Wall clock time and date at job start Mon Mar 30 2020 05:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99914 * 2 1 4 4 H 1.48498 * 109.47237 * 269.99505 * 3 2 1 5 5 H 1.48500 * 109.47175 * 29.99921 * 3 2 1 6 6 H 1.48502 * 109.47337 * 149.99740 * 3 2 1 7 7 C 1.37881 * 120.00409 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99179 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00126 * 180.02562 * 7 2 1 10 10 C 1.50704 * 109.46791 * 179.97438 * 9 7 2 11 11 C 1.38127 * 120.03993 * 265.02312 * 10 9 7 12 12 C 1.38260 * 120.07767 * 180.02562 * 11 10 9 13 13 C 1.38310 * 120.14865 * 359.95534 * 12 11 10 14 14 C 1.38091 * 120.07396 * 0.04625 * 13 12 11 15 15 C 1.38885 * 120.03505 * 85.00116 * 10 9 7 16 16 N 1.39677 * 120.07727 * 0.02562 * 15 10 9 17 17 C 1.48559 * 110.99601 * 235.44068 * 16 15 10 18 18 C 1.54380 * 104.59137 * 200.95801 * 17 16 15 19 19 H 1.09007 * 118.15469 * 244.14911 * 18 17 16 20 20 C 1.57005 * 118.21681 * 86.26643 * 18 17 16 21 21 C 1.53003 * 59.66601 * 268.82159 * 20 18 17 22 22 H 1.08995 * 119.52505 * 247.59340 * 21 20 18 23 23 C 1.48556 * 111.00284 * 120.01916 * 16 15 10 24 24 H 0.97003 * 120.00000 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47162 * 60.00302 * 9 7 2 26 26 H 1.08992 * 109.47098 * 299.99689 * 9 7 2 27 27 H 1.08002 * 119.95833 * 359.97438 * 11 10 9 28 28 H 1.07998 * 119.92904 * 180.02562 * 12 11 10 29 29 H 1.08001 * 119.96689 * 180.02562 * 13 12 11 30 30 H 1.08003 * 120.03523 * 180.25608 * 14 13 12 31 31 H 1.08996 * 110.41483 * 319.73373 * 17 16 15 32 32 H 1.09004 * 110.41368 * 82.17963 * 17 16 15 33 33 H 1.08998 * 116.97822 * 161.28823 * 20 18 17 34 34 H 1.09008 * 118.40511 * 15.71484 * 20 18 17 35 35 H 1.08997 * 110.41106 * 277.82192 * 23 16 15 36 36 H 1.09006 * 110.40915 * 40.14593 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0139 -2.6148 0.0023 11 6 4.3417 -3.2314 1.1940 12 6 4.8032 -4.5347 1.1959 13 6 4.9373 -5.2259 0.0055 14 6 4.6114 -4.6155 -1.1896 15 6 4.1473 -3.3059 -1.1950 16 7 3.8168 -2.6855 -2.4020 17 6 2.8130 -3.4827 -3.1529 18 6 2.9523 -3.0061 -4.6146 19 1 2.1027 -2.5008 -5.0741 20 6 4.0318 -3.6975 -5.5212 21 6 4.3851 -2.4439 -4.7182 22 1 4.6002 -1.5130 -5.2426 23 6 4.9910 -2.6283 -3.3102 24 1 -0.4850 0.8401 -0.0004 25 1 3.8746 -0.6800 0.8911 26 1 3.8752 -0.6804 -0.8888 27 1 4.2383 -2.6944 2.1254 28 1 5.0584 -5.0146 2.1292 29 1 5.2976 -6.2440 0.0104 30 1 4.7124 -5.1572 -2.1185 31 1 3.0382 -4.5465 -3.0768 32 1 1.8092 -3.2782 -2.7803 33 1 3.9161 -3.5872 -6.5994 34 1 4.4589 -4.6438 -5.1890 35 1 5.6271 -1.7805 -3.0561 36 1 5.5582 -3.5576 -3.2572 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260152584.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:06 Heat of formation + Delta-G solvation = 53.195649 kcal Electronic energy + Delta-G solvation = -17434.474857 eV Core-core repulsion = 14883.839114 eV Total energy + Delta-G solvation = -2550.635743 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.48218 -39.35389 -35.37296 -35.11803 -33.23080 -30.43946 -29.40442 -29.15255 -25.64203 -24.71462 -22.88661 -21.49962 -21.38191 -21.03330 -18.89747 -17.95607 -17.18842 -16.47403 -16.23718 -15.87531 -15.17121 -15.13567 -14.75543 -14.14462 -14.05943 -13.81978 -13.69540 -13.48667 -13.11077 -12.82467 -12.53064 -12.39041 -12.32356 -11.95640 -11.81050 -11.73663 -11.49882 -11.06157 -10.83916 -10.72098 -9.61863 -9.35312 -9.22816 -8.23698 -6.23822 0.44519 0.61722 1.35365 1.36964 1.48205 2.38563 2.59633 2.94745 3.04512 3.11856 3.52635 3.73391 4.04833 4.06109 4.13766 4.16999 4.25184 4.32328 4.54248 4.58911 4.59913 4.79019 4.83298 4.86873 4.90358 5.03946 5.11933 5.13631 5.18359 5.27261 5.36709 5.57180 5.64809 5.66494 5.84663 5.87496 6.11401 6.31873 6.64245 6.78445 7.36685 8.93410 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.016849 B = 0.009947 C = 0.007142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.466175 B = 2814.379614 C = 3919.478831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.007 3.993 3 Si 0.947 3.053 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.250 1.250 7 C -0.487 4.487 8 H 0.021 0.979 9 C 0.036 3.964 10 C -0.051 4.051 11 C -0.135 4.135 12 C -0.119 4.119 13 C -0.126 4.126 14 C -0.154 4.154 15 C 0.061 3.939 16 N -0.487 5.487 17 C 0.074 3.926 18 C -0.185 4.185 19 H 0.115 0.885 20 C -0.116 4.116 21 C -0.164 4.164 22 H 0.122 0.878 23 C 0.063 3.937 24 H 0.264 0.736 25 H 0.018 0.982 26 H 0.028 0.972 27 H 0.121 0.879 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.133 0.867 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.127 0.873 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.092 -9.373 -7.485 17.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.189 4.189 3 Si 0.771 3.229 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.173 1.173 7 C -0.525 4.525 8 H 0.039 0.961 9 C -0.002 4.002 10 C -0.052 4.052 11 C -0.154 4.154 12 C -0.137 4.137 13 C -0.144 4.144 14 C -0.174 4.174 15 C -0.033 4.033 16 N -0.208 5.208 17 C -0.052 4.052 18 C -0.204 4.204 19 H 0.133 0.867 20 C -0.153 4.153 21 C -0.183 4.183 22 H 0.140 0.860 23 C -0.062 4.062 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.046 0.954 27 H 0.139 0.861 28 H 0.167 0.833 29 H 0.170 0.830 30 H 0.151 0.849 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.145 0.855 34 H 0.121 0.879 35 H 0.095 0.905 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.750 -8.708 -7.332 17.092 hybrid contribution -0.304 0.379 0.097 0.496 sum 12.446 -8.328 -7.236 16.631 Atomic orbital electron populations 1.70058 1.08076 1.27752 1.53625 1.25845 0.95500 1.02904 0.94623 0.85709 0.79461 0.78825 0.78910 1.19654 1.20918 1.17333 1.20927 0.90467 0.92332 1.48770 0.96095 1.18411 0.94397 0.90970 0.96398 1.20164 0.95094 0.97266 0.92676 1.21218 1.00585 0.96483 0.97119 1.21418 0.99194 0.93624 0.99472 1.21254 1.00809 1.00786 0.91553 1.21712 1.01307 0.94667 0.99666 1.18928 1.00620 0.92605 0.91114 1.63042 1.08713 1.47400 1.01626 1.22502 0.95855 0.95240 0.91634 1.24007 0.93864 1.07269 0.95212 0.86727 1.23808 0.97879 0.95504 0.98130 1.23469 0.97724 1.00186 0.96941 0.85995 1.22749 0.91968 1.01464 0.90049 0.92741 0.96344 0.95383 0.86115 0.83312 0.83031 0.84945 0.92536 0.93109 0.85526 0.87949 0.90534 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.86 13.96 21.45 0.30 -61.56 16 2 C 0.01 0.43 5.47 84.66 0.46 0.89 16 3 Si 0.95 46.68 27.47 68.60 1.88 48.56 16 4 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.25 -11.50 6.54 99.48 0.65 -10.85 16 7 C -0.49 -29.47 9.65 25.60 0.25 -29.22 16 8 H 0.02 1.42 7.98 -2.91 -0.02 1.39 16 9 C 0.04 1.81 3.87 29.10 0.11 1.92 16 10 C -0.05 -2.26 5.09 -19.73 -0.10 -2.36 16 11 C -0.14 -5.14 9.67 22.25 0.22 -4.93 16 12 C -0.12 -3.55 10.04 22.29 0.22 -3.33 16 13 C -0.13 -3.45 10.04 22.25 0.22 -3.23 16 14 C -0.15 -4.82 8.05 22.40 0.18 -4.64 16 15 C 0.06 2.42 4.88 38.21 0.19 2.60 16 16 N -0.49 -18.93 4.43 -681.34 -3.02 -21.95 16 17 C 0.07 2.63 6.17 86.45 0.53 3.17 16 18 C -0.18 -5.30 7.29 -8.49 -0.06 -5.36 16 19 H 0.11 3.32 8.14 -2.38 -0.02 3.31 16 20 C -0.12 -2.30 10.30 32.00 0.33 -1.97 16 21 C -0.16 -4.23 6.98 -9.90 -0.07 -4.30 16 22 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 23 C 0.06 1.91 6.16 86.45 0.53 2.45 16 24 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 25 H 0.02 0.92 7.11 -2.39 -0.02 0.90 16 26 H 0.03 1.45 7.05 -2.39 -0.02 1.43 16 27 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 28 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 29 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 30 H 0.13 3.47 6.74 -2.91 -0.02 3.45 16 31 H 0.06 1.79 6.48 -2.39 -0.02 1.78 16 32 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.06 1.58 6.78 -2.38 -0.02 1.57 16 Total: -1.00 -71.75 293.75 3.18 -68.57 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 1.00 Total: 14.68 kcal Atomic # 6 Polarization: -51.32 SS G_CDS: 3.02 Total: -48.30 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -2.72 Total: -83.51 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 1.88 Total: 48.56 kcal Total: -71.75 3.18 -68.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260152584.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.764 kcal (2) G-P(sol) polarization free energy of solvation -71.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds