Wall clock time and date at job start Mon Mar 30 2020 05:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86805 * 119.99861 * 2 1 4 4 H 1.48489 * 109.47178 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.46891 * 120.00189 * 3 2 1 6 6 H 1.48502 * 109.46818 * 239.99547 * 3 2 1 7 7 C 1.39928 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99885 * 154.41667 * 7 2 1 9 9 C 1.41043 * 120.00272 * 334.42015 * 7 2 1 10 10 C 1.40730 * 120.30174 * 334.29894 * 9 7 2 11 11 C 1.36451 * 119.94531 * 179.73840 * 10 9 7 12 12 C 1.38902 * 120.59665 * 0.54012 * 11 10 9 13 13 C 1.38158 * 120.62970 * 359.71031 * 12 11 10 14 14 C 1.38757 * 120.02638 * 0.02899 * 13 12 11 15 15 N 1.38731 * 120.29596 * 179.97438 * 14 13 12 16 16 C 1.47349 * 110.99984 * 63.43728 * 15 14 13 17 17 C 1.53962 * 108.69156 * 189.97007 * 16 15 14 18 18 C 1.54133 * 111.83837 * 70.05305 * 17 16 15 19 19 C 1.54140 * 85.28544 * 282.13551 * 18 17 16 20 20 C 1.54351 * 86.25694 * 328.07410 * 19 18 17 21 21 C 1.47345 * 111.00010 * 300.02037 * 15 14 13 22 22 H 0.96995 * 120.00335 * 174.30021 * 1 2 3 23 23 H 1.07998 * 120.03029 * 359.96884 * 10 9 7 24 24 H 1.07998 * 119.70289 * 180.27499 * 11 10 9 25 25 H 1.07999 * 119.68881 * 179.73841 * 12 11 10 26 26 H 1.08001 * 119.99438 * 179.97438 * 13 12 11 27 27 H 1.09003 * 109.70088 * 308.65229 * 16 15 14 28 28 H 1.08995 * 109.70212 * 69.26484 * 16 15 14 29 29 H 1.09007 * 114.85873 * 204.48037 * 17 16 15 30 30 H 1.09007 * 113.90368 * 168.05136 * 18 17 16 31 31 H 1.08997 * 113.90704 * 36.22576 * 18 17 16 32 32 H 1.08998 * 115.67096 * 211.29393 * 19 18 17 33 33 H 1.09001 * 113.92537 * 145.92582 * 20 19 18 34 34 H 1.09001 * 113.92687 * 277.82799 * 20 19 18 35 35 H 1.09000 * 109.70425 * 290.72853 * 21 15 14 36 36 H 1.08998 * 109.70416 * 51.30422 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 1.2778 2.7464 -0.0006 5 1 3.0966 1.6964 1.2125 6 1 3.0966 1.6964 -1.2125 7 6 2.0084 -1.2118 0.0005 8 1 3.0090 -1.2579 -0.4033 9 6 1.4069 -2.3732 0.5284 10 6 0.3994 -2.2696 1.5056 11 6 -0.1813 -3.3978 2.0074 12 6 0.2202 -4.6538 1.5708 13 6 1.2106 -4.7838 0.6164 14 6 1.8150 -3.6537 0.0845 15 7 2.8105 -3.7779 -0.8738 16 6 2.2863 -4.4006 -2.1020 17 6 3.4697 -4.7420 -3.0259 18 6 4.3183 -5.9007 -2.4663 19 6 4.9124 -4.8396 -1.5192 20 6 4.6916 -3.8351 -2.6701 21 6 3.9540 -4.5459 -0.3509 22 1 -0.4850 -0.8358 -0.0834 23 1 0.0835 -1.2979 1.8552 24 1 -0.9572 -3.3136 2.7539 25 1 -0.2464 -5.5371 1.9811 26 1 1.5152 -5.7655 0.2846 27 1 1.7620 -5.3229 -1.8515 28 1 1.6033 -3.7127 -2.6002 29 1 3.2200 -4.8082 -4.0849 30 1 5.0355 -6.3073 -3.1794 31 1 3.7360 -6.6695 -1.9585 32 1 5.9493 -4.9985 -1.2232 33 1 4.4286 -2.8313 -2.3364 34 1 5.4805 -3.8441 -3.4223 35 1 4.4711 -3.9625 0.4109 36 1 3.6012 -5.4828 0.0803 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260110546.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:53 Heat of formation + Delta-G solvation = 40.114365 kcal Electronic energy + Delta-G solvation = -17760.302487 eV Core-core repulsion = 15209.099498 eV Total energy + Delta-G solvation = -2551.202990 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.85003 -39.49252 -36.02184 -35.32268 -31.26209 -30.67908 -30.12571 -26.94751 -26.42711 -25.09768 -23.16203 -22.83705 -21.70734 -19.75921 -18.67135 -17.90417 -16.78186 -16.40942 -15.85392 -15.54749 -15.43619 -15.25116 -14.68835 -14.23469 -14.09228 -14.04755 -13.71349 -13.09813 -12.97639 -12.70230 -12.57621 -12.36766 -11.97409 -11.88015 -11.84349 -11.46216 -11.23636 -11.07031 -10.85141 -10.81224 -9.52985 -9.42787 -9.08573 -8.98821 -6.33046 0.84249 0.92685 1.51653 1.66167 1.80504 2.35170 2.69355 3.14532 3.50971 3.64432 3.72315 3.77694 3.81434 4.22999 4.31312 4.40343 4.53178 4.56723 4.59025 4.67615 4.78539 4.83629 4.91554 4.96368 5.05859 5.06478 5.23313 5.26890 5.36774 5.43403 5.51425 5.64471 5.83694 5.92854 6.02870 6.22500 6.29501 6.41034 6.60559 6.99184 7.17722 8.07798 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.020170 B = 0.009656 C = 0.007158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.847154 B = 2899.162755 C = 3910.684795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.000 4.000 3 Si 1.113 2.887 4 H -0.273 1.273 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.511 4.511 8 H 0.075 0.925 9 C 0.087 3.913 10 C -0.236 4.236 11 C -0.090 4.090 12 C -0.250 4.250 13 C -0.110 4.110 14 C -0.047 4.047 15 N -0.476 5.476 16 C 0.077 3.923 17 C -0.118 4.118 18 C -0.122 4.122 19 C -0.114 4.114 20 C -0.123 4.123 21 C 0.071 3.929 22 H 0.282 0.718 23 H 0.089 0.911 24 H 0.112 0.888 25 H 0.115 0.885 26 H 0.104 0.896 27 H 0.025 0.975 28 H 0.049 0.951 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.054 0.946 34 H 0.101 0.899 35 H 0.055 0.945 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.748 -6.916 -4.402 11.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.215 4.215 3 Si 0.931 3.069 4 H -0.197 1.197 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.539 4.539 8 H 0.093 0.907 9 C 0.083 3.917 10 C -0.256 4.256 11 C -0.109 4.109 12 C -0.270 4.270 13 C -0.130 4.130 14 C -0.142 4.142 15 N -0.197 5.197 16 C -0.049 4.049 17 C -0.136 4.136 18 C -0.159 4.159 19 C -0.132 4.132 20 C -0.161 4.161 21 C -0.055 4.055 22 H 0.094 0.906 23 H 0.107 0.893 24 H 0.130 0.870 25 H 0.133 0.867 26 H 0.122 0.878 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.073 0.927 34 H 0.119 0.881 35 H 0.074 0.926 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 7.662 -4.804 -4.481 10.092 hybrid contribution -0.740 -2.426 0.496 2.585 sum 6.922 -7.230 -3.984 10.773 Atomic orbital electron populations 1.70590 1.08960 1.33025 1.31590 1.28398 0.95680 1.07457 0.89999 0.83050 0.74800 0.70062 0.78994 1.19743 1.18988 1.18395 1.20531 1.03310 0.94141 1.35944 0.90656 1.17858 0.90851 0.92836 0.90160 1.20881 1.04722 0.97339 1.02616 1.20651 0.98540 0.92892 0.98786 1.20519 1.04435 0.96458 1.05561 1.21280 0.97177 0.96997 0.97564 1.18666 1.01709 0.92489 1.01369 1.59435 1.06845 1.49587 1.03796 1.22118 0.96238 0.95851 0.90736 1.23202 0.93771 0.97972 0.98701 1.23259 0.99009 0.94849 0.98762 1.22827 0.98699 0.97910 0.93778 1.23367 0.97367 0.97750 0.97608 1.22246 0.91611 0.95035 0.96656 0.90638 0.89315 0.86990 0.86653 0.87800 0.95651 0.93208 0.88071 0.86992 0.92515 0.87904 0.92724 0.88085 0.92603 0.95194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.09 12.33 21.83 0.27 -44.82 16 2 C 0.00 0.02 4.93 85.24 0.42 0.44 16 3 Si 1.11 44.54 30.00 68.60 2.06 46.60 16 4 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 5 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 6 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 7 C -0.51 -28.00 8.61 23.37 0.20 -27.80 16 8 H 0.08 4.16 7.67 -2.91 -0.02 4.14 16 9 C 0.09 4.71 5.31 -21.17 -0.11 4.60 16 10 C -0.24 -12.48 7.90 22.46 0.18 -12.30 16 11 C -0.09 -4.23 9.97 22.01 0.22 -4.01 16 12 C -0.25 -11.01 10.03 22.41 0.22 -10.78 16 13 C -0.11 -4.94 8.34 22.37 0.19 -4.75 16 14 C -0.05 -2.29 4.76 38.99 0.19 -2.11 16 15 N -0.48 -20.38 3.10 -687.71 -2.13 -22.51 16 16 C 0.08 2.93 5.51 86.54 0.48 3.41 16 17 C -0.12 -3.37 5.15 -9.15 -0.05 -3.42 16 18 C -0.12 -2.89 7.35 31.36 0.23 -2.66 16 19 C -0.11 -3.15 5.04 -9.84 -0.05 -3.20 16 20 C -0.12 -3.54 7.37 32.19 0.24 -3.30 16 21 C 0.07 2.59 5.48 86.54 0.47 3.07 16 22 H 0.28 16.21 6.71 -92.71 -0.62 15.59 16 23 H 0.09 4.91 6.51 -2.91 -0.02 4.89 16 24 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 25 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 26 H 0.10 4.18 6.99 -2.91 -0.02 4.16 16 27 H 0.03 0.95 7.08 -2.39 -0.02 0.94 16 28 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 30 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.06 1.41 8.07 -2.39 -0.02 1.39 16 32 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.05 1.97 7.52 -2.39 -0.02 1.95 16 34 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.03 1.08 6.82 -2.39 -0.02 1.06 16 Total: -1.00 -59.76 284.85 4.22 -55.53 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: 1.20 Total: 28.03 kcal Atomic # 6 Polarization: -65.65 SS G_CDS: 2.83 Total: -62.83 kcal Atomic # 7 Polarization: -65.47 SS G_CDS: -1.86 Total: -67.33 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.06 Total: 46.60 kcal Total: -59.76 4.22 -55.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260110546.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.647 kcal (2) G-P(sol) polarization free energy of solvation -59.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds