Wall clock time and date at job start Mon Mar 30 2020 06:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36475 * 120.09935 * 2 1 4 4 C 1.38897 * 120.59576 * 179.88559 * 3 2 1 5 5 C 1.37999 * 120.69672 * 359.63856 * 4 3 2 6 6 C 1.38888 * 119.89337 * 359.97316 * 5 4 3 7 7 C 1.40454 * 120.09979 * 179.28139 * 2 1 3 8 8 C 1.40934 * 133.09475 * 359.97438 * 7 2 1 9 9 C 1.39122 * 107.49832 * 180.02562 * 8 7 2 10 10 C 1.39922 * 125.69639 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00037 * 179.97438 * 10 9 8 12 12 C 1.40190 * 119.99782 * 359.97438 * 10 9 8 13 13 N 1.30749 * 119.99626 * 0.02562 * 12 10 9 14 14 Si 1.86792 * 120.00058 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47386 * 90.00333 * 14 12 10 16 16 H 1.48507 * 109.47363 * 210.00561 * 14 12 10 17 17 H 1.48506 * 109.47302 * 330.00123 * 14 12 10 18 18 N 1.38051 * 132.79708 * 180.02562 * 6 5 4 19 19 C 1.46497 * 125.60748 * 359.97438 * 18 6 5 20 20 C 1.52997 * 109.47188 * 239.71960 * 19 18 6 21 21 C 1.52992 * 109.47081 * 119.71504 * 19 18 6 22 22 H 1.09001 * 109.46699 * 270.72108 * 1 2 3 23 23 H 1.08993 * 109.47212 * 30.72428 * 1 2 3 24 24 H 1.08999 * 109.46993 * 150.72664 * 1 2 3 25 25 H 1.08003 * 119.70303 * 359.47937 * 3 2 1 26 26 H 1.07998 * 119.64925 * 179.60859 * 4 3 2 27 27 H 1.08004 * 120.05010 * 179.97438 * 5 4 3 28 28 H 1.08000 * 126.25268 * 0.03300 * 8 7 2 29 29 H 0.97003 * 120.00119 * 179.97438 * 13 12 10 30 30 H 1.09002 * 109.46725 * 359.71796 * 19 18 6 31 31 H 1.09002 * 109.47153 * 299.99573 * 20 19 18 32 32 H 1.09001 * 109.46832 * 179.97438 * 20 19 18 33 33 H 1.09004 * 109.47261 * 59.99745 * 20 19 18 34 34 H 1.09001 * 109.47066 * 180.02562 * 21 19 18 35 35 H 1.08996 * 109.47747 * 300.00111 * 21 19 18 36 36 H 1.09002 * 109.47103 * 60.00523 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1914 1.1807 0.0000 4 6 3.5803 1.1928 0.0024 5 6 4.2951 0.0123 0.0123 6 6 3.6235 -1.2034 0.0205 7 6 2.2114 -1.2150 0.0152 8 6 1.8039 -2.5641 0.0326 9 6 2.9532 -3.3481 0.0428 10 6 2.9872 -4.7468 0.0603 11 1 3.9353 -5.2639 0.0666 12 6 1.7904 -5.4769 0.0696 13 7 0.6426 -4.8508 0.0615 14 14 1.8358 -7.3442 0.0923 15 1 1.8482 -7.8220 1.4983 16 1 0.6354 -7.8770 -0.6010 17 1 3.0597 -7.8181 -0.6025 18 7 4.0567 -2.5141 0.0315 19 6 5.4553 -2.9502 0.0368 20 6 5.7273 -3.8062 -1.2017 21 6 5.7276 -3.7747 1.2965 22 1 -0.3633 0.0129 1.0276 23 1 -0.3633 0.8834 -0.5250 24 1 -0.3633 -0.8964 -0.5025 25 1 1.6482 2.1142 -0.0085 26 1 4.1065 2.1359 -0.0041 27 1 5.3749 0.0339 0.0136 28 1 0.7855 -2.9236 0.0371 29 1 -0.1855 -5.3560 0.0676 30 1 6.1080 -2.0773 0.0257 31 1 5.0746 -4.6791 -1.1907 32 1 6.7681 -4.1303 -1.1980 33 1 5.5333 -3.2188 -2.0992 34 1 6.7683 -4.0987 1.3007 35 1 5.5338 -3.1649 2.1789 36 1 5.0749 -4.6476 1.3076 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260127197.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:57 Heat of formation + Delta-G solvation = 22.452707 kcal Electronic energy + Delta-G solvation = -17601.689931 eV Core-core repulsion = 15049.721075 eV Total energy + Delta-G solvation = -2551.968857 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.65155 -38.21994 -35.86956 -34.85298 -33.33698 -30.43675 -29.58100 -28.07391 -27.84598 -26.25436 -23.10404 -22.47270 -21.80553 -19.71172 -18.69055 -17.41474 -17.29139 -16.12078 -15.66312 -15.43122 -15.11753 -14.96153 -14.26235 -14.21601 -13.71239 -13.57409 -13.53103 -13.18526 -12.97666 -12.96677 -12.90413 -12.71642 -12.31966 -12.27496 -11.91986 -11.87296 -11.70477 -11.28658 -11.14137 -11.00839 -9.90995 -8.81992 -8.46634 -8.03630 -6.21980 0.63669 1.14578 1.40205 1.44104 1.54227 2.16289 2.31655 2.51837 3.29426 3.53566 3.85969 4.13976 4.21139 4.30346 4.37626 4.51333 4.63445 4.75109 4.75335 4.84675 4.88817 4.92092 4.93440 5.02381 5.09738 5.18894 5.34357 5.35642 5.37040 5.48829 5.69673 5.93008 5.94132 6.09784 6.16778 6.30513 6.59449 6.85435 6.93554 7.21385 7.38755 8.39716 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.021765 B = 0.009548 C = 0.006952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.176932 B = 2931.721907 C = 4026.824085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.125 4.125 3 C -0.144 4.144 4 C -0.166 4.166 5 C -0.132 4.132 6 C 0.019 3.981 7 C -0.081 4.081 8 C -0.368 4.368 9 C 0.248 3.752 10 C -0.460 4.460 11 H 0.097 0.903 12 C 0.025 3.975 13 N -0.814 5.814 14 Si 0.994 3.006 15 H -0.263 1.263 16 H -0.272 1.272 17 H -0.252 1.252 18 N -0.510 5.510 19 C 0.139 3.861 20 C -0.159 4.159 21 C -0.160 4.160 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.040 0.960 25 H 0.130 0.870 26 H 0.138 0.862 27 H 0.118 0.882 28 H 0.142 0.858 29 H 0.283 0.717 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.041 0.959 34 H 0.096 0.904 35 H 0.041 0.959 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.296 1.411 -0.015 6.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C -0.163 4.163 4 C -0.185 4.185 5 C -0.154 4.154 6 C -0.084 4.084 7 C -0.086 4.086 8 C -0.391 4.391 9 C 0.142 3.858 10 C -0.492 4.492 11 H 0.115 0.885 12 C -0.191 4.191 13 N -0.440 5.440 14 Si 0.814 3.186 15 H -0.188 1.188 16 H -0.196 1.196 17 H -0.175 1.175 18 N -0.200 5.200 19 C 0.037 3.963 20 C -0.217 4.217 21 C -0.217 4.217 22 H 0.077 0.923 23 H 0.096 0.904 24 H 0.059 0.941 25 H 0.148 0.852 26 H 0.156 0.844 27 H 0.136 0.864 28 H 0.159 0.841 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.060 0.940 34 H 0.115 0.885 35 H 0.060 0.940 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.359 1.270 -0.023 6.484 hybrid contribution -0.398 -0.699 0.031 0.805 sum 5.961 0.570 0.009 5.988 Atomic orbital electron populations 1.20482 0.91394 1.01504 1.01218 1.19416 0.96058 0.91808 1.05330 1.20492 0.94487 0.96540 1.04798 1.20713 0.93890 0.96759 1.07139 1.20054 0.98631 0.89831 1.06835 1.18669 0.93919 0.85865 1.09933 1.18712 0.92805 0.94556 1.02480 1.21720 0.99139 0.89623 1.28625 1.18347 0.83929 0.90983 0.92561 1.19189 0.94878 0.89037 1.46131 0.88528 1.26827 0.93992 1.06149 0.92091 1.69860 0.99494 1.39207 1.35436 0.85012 0.79292 0.74887 0.79402 1.18824 1.19649 1.17497 1.44634 1.05457 1.03222 1.66735 1.21196 0.79928 0.98193 0.96960 1.22189 1.03185 1.00318 0.96011 1.22192 1.03205 1.00499 0.95842 0.92264 0.90395 0.94055 0.85176 0.84425 0.86413 0.84108 0.90549 0.89147 0.92094 0.88498 0.93968 0.88490 0.93971 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.53 9.92 71.24 0.71 -2.82 16 2 C -0.13 -5.73 5.90 -19.74 -0.12 -5.85 16 3 C -0.14 -5.65 9.61 22.02 0.21 -5.44 16 4 C -0.17 -6.24 10.02 22.37 0.22 -6.01 16 5 C -0.13 -5.48 9.81 22.37 0.22 -5.26 16 6 C 0.02 0.95 6.81 39.05 0.27 1.21 16 7 C -0.08 -4.27 5.97 -21.35 -0.13 -4.40 16 8 C -0.37 -21.20 9.37 23.14 0.22 -20.99 16 9 C 0.25 13.40 6.22 38.74 0.24 13.64 16 10 C -0.46 -23.34 7.36 23.15 0.17 -23.17 16 11 H 0.10 4.46 4.36 -2.91 -0.01 4.45 16 12 C 0.02 1.22 5.50 85.33 0.47 1.69 16 13 N -0.81 -42.76 10.18 21.87 0.22 -42.54 16 14 Si 0.99 36.87 29.56 68.60 2.03 38.90 16 15 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 16 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 17 H -0.25 -8.79 7.11 99.48 0.71 -8.09 16 18 N -0.51 -24.36 2.70 -484.46 -1.31 -25.66 16 19 C 0.14 5.11 3.41 44.99 0.15 5.27 16 20 C -0.16 -5.30 9.18 71.98 0.66 -4.64 16 21 C -0.16 -5.30 9.18 71.98 0.66 -4.64 16 22 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 23 H 0.08 2.52 8.09 -2.39 -0.02 2.50 16 24 H 0.04 1.77 7.81 -2.39 -0.02 1.75 16 25 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 26 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 27 H 0.12 4.16 7.54 -2.91 -0.02 4.14 16 28 H 0.14 8.58 5.55 -2.91 -0.02 8.57 16 29 H 0.28 13.52 8.29 -92.71 -0.77 12.75 16 30 H 0.09 2.97 7.34 -2.39 -0.02 2.96 16 31 H 0.06 2.28 5.46 -2.39 -0.01 2.26 16 32 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 2.28 5.46 -2.39 -0.01 2.27 16 Total: -1.00 -63.00 288.75 5.97 -57.02 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: 1.08 Total: 33.68 kcal Atomic # 6 Polarization: -65.36 SS G_CDS: 3.96 Total: -61.40 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -1.08 Total: -68.20 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.03 Total: 38.90 kcal Total: -63.00 5.97 -57.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260127197.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.477 kcal (2) G-P(sol) polarization free energy of solvation -62.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds