276 1.276 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.484 4.484 8 H 0.087 0.913 9 C 0.117 3.883 10 C -0.215 4.215 11 C -0.084 4.084 12 C -0.257 4.257 13 C -0.101 4.101 14 C -0.049 4.049 15 N -0.458 5.458 16 C 0.078 3.922 17 C -0.116 4.116 18 C -0.141 4.141 19 C -0.115 4.115 20 C -0.125 4.125 21 C 0.072 3.928 22 H 0.299 0.701 23 H 0.106 0.894 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.027 0.973 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.176 -5.308 -3.591 8.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.187 4.187 3 Si 0.887 3.113 4 H -0.201 1.201 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.511 4.511 8 H 0.105 0.895 9 C 0.113 3.887 10 C -0.235 4.235 11 C -0.102 4.102 12 C -0.277 4.277 13 C -0.121 4.121 14 C -0.144 4.144 15 N -0.179 5.179 16 C -0.049 4.049 17 C -0.135 4.135 18 C -0.178 4.178 19 C -0.133 4.133 20 C -0.163 4.163 21 C -0.055 4.055 22 H 0.112 0.888 23 H 0.124 0.876 24 H 0.105 0.895 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.045 0.955 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 6.088 -3.168 -3.669 7.782 hybrid contribution -0.219 -2.761 0.213 2.778 sum 5.868 -5.929 -3.457 9.030 Atomic orbital electron populations 1.70473 1.08306 1.34253 1.28931 1.27082 0.95672 1.04463 0.91481 0.83657 0.75672 0.73882 0.78040 1.20081 1.20070 1.20052 1.20507 1.03511 0.93014 1.34117 0.89515 1.17465 0.90073 0.91593 0.89536 1.20893 1.03681 0.97189 1.01746 1.20359 0.98222 0.93191 0.98457 1.20100 1.05284 0.95743 1.06597 1.21011 0.97191 0.96394 0.97551 1.18376 1.01678 0.92815 1.01507 1.59509 1.06764 1.47947 1.03633 1.22158 0.94781 0.96958 0.91017 1.23208 0.95178 0.96692 0.98423 1.23293 0.99345 0.96054 0.99152 1.22841 0.98313 0.97152 0.95035 1.23350 0.96498 0.99723 0.96701 1.22238 0.91963 0.95935 0.95332 0.88796 0.87624 0.89476 0.89718 0.89896 0.95467 0.90593 0.90189 0.90436 0.92241 0.90379 0.89168 0.91334 0.90915 0.95146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.03 12.33 55.55 0.68 -20.34 16 2 C 0.03 0.87 4.93 -17.32 -0.09 0.79 16 3 Si 1.06 21.66 30.00 -169.99 -5.10 16.56 16 4 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.48 -12.67 8.61 -37.89 -0.33 -13.00 16 8 H 0.09 2.28 7.67 -52.48 -0.40 1.88 16 9 C 0.12 3.07 5.31 -106.63 -0.57 2.50 16 10 C -0.22 -5.51 7.90 -39.29 -0.31 -5.82 16 11 C -0.08 -1.97 9.97 -39.98 -0.40 -2.36 16 12 C -0.26 -5.85 10.03 -39.37 -0.40 -6.25 16 13 C -0.10 -2.31 8.34 -39.42 -0.33 -2.64 16 14 C -0.05 -1.17 4.76 -83.29 -0.40 -1.56 16 15 N -0.46 -9.69 3.10 -168.72 -0.52 -10.22 16 16 C 0.08 1.48 5.51 -3.08 -0.02 1.46 16 17 C -0.12 -1.80 5.15 -88.08 -0.45 -2.26 16 18 C -0.14 -1.97 7.35 -25.55 -0.19 -2.15 16 19 C -0.11 -1.75 5.04 -89.14 -0.45 -2.20 16 20 C -0.13 -1.94 7.37 -24.27 -0.18 -2.11 16 21 C 0.07 1.34 5.48 -3.09 -0.02 1.33 16 22 H 0.30 8.12 6.71 -40.82 -0.27 7.85 16 23 H 0.11 2.77 6.51 -52.49 -0.34 2.43 16 24 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 25 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 26 H 0.08 1.74 6.99 -52.49 -0.37 1.38 16 27 H 0.03 0.52 7.08 -51.93 -0.37 0.15 16 28 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 31 H 0.06 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.64 7.52 -51.93 -0.39 1.25 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.03 0.57 6.82 -51.93 -0.35 0.21 16 LS Contribution 284.85 15.07 4.29 4.29 Total: -1.00 -26.61 284.85 -9.85 -36.46 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.09 Total: 7.52 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: -4.11 Total: -34.27 kcal Atomic # 7 Polarization: -30.72 SS G_CDS: 0.16 Total: -30.56 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.10 Total: 16.56 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -26.61 -9.85 -36.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260110546.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.679 kcal (2) G-P(sol) polarization free energy of solvation -26.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds