Wall clock time and date at job start Mon Mar 30 2020 05:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99914 * 2 1 4 4 H 1.48498 * 109.47237 * 269.99505 * 3 2 1 5 5 H 1.48500 * 109.47175 * 29.99921 * 3 2 1 6 6 H 1.48502 * 109.47337 * 149.99740 * 3 2 1 7 7 C 1.37881 * 120.00409 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99179 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00126 * 180.02562 * 7 2 1 10 10 C 1.50704 * 109.46791 * 179.97438 * 9 7 2 11 11 C 1.38127 * 120.03993 * 265.02312 * 10 9 7 12 12 C 1.38260 * 120.07767 * 180.02562 * 11 10 9 13 13 C 1.38310 * 120.14865 * 359.95534 * 12 11 10 14 14 C 1.38091 * 120.07396 * 0.04625 * 13 12 11 15 15 C 1.38885 * 120.03505 * 85.00116 * 10 9 7 16 16 N 1.39677 * 120.07727 * 0.02562 * 15 10 9 17 17 C 1.48559 * 110.99601 * 235.44068 * 16 15 10 18 18 C 1.54380 * 104.59137 * 200.95801 * 17 16 15 19 19 H 1.09007 * 118.15469 * 244.14911 * 18 17 16 20 20 C 1.57005 * 118.21681 * 86.26643 * 18 17 16 21 21 C 1.53003 * 59.66601 * 268.82159 * 20 18 17 22 22 H 1.08995 * 119.52505 * 247.59340 * 21 20 18 23 23 C 1.48556 * 111.00284 * 120.01916 * 16 15 10 24 24 H 0.97003 * 120.00000 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47162 * 60.00302 * 9 7 2 26 26 H 1.08992 * 109.47098 * 299.99689 * 9 7 2 27 27 H 1.08002 * 119.95833 * 359.97438 * 11 10 9 28 28 H 1.07998 * 119.92904 * 180.02562 * 12 11 10 29 29 H 1.08001 * 119.96689 * 180.02562 * 13 12 11 30 30 H 1.08003 * 120.03523 * 180.25608 * 14 13 12 31 31 H 1.08996 * 110.41483 * 319.73373 * 17 16 15 32 32 H 1.09004 * 110.41368 * 82.17963 * 17 16 15 33 33 H 1.08998 * 116.97822 * 161.28823 * 20 18 17 34 34 H 1.09008 * 118.40511 * 15.71484 * 20 18 17 35 35 H 1.08997 * 110.41106 * 277.82192 * 23 16 15 36 36 H 1.09006 * 110.40915 * 40.14593 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0139 -2.6148 0.0023 11 6 4.3417 -3.2314 1.1940 12 6 4.8032 -4.5347 1.1959 13 6 4.9373 -5.2259 0.0055 14 6 4.6114 -4.6155 -1.1896 15 6 4.1473 -3.3059 -1.1950 16 7 3.8168 -2.6855 -2.4020 17 6 2.8130 -3.4827 -3.1529 18 6 2.9523 -3.0061 -4.6146 19 1 2.1027 -2.5008 -5.0741 20 6 4.0318 -3.6975 -5.5212 21 6 4.3851 -2.4439 -4.7182 22 1 4.6002 -1.5130 -5.2426 23 6 4.9910 -2.6283 -3.3102 24 1 -0.4850 0.8401 -0.0004 25 1 3.8746 -0.6800 0.8911 26 1 3.8752 -0.6804 -0.8888 27 1 4.2383 -2.6944 2.1254 28 1 5.0584 -5.0146 2.1292 29 1 5.2976 -6.2440 0.0104 30 1 4.7124 -5.1572 -2.1185 31 1 3.0382 -4.5465 -3.0768 32 1 1.8092 -3.2782 -2.7803 33 1 3.9161 -3.5872 -6.5994 34 1 4.4589 -4.6438 -5.1890 35 1 5.6271 -1.7805 -3.0561 36 1 5.5582 -3.5576 -3.2572 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260152584.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:07 Heat of formation + Delta-G solvation = 71.121564 kcal Electronic energy + Delta-G solvation = -17433.697531 eV Core-core repulsion = 14883.839114 eV Total energy + Delta-G solvation = -2549.858417 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.17919 -38.05962 -33.93438 -33.28449 -31.34710 -29.06908 -28.14206 -27.37375 -24.35573 -22.87454 -21.56962 -20.19687 -19.91065 -19.86417 -16.64256 -16.62651 -15.94075 -14.98067 -14.74223 -14.08759 -13.85689 -13.77658 -13.03798 -12.85005 -12.55508 -12.41850 -12.09689 -11.70143 -11.59504 -11.33095 -11.21558 -11.10857 -10.75506 -10.28367 -10.05491 -9.95812 -9.91846 -9.72480 -9.26681 -8.44259 -8.24076 -7.98386 -7.76239 -5.94444 -3.89739 1.80591 2.02850 3.38434 3.44598 3.47985 3.67300 4.30412 4.33045 4.53664 4.66402 4.89516 5.11246 5.31253 5.32512 5.37703 5.42226 5.48610 5.56370 5.73219 5.76802 5.82369 5.97271 6.07259 6.16294 6.25271 6.27339 6.31558 6.46475 6.64596 6.81569 6.95145 7.08492 7.12747 7.18080 7.42880 7.64732 7.84455 8.02828 8.63367 9.09963 9.67336 11.19064 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.016849 B = 0.009947 C = 0.007142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.466175 B = 2814.379614 C = 3919.478831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.489 4.489 8 H 0.069 0.931 9 C 0.022 3.978 10 C -0.003 4.003 11 C -0.121 4.121 12 C -0.123 4.123 13 C -0.139 4.139 14 C -0.152 4.152 15 C 0.072 3.928 16 N -0.451 5.451 17 C 0.070 3.930 18 C -0.159 4.159 19 H 0.120 0.880 20 C -0.158 4.158 21 C -0.161 4.161 22 H 0.113 0.887 23 C 0.062 3.938 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.036 0.964 27 H 0.122 0.878 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.043 0.957 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.399 -8.016 -6.511 14.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.192 1.192 7 C -0.527 4.527 8 H 0.087 0.913 9 C -0.015 4.015 10 C -0.004 4.004 11 C -0.140 4.140 12 C -0.141 4.141 13 C -0.158 4.158 14 C -0.173 4.173 15 C -0.022 4.022 16 N -0.172 5.172 17 C -0.056 4.056 18 C -0.178 4.178 19 H 0.138 0.862 20 C -0.195 4.195 21 C -0.179 4.179 22 H 0.131 0.869 23 C -0.064 4.064 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.055 0.945 27 H 0.140 0.860 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.061 0.939 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.038 -7.337 -6.358 13.965 hybrid contribution 0.562 0.094 -0.220 0.611 sum 10.600 -7.243 -6.578 14.426 Atomic orbital electron populations 1.69901 1.06175 1.26598 1.51922 1.24920 0.94637 0.98755 0.94906 0.86823 0.80272 0.83943 0.78493 1.20272 1.21666 1.19168 1.20764 0.88052 0.94217 1.49668 0.91315 1.18689 0.97485 0.88136 0.97158 1.20231 0.91534 0.98205 0.90451 1.21075 1.00025 0.94869 0.98026 1.21054 1.00612 0.94997 0.97436 1.20744 1.03195 0.99305 0.92564 1.21472 1.02038 0.95851 0.97890 1.18762 1.00517 0.91365 0.91532 1.63165 1.06919 1.46269 1.00807 1.22669 0.98354 0.94581 0.89963 1.24084 0.93045 1.04781 0.95902 0.86241 1.23680 1.02228 0.96241 0.97362 1.23382 0.99091 0.98257 0.97208 0.86869 1.22742 0.92992 1.00975 0.89683 0.92914 0.96296 0.94537 0.86036 0.86862 0.87156 0.87286 0.93887 0.88595 0.88303 0.89300 0.89859 0.93798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.14 13.96 55.43 0.77 -27.37 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 22.09 27.47 -169.99 -4.67 17.43 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 7 C -0.49 -14.02 9.65 -34.44 -0.33 -14.35 16 8 H 0.07 2.17 7.98 -52.49 -0.42 1.75 16 9 C 0.02 0.55 3.87 -29.04 -0.11 0.44 16 10 C 0.00 -0.07 5.09 -104.42 -0.53 -0.61 16 11 C -0.12 -2.32 9.67 -39.61 -0.38 -2.70 16 12 C -0.12 -1.99 10.04 -39.55 -0.40 -2.39 16 13 C -0.14 -2.17 10.04 -39.61 -0.40 -2.57 16 14 C -0.15 -2.56 8.05 -39.38 -0.32 -2.88 16 15 C 0.07 1.42 4.88 -83.79 -0.41 1.01 16 16 N -0.45 -8.63 4.43 -166.71 -0.74 -9.37 16 17 C 0.07 1.22 6.17 -2.18 -0.01 1.21 16 18 C -0.16 -2.33 7.29 -87.07 -0.63 -2.97 16 19 H 0.12 1.70 8.14 -51.93 -0.42 1.28 16 20 C -0.16 -1.84 10.30 -24.56 -0.25 -2.09 16 21 C -0.16 -2.22 6.98 -89.24 -0.62 -2.84 16 22 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 23 C 0.06 0.98 6.16 -2.18 -0.01 0.96 16 24 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.02 0.46 7.11 -51.93 -0.37 0.09 16 26 H 0.04 0.92 7.05 -51.93 -0.37 0.55 16 27 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 28 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.11 1.62 6.74 -52.48 -0.35 1.27 16 31 H 0.04 0.69 6.48 -51.93 -0.34 0.35 16 32 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 33 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.04 0.64 6.78 -51.93 -0.35 0.29 16 LS Contribution 293.75 15.07 4.43 4.43 Total: -1.00 -31.13 293.75 -9.89 -41.02 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -5.17 Total: 1.74 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -4.51 Total: -27.87 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.03 Total: -36.74 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.13 -9.89 -41.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260152584.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.145 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds