Wall clock time and date at job start Mon Mar 30 2020 06:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36475 * 120.09935 * 2 1 4 4 C 1.38897 * 120.59576 * 179.88559 * 3 2 1 5 5 C 1.37999 * 120.69672 * 359.63856 * 4 3 2 6 6 C 1.38888 * 119.89337 * 359.97316 * 5 4 3 7 7 C 1.40454 * 120.09979 * 179.28139 * 2 1 3 8 8 C 1.40934 * 133.09475 * 359.97438 * 7 2 1 9 9 C 1.39122 * 107.49832 * 180.02562 * 8 7 2 10 10 C 1.39922 * 125.69639 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00037 * 179.97438 * 10 9 8 12 12 C 1.40190 * 119.99782 * 359.97438 * 10 9 8 13 13 N 1.30749 * 119.99626 * 0.02562 * 12 10 9 14 14 Si 1.86792 * 120.00058 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47386 * 90.00333 * 14 12 10 16 16 H 1.48507 * 109.47363 * 210.00561 * 14 12 10 17 17 H 1.48506 * 109.47302 * 330.00123 * 14 12 10 18 18 N 1.38051 * 132.79708 * 180.02562 * 6 5 4 19 19 C 1.46497 * 125.60748 * 359.97438 * 18 6 5 20 20 C 1.52997 * 109.47188 * 239.71960 * 19 18 6 21 21 C 1.52992 * 109.47081 * 119.71504 * 19 18 6 22 22 H 1.09001 * 109.46699 * 270.72108 * 1 2 3 23 23 H 1.08993 * 109.47212 * 30.72428 * 1 2 3 24 24 H 1.08999 * 109.46993 * 150.72664 * 1 2 3 25 25 H 1.08003 * 119.70303 * 359.47937 * 3 2 1 26 26 H 1.07998 * 119.64925 * 179.60859 * 4 3 2 27 27 H 1.08004 * 120.05010 * 179.97438 * 5 4 3 28 28 H 1.08000 * 126.25268 * 0.03300 * 8 7 2 29 29 H 0.97003 * 120.00119 * 179.97438 * 13 12 10 30 30 H 1.09002 * 109.46725 * 359.71796 * 19 18 6 31 31 H 1.09002 * 109.47153 * 299.99573 * 20 19 18 32 32 H 1.09001 * 109.46832 * 179.97438 * 20 19 18 33 33 H 1.09004 * 109.47261 * 59.99745 * 20 19 18 34 34 H 1.09001 * 109.47066 * 180.02562 * 21 19 18 35 35 H 1.08996 * 109.47747 * 300.00111 * 21 19 18 36 36 H 1.09002 * 109.47103 * 60.00523 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1914 1.1807 0.0000 4 6 3.5803 1.1928 0.0024 5 6 4.2951 0.0123 0.0123 6 6 3.6235 -1.2034 0.0205 7 6 2.2114 -1.2150 0.0152 8 6 1.8039 -2.5641 0.0326 9 6 2.9532 -3.3481 0.0428 10 6 2.9872 -4.7468 0.0603 11 1 3.9353 -5.2639 0.0666 12 6 1.7904 -5.4769 0.0696 13 7 0.6426 -4.8508 0.0615 14 14 1.8358 -7.3442 0.0923 15 1 1.8482 -7.8220 1.4983 16 1 0.6354 -7.8770 -0.6010 17 1 3.0597 -7.8181 -0.6025 18 7 4.0567 -2.5141 0.0315 19 6 5.4553 -2.9502 0.0368 20 6 5.7273 -3.8062 -1.2017 21 6 5.7276 -3.7747 1.2965 22 1 -0.3633 0.0129 1.0276 23 1 -0.3633 0.8834 -0.5250 24 1 -0.3633 -0.8964 -0.5025 25 1 1.6482 2.1142 -0.0085 26 1 4.1065 2.1359 -0.0041 27 1 5.3749 0.0339 0.0136 28 1 0.7855 -2.9236 0.0371 29 1 -0.1855 -5.3560 0.0676 30 1 6.1080 -2.0773 0.0257 31 1 5.0746 -4.6791 -1.1907 32 1 6.7681 -4.1303 -1.1980 33 1 5.5333 -3.2188 -2.0992 34 1 6.7683 -4.0987 1.3007 35 1 5.5338 -3.1649 2.1789 36 1 5.0749 -4.6476 1.3076 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260127197.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:57 Heat of formation + Delta-G solvation = 35.119510 kcal Electronic energy + Delta-G solvation = -17601.140657 eV Core-core repulsion = 15049.721075 eV Total energy + Delta-G solvation = -2551.419583 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.92066 -36.57141 -34.17565 -33.18800 -31.67039 -28.63983 -27.88701 -26.70009 -26.15137 -24.49590 -21.52150 -20.70855 -20.09887 -17.99922 -16.91507 -15.77184 -15.57649 -14.49279 -14.02668 -13.79151 -13.59899 -13.36589 -12.70393 -12.55477 -12.09007 -11.97840 -11.85917 -11.66343 -11.58976 -11.35244 -11.32834 -11.00085 -10.80729 -10.79508 -10.30380 -10.27773 -10.06856 -9.56137 -9.44927 -9.29174 -8.13920 -7.02374 -6.68912 -6.26234 -4.33416 2.36282 2.83897 2.99948 3.00165 3.03078 3.78285 4.11876 4.14994 5.03797 5.30882 5.37839 5.64545 5.67483 5.85057 5.93405 6.00981 6.02497 6.20649 6.22114 6.30920 6.33436 6.47502 6.50547 6.60142 6.71191 6.75323 6.89726 6.99856 7.06707 7.09354 7.44141 7.65543 7.71587 7.82908 7.95991 8.08247 8.38873 8.71210 8.79936 9.02492 9.21337 10.14618 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.021765 B = 0.009548 C = 0.006952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.176932 B = 2931.721907 C = 4026.824085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.106 4.106 3 C -0.141 4.141 4 C -0.178 4.178 5 C -0.123 4.123 6 C 0.042 3.958 7 C -0.041 4.041 8 C -0.324 4.324 9 C 0.268 3.732 10 C -0.441 4.441 11 H 0.083 0.917 12 C 0.071 3.929 13 N -0.778 5.778 14 Si 0.921 3.079 15 H -0.269 1.269 16 H -0.275 1.275 17 H -0.263 1.263 18 N -0.507 5.507 19 C 0.151 3.849 20 C -0.168 4.168 21 C -0.168 4.168 22 H 0.052 0.948 23 H 0.046 0.954 24 H 0.062 0.938 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.165 0.835 29 H 0.279 0.721 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.338 0.725 -0.011 4.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.107 4.107 3 C -0.160 4.160 4 C -0.198 4.198 5 C -0.144 4.144 6 C -0.061 4.061 7 C -0.046 4.046 8 C -0.346 4.346 9 C 0.163 3.837 10 C -0.474 4.474 11 H 0.101 0.899 12 C -0.148 4.148 13 N -0.403 5.403 14 Si 0.745 3.255 15 H -0.194 1.194 16 H -0.200 1.200 17 H -0.187 1.187 18 N -0.198 5.198 19 C 0.048 3.952 20 C -0.225 4.225 21 C -0.226 4.226 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.181 0.819 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.375 0.563 -0.019 4.411 hybrid contribution 0.193 -0.681 0.030 0.709 sum 4.567 -0.118 0.012 4.569 Atomic orbital electron populations 1.20503 0.92899 1.01104 1.00638 1.18948 0.94477 0.91776 1.05503 1.20069 0.93823 0.96063 1.06072 1.20164 0.93786 0.95589 1.10222 1.19676 0.97116 0.90495 1.07121 1.18209 0.93922 0.84544 1.09428 1.18354 0.91316 0.94214 1.00753 1.21763 0.99369 0.87966 1.25538 1.18092 0.83193 0.90172 0.92236 1.18836 0.93839 0.89144 1.45557 0.89881 1.25792 0.94674 1.01273 0.93068 1.69718 0.98690 1.37274 1.34629 0.86100 0.78963 0.81196 0.79242 1.19386 1.20003 1.18672 1.44400 1.04299 1.03757 1.67334 1.20791 0.81956 0.96977 0.95501 1.22259 1.01201 1.01730 0.97356 1.22261 1.01202 1.01885 0.97219 0.92914 0.93539 0.91899 0.88592 0.88377 0.89021 0.81852 0.90926 0.90873 0.90063 0.92548 0.92796 0.92545 0.92798 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.86 9.92 36.01 0.36 -1.50 16 2 C -0.11 -2.42 5.90 -104.42 -0.62 -3.04 16 3 C -0.14 -2.93 9.61 -39.97 -0.38 -3.32 16 4 C -0.18 -3.64 10.02 -39.43 -0.40 -4.04 16 5 C -0.12 -2.66 9.81 -39.43 -0.39 -3.05 16 6 C 0.04 1.02 6.81 -83.69 -0.57 0.45 16 7 C -0.04 -1.06 5.97 -106.91 -0.64 -1.69 16 8 C -0.32 -8.76 9.37 -38.23 -0.36 -9.11 16 9 C 0.27 6.92 6.22 -83.97 -0.52 6.40 16 10 C -0.44 -10.82 7.36 -38.22 -0.28 -11.10 16 11 H 0.08 1.88 4.36 -52.49 -0.23 1.66 16 12 C 0.07 1.69 5.50 -17.28 -0.10 1.60 16 13 N -0.78 -19.35 10.18 55.56 0.57 -18.78 16 14 Si 0.92 17.77 29.56 -169.99 -5.03 12.74 16 15 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 16 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 17 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 18 N -0.51 -11.91 2.70 -104.48 -0.28 -12.19 16 19 C 0.15 2.86 3.41 -67.94 -0.23 2.63 16 20 C -0.17 -2.90 9.18 37.16 0.34 -2.56 16 21 C -0.17 -2.90 9.18 37.15 0.34 -2.56 16 22 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 23 H 0.05 0.78 8.09 -51.93 -0.42 0.36 16 24 H 0.06 1.28 7.81 -51.93 -0.41 0.88 16 25 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 26 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 27 H 0.09 1.76 7.54 -52.48 -0.40 1.36 16 28 H 0.16 4.58 5.55 -52.49 -0.29 4.29 16 29 H 0.28 6.31 8.29 -40.82 -0.34 5.97 16 30 H 0.07 1.29 7.34 -51.93 -0.38 0.91 16 31 H 0.08 1.54 5.46 -51.93 -0.28 1.25 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.53 5.46 -51.93 -0.28 1.24 16 LS Contribution 288.75 15.07 4.35 4.35 Total: -1.00 -27.43 288.75 -8.61 -36.04 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -4.78 Total: 8.72 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: -3.44 Total: -30.89 kcal Atomic # 7 Polarization: -31.25 SS G_CDS: 0.28 Total: -30.97 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.43 -8.61 -36.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260127197.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.158 kcal (2) G-P(sol) polarization free energy of solvation -27.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds